BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489201
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23395.1 | Symbols: MIA40 | Cox19-like CHCH family protein |... 809 0.0
> AT5G23395.1 | Symbols: MIA40 | Cox19-like CHCH family protein
| chr5:7874672-7876427 REVERSE LENGTH=1001
Length=1001
Score = 809 bits (438), Expect = 0.0
Identities = 742/876 (85%), Gaps = 71/876 (8%)
Strand=Plus/Plus
Query 1 AGAGACTAGAATATGAAAAAATTCAAATTCAAGCCCAATAAACACTAAACAAAATTGAAA 60
||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 125 AGAGACTAGAATATGGAAAAATTCAAATTCAAGCCCAATAAACCCTGAACAAAATTTAAA 184
Query 61 GCCCGGCCCGTT-T-TGACTTATCTGGGCCTT-TTTTGGGAAATTC-AGATT-GG-AA-- 112
||| ||||| || | |||| ||||||||||| |||| | | ||| | || || ||
Sbjct 185 GCCTGGCCC-TTGTCTGAC-CATCTGGGCCTTCTTTT--G-ATTTCAATTTTGGGAAATT 239
Query 113 CCG-TAACGTCGACGCATTTCTTTTGA--G--GGATCTGCTTTCTCGTCGGCGGCTAACC 167
| | | |||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 240 CAGATTGCGTCGACGCATTTCTTTTGAGGGATGGATCTGCTTTCTCGTCGGCGGCTAATC 299
Query 168 AAATTCTTCGAGA-GGTTTTGCCA-CATTTTCTCGACATGGGTCAAGCTCAGAGTGACGA 225
||||||||| ||| ||||||| | | |||||||| || || | || | |
Sbjct 300 AAATTCTTCCAGAGGGTTTTGAAAGAAATTTCTCGAGAT-GG----G-TC------A--A 345
Query 226 GAACTCAATTCCAacgacgacgacgacgacgacgacgacgacgacgacgacgacgaACAC 285
| ||| | || | ||||| || || | | ||||||||||||| |||||||
Sbjct 346 G--CTC-A----AA-G-TGACGA-GA--AC-TCAATTCCGACGACGACGACAACGAACA- 391
Query 286 TCCTCCTCCTCCTTCTGCGAATTCGCCGCGGGATTCTGAAGATACTTCGTCGCCATCGAT 345
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 392 --CTCCTCCTCCTTCTGCGAATTCACCTCGGGATTCTGAAGATACTTCGTCGCCATCGAT 449
Query 346 GGATTCTCTCCTCGCAGAAGCTGCAGCATATGGTGAGGATGATAATGAGAATGAGTCGCT 405
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 450 GGATTCTCTTCTTGCAGAAGCTGCAGCATATGGTGAAGATGATAATGAGAATGAGTCTCT 509
Query 406 TGAAGC-AAAGGCACAGAGAGCTCTCGATTGTCCTTGCATAGCAGATTTGCGTAATGGAT 464
|||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 510 TGAAGCCAAAG-CACAGAGAGCTCTCGATTGTCCTTGTATAGCAGATTTGCGTAATGGCT 568
Query 465 CTTGCGGCTCTCAGTTCTCCGAGGCCTTCCTTTGCTTTCTCAAGAGTACTGCTGAAGAAA 524
||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 569 CTTGCGGGTCTCAGTTCTCCGAGGCATTCCTTTGCTTTCTCAAAAGCACTGCTGAAGAAA 628
Query 525 AGGGATCAGACTGTGTGCATCCATTTGTAGCGTTGCAAAGCTGTATCAAAGCAAATCCGG 584
||||||||||||| ||| ||||||||||||| ||||||||||||||||| || |||||||
Sbjct 629 AGGGATCAGACTGCGTGAATCCATTTGTAGCATTGCAAAGCTGTATCAATGCCAATCCGG 688
Query 585 ATGCATTCTCTAAATCAGTTACAGAGGATGAAGA-GAAAACCGAGAAAAAGGAAGAAG-A 642
|||||||||||||||||||||||| ||| ||| | |||| |||||||||||||||| | |
Sbjct 689 ATGCATTCTCTAAATCAGTTACAGGGGACGAAAAAGAAA-CCGAGAAAAAGGAAGA-GCA 746
Query 643 GCCGCCGGTGCAAGACCATAGAATCATCCCGCCTCTCTGGGCCAAAGACCCGCCTGGCAG 702
||| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 747 GCCTCCTGTGCAAGACCATAGAATCATCCCTCCTCTCTGGGCCAAAGACCCGCCTCGCAG 806
Query 703 TAACAATTCCAAGCTTTAGAAGATCAACAACAATGGAGTCAG--TC------T---CTC- 750
| |||||||||||||||||| |||||||||||||||||||| || | |||
Sbjct 807 TGGCAATTCCAAGCTTTAGAATATCAACAACAATGGAGTCAGCATCAGAAGCTAGTCTCT 866
Query 751 C-TCTTTTGATTCTTCTCTCTAGGCAACAAAAACAAAAGAAAGTAAAAGAAGAGTAGAAG 809
| ||||||||||||| ||||||| || || || ||| ||||||||||||||||||
Sbjct 867 CCTCTTTTGATTCTTTTCTCTAGACAGCACTTTTAA--GAATGTAAAAGAAGAGTAGAAG 924
Query 810 ACCATAATCAGTGGTCGTGTAGATCAACATTGTTCT 845
||||| ||||||||||||||||||||||||||||||
Sbjct 925 ACCATGATCAGTGGTCGTGTAGATCAACATTGTTCT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41192000540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5