BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489205 Length=667 Score E Sequences producing significant alignments: (Bits) Value AT5G23440.1 | Symbols: FTRA1 | ferredoxin/thioredoxin reductase... 784 0.0 > AT5G23440.1 | Symbols: FTRA1 | ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 | chr5:7903045-7903845 REVERSE LENGTH=801 Length=801 Score = 784 bits (424), Expect = 0.0 Identities = 510/551 (93%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 1 ATGAGTAGCCCCGTCGCTTTGTCACCGGCCATCGCCGCCGCCGTTCGACC-TCCATCATC 59 |||||||||| ||||||||||||||||||||||||||||| |||| || ||| || || Sbjct 68 ATGAGTAGCCAAATCGCTTTGTCACCGGCCATCGCCGCCGCCATTCG-CCGTCCGTCCTC 126 Query 60 TCACGACTGTCTCTCCGCCTCCGCCACAACTGCTA---CCACCGCCATGGCGCTCAAATC 116 |||||||||||| ||||| |||||||| ||||||| ||||| ||||||| |||||||| Sbjct 127 TCACGACTGTCTATCCGCTTCCGCCACTACTGCTACCGCCACCCCCATGGCTCTCAAATC 186 Query 117 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCGAATCAAACACTCAAGCTC 176 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 187 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCAAATCAAACACTCAAGCTC 246 Query 177 AAGAAAAACTTCTCGAATAATCACGATTCGATGCGATGTAGCGATTAAATCCGCTGATTC 236 ||||||||||||||| || |||||||||||||||||||||||| |||||||| ||||| Sbjct 247 AAGAAAAACTTCTCG---AACCACGATTCGATGCGATGTAGCGATAAAATCCGCAGATTC 303 Query 237 GGTAAACGCAGACGCCAATCCATCATCTTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 296 | ||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 304 GATAAACGCAGACGCCAATCCTTCGTCCTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 363 Query 297 AGCGAAGGCGAAGATAGGATCTAGGGTTAAAGTAACAGCTCCGTTGAAGGTTTATCATGT 356 ||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| Sbjct 364 AGCGAAGGCGAAGATAGGATCTAGGGTTAGAGTAACTGCACCGTTGAAGGTTTATCATGT 423 Query 357 AAATCGAGTAGCGGAGGTTGATTTGGAAGGTATGGAAGGTAAACTCAAAGATTACGTCGC 416 ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 424 AAATCGAGTTCCAGAGGTTGATTTAGAAGGTATGGAAGGTAAACTCAAAGATTACGTTGC 483 Query 417 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGGTTGAGTTCTTCAAAGA 476 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 484 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGATTGAGTTCTTCAAAGA 543 Query 477 AATTGAAGGTCGTGGTCCTGTTAAATTCGTTGCTCATCTTAAGGAAGATGAGTTTGAGTT 536 ||||||||||||||||| ||||||||| ||| | |||||||||||||||||||| ||||| Sbjct 544 AATTGAAGGTCGTGGTCTTGTTAAATTTGTTTCACATCTTAAGGAAGATGAGTTCGAGTT 603 Query 537 CATTGATCAGT 547 ||||||||||| Sbjct 604 CATTGATCAGT 614 Score = 167 bits (90), Expect = 1e-40 Identities = 113/123 (92%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 549 GTTTGTTGTGGTTACTGGAATCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 608 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 665 GTTTGTTGTGTTTACTGGAACCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 724 Query 609 T--A-CCTTTAGCAAATCATATACATAