BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489200
Length=2467
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23390.1 | Symbols: | Plant protein of unknown function (DU... 3927 0.0
> AT5G23390.1 | Symbols: | Plant protein of unknown function (DUF639)
| chr5:7870513-7874505 REVERSE LENGTH=2621
Length=2621
Score = 3927 bits (2126), Expect = 0.0
Identities = 2355/2465 (96%), Gaps = 18/2465 (1%)
Strand=Plus/Plus
Query 18 CGGGAAAGAGAA-GAATCTGAATCGGAGAAGCAATCTAGGTTTACGATTACC-AATTCTG 75
||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 134 CGGGAAAGA-AAGGAATCTGAATCGGAGAAGCAATCGAGGTTTACGATTACCAAATTCTG 192
Query 76 -TCTGATCTGATTAATTGTGGTGATTTCCGATGGAAGAAGAC---GGTGGCGGCGGTGCG 131
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 193 ATCTAATCTGATTAATTGTGGTGATTTCCGATGGAAGAAGACGGTGGTGGCGGCGGTGCG 252
Query 132 AAAGTCGGAGTGCTGGAGAATTTCATGAGGACGCAGCAGAGTTCTTTGAAATCCTTGTTC 191
||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| || |||
Sbjct 253 AAAGTTGGAATGCTGGAGAATTTCATGAAGACGCATCAGAGTTCTTTGAAATCGTTATTC 312
Query 192 CAGAGGAAGAAATCGTCCTCTGGTCGTGATGGAGATGCTTCTCCGTCGCCTATCGCTTCC 251
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CAGAGAAAGAAATCATCCTCTGGTCGTGATGGAGATGCTTCTCCGTCGCCTATCGCTTCC 372
Query 252 CCGAAACCTATTCCTCAGCTCTCTCTTCTCGCCAATTCCGTCGTCTCACGCTGTTCAAAG 311
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 373 CCGAAACCTATTCCGCAGCTCTCTCTTCTCGCCAATTCCGTCGTCTCCCGCTGTTCAAAG 432
Query 312 ATCCTTAACATTCCAACAGAAGATCTGCAACATCATTTTGATGTAGAGTTGCCTGAGAGT 371
||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 433 ATCCTGAACATTCAAACAGAAGATCTGCAGCATCATTTTGATGTAGAGTTGCCTGAGAGT 492
Query 372 GTTAAGCAACTCTTGACATATGCAAGGAACTTTTTAGAGTTCTGCTCTTTTCAGGCACTT 431
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GTTAAGCAACTATTGACATATGCAAGGAACTTTTTAGAGTTCTGCTCTTTTCAGGCACTT 552
Query 432 CACCAAGTGATGAAAAAACCTGATTACTTAAGTGATCAAGAGTTCCGTCAGCTATTGTTT 491
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 553 CATCAAGTGATGAAAAAACCTGATTACTTGAGTGATCAAGAGTTCCGTCAGCTAATGTTT 612
Query 492 GACATGATGCTTGCTTGGGAGACTCCCAGTGTCACAAGTGAGCAGGAAAACAAAGATGCA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GACATGATGCTTGCTTGGGAGACTCCCAGTGTCACAAGTGAGCAGGAAAACAAAGATGCA 672
Query 552 GCATCTCCCTCCAAGCAGGACTCAGAGGATGAGGATGGGTGGTCGCTATTCTATTCAAGT 611
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 673 GCATCTCCCTCCAAGCAGGACTCAGAGGATGAGGATGGATGGTCGCTATTCTATTCAAGT 732
Query 612 CCCACAAATATGGCAATGCAGGTTGATGaaaaaaaGTCTGTAGGACAGGAGGCTTTTGCA 671
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 733 CCCACTAATATGGCAATGCAGGTTGATGAAAAAAAGTCTGTCGGACAGGAGGCTTTTGCA 792
Query 672 AGAATTGCTCCGGTTTGTCCTGCCATTGCAGATGCAATAACTGTACATAATCTTTTTGAT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGAATTGCTCCGGTTTGTCCTGCCATTGCAGATGCAATAACTGTACATAATCTTTTTGAT 852
Query 732 GCACTGACTAGCTCGTCAGGCCACAGGCTTCATTTTATCGTATATGACAAATACATCCGC 791
||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 853 GCACTAACTAGCTCGTCAGGCCACAGGCTTCATTATATCGTATATGACAAATACCTCCGC 912
Query 792 ACACTTGACAAAATTTTCAAGGCTGCAAAAAGCACTCTAGGACCTTCAGCTGCCAATCTT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 ACACTTGACAAAATTTTCAAGGCTGCAAAAAGCACTCTAGGACCTTCAGCTGCCAATCTT 972
Query 852 CAGCTTGCCAAGGGAGAAATAGTGCTTGATATGGATGGTGCAAACCCTGTTTTACCGGTT 911
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 973 CAGCTTGCCAAGGGAGAAATAGTGCTTGATATGGATGGTGCAAATCCTGTTTTACCGGTT 1032
Query 912 CTTAAACACGTGGGCATCTCAGCATGGCCTGGTAAACTGACACTTACCAACTATGCTCTA 971
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1033 CTTAAACACGTGGGCATCTCAGCATGGCCTGGTAAACTGACACTTACCAACTGTGCTCTA 1092
Query 972 TATTTTGATTCAATGGGTGGTGGTGAAAAGGCCATGCGATATGATCTCACTGAAGACACA 1031
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1093 TATTTTGATTCAATGGGTGGTGGTGAAAAGCCCATGCGATATGATCTCACTGAAGACACA 1152
Query 1032 AAACAGGTCATCAAACCTGAGTTAACAGGGCCATTGGGTGCTCGTATATTTGATAAAGCC 1091
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1153 AAACAGGTCATCAAACCTGAGTTGACAGGGCCATTGGGTGCTCGTATATTTGATAAAGCC 1212
Query 1092 ATCATGTATAAATCAATTATAGTACCAGAGCCAGTATATTTTGAATTCACAGAGTTTAAA 1151
|| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1213 ATTATGTATAAATCAATTACAGTACCAGAGCCAGTATTTTTTGAATTTACAGAGTTTAAA 1272
Query 1152 GGCAATGCTCGTCGAGACTACTGGTTGGGAATATGTTTGGAGATCCTTCGCGTACAATGG 1211
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 1273 GGCAATGCTCGTCGAGACTACTGGTTGGGAATTTGCCTGGAGATCCTTCGTGTACAATGG 1332
Query 1212 TTCATACGAAGATACAACTTTAAAGGGGTTCAACGATCAGAAATACTTGCAAGAGCAATC 1271
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1333 TTCATACGAAGATACAACTTTAAAGGGATTCAACGATCAGAAATACTTGCAAGAGCAATC 1392
Query 1272 CTTGGCATATTCCGGTATCGTGCAATAAGGGAAGCTTTCCAAGTCTTCTCTTCCCAATAT 1331
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1393 CTTGGGATATTCCGGTACCGTGCAATAAGGGAAGCTTTTCAAGTCTTCTCTTCCCAATAC 1452
Query 1332 AAAACATTGCTTATATTTAACCTGGCAGAAAGTCTCCCCGGTGGAGATATGGTCTTAGAA 1391
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1453 AAAACATTGCTTATATTTAACCTGGCAGAAAGTCTCCCCGGCGGAGATATGGTCTTAGAA 1512
Query 1392 GCTCTATCCAGTCGTGTCTCTCGTATAACCACTGATGTCCCTTCTGATGTCGGTTCTGTT 1451
||||| ||||| ||||||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 1513 GCTCTGTCCAGCCGTGTCTCTCGCATAACCACTAATGTTGCTTCTGATATCGGTTCTGTT 1572
Query 1452 CAGTATATGAAATGGCCCTCAAAATTATCTCCAGTATCACTCAAATTGCTTGAGCATTTT 1511
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1573 CAGTATATGAAATGGCCCTCAAACTTATCTCCAGTCTCACTCAAATTGCTTGAGCATTTT 1632
Query 1512 GGCTTGAATCTAGAAACTGGGACAAATATGGGTGAAGAAATGACAATCGTAGGAGATTTT 1571
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1633 GGCTTGAATCTAGAAACAGGGACAAATATGGGTGAAGAATTGACAATCGTAGGAGATTTT 1692
Query 1572 TGTGTTGGAGAGACGAGTCCATTGGAGATAGCTCTGAAACAGTCAATCCTAGACACAGAT 1631
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TGTGTTGGGGAGACGAGTCCATTGGAGATAGCTCTGAAACAGTCAATCCTAGACACAGAC 1752
Query 1632 AGAGCTGAAGCTGCTCAGGCGACTGTGGAACAAGTGAAAGTAGAAGGAATTGACACTAAC 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 AGAGCTGAAGCTGCTCAGGCGACTGTGGAACAAGTGAAAGTAGAAGGAATTGACACTAAC 1812
Query 1692 GTTGCAGTTATGAAGGAGCTATTGTTACCTTTCATCAAACTAGGCTTGCATATAAATCTC 1751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1813 GTTGCAGTTATGAAGGAGCTATTGTTACCTTTCATCAAACTAGGCTTGCATATAAATCGC 1872
Query 1752 TTAGCCTATTGGCAAGATCCTTATAAATCAACGGTGTTCATGATCTTGGTCAGCTATTTG 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1873 TTAGCCTATTGGCAAGATCCTTATAAATCAACGGTGTTCATGATCTTGGTCAGCTATATG 1932
Query 1812 ATTATCAGTGAGTGGATCGGTTTCATACTACCGTCCATATTAGTCCTAGTGGCTATAGTA 1871
|||||||||| |||||||||||||||| ||||||| |||||| ||||||| |||||||||
Sbjct 1933 ATTATCAGTGGGTGGATCGGTTTCATATTACCGTCAATATTACTCCTAGTAGCTATAGTA 1992
Query 1872 ATGCTGTGGCGAAAGCAATTCAACAAAGGGAAAGAACCAAAAGCTGTTCGAGTGAAAGCT 1931
||| ||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 1993 ATGATGTGGCGTAAGCAATTCAACAAAGGGAAAGAACCAAAAACCGTTCGTGTGAAAGCT 2052
Query 1932 CCACCAAGTAAAAACGCAGTGGAGCAGCTACTCGTACTACAAGATGCAATTAGCCAGTTC 1991
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2053 CCACCAAGTAAAAACGCGGTGGAGCAGCTTCTCGTACTACAAGATGCAATTAGCCAGTTC 2112
Query 1992 GAGTCGCTAATCCAAGCTGTTAACGTTGGTCTCCTCAAAATAAGAGCCATTACTCTTGCA 2051
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2113 GAGTCGCTAATCCAAGCTGTTAACGTTGGTCTCCTCAAAATAAGAGCAATTACCCTTGCA 2172
Query 2052 ATTCTTCCTCAGGCTACAGATACAACGGCTATATCGCTTGTGGTTGTGGCGGTTATATTG 2111
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2173 ATTCTTCCTCAGGCGACAGATACAACGGCTATATCGCTTGTGGTTGTGGCAGTTATATTG 2232
Query 2112 GTGGTTGTTCCGGTGAAGTACTTAATTACGATTGCGTTTGTAGAGTGGTTCACGAGGGAA 2171
| ||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 2233 GCGGTTGTTCCTGTTAAGTACTTAATAACGGTTGCGTTTGTAGAGTGGTTCACGAGGGAA 2292
Query 2172 ACTGGGTGGAGGAAAGCGAGTAGTGACCGGCTAGAGAGGCGGATAAGAGAATGGTGGTTT 2231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2293 GTTGGGTGGAGGAAAGCGAGTAGTGACCGGCTAGAGAGGCGGATAAGAGAATGGTGGTTT 2352
Query 2232 AGGGTACCCGCAGCTCCTGTTCAGCTCATTAGAGCCGAAGATAGCAAGAAGAAGAAGAAA 2291
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2353 AGGGTACCAGCAGCTCCTGTTCAGCTCATTAGAGCCGAAGATAGCAAGAAGAAGAAGAAA 2412
Query 2292 TGACACTTTTCATTTCTGTCTCACACGCACTGTCTCTCTTTCTAGACATATTCTTTTCAT 2351
|||||||||||| |||| |||||||||| |||||||||||||||||||||| |||| ||
Sbjct 2413 TGACACTTTTCAATTCT--CTCACACGCATTGTCTCTCTTTCTAGACATATTGTTTTGAT 2470
Query 2352 ATTAGA-tttttt-ttgttctt-ttttt----cca-tttt-AAGTAAGATTCGGGTTTAT 2402
|||||| |||||| || ||||| ||||| || |||| |||||||||||||||||||
Sbjct 2471 ATTAGAATTTTTTATTCTTCTTCTTTTTTTTTCCCCTTTTTAAGTAAGATTCGGGTTTAT 2530
Query 2403 TCATAAATATGAGACGAACAAACTCGTTTCTTGACTTTTAACTAGCCAGTTTGACAAATA 2462
||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
Sbjct 2531 TCATAAATATGAGACGAACTAACTCGTTTTTTGACTTTTAACTACCCAGTTTGACAAAAA 2590
Query 2463 CAAGT 2467
|||||
Sbjct 2591 CAAGT 2595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122407340920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5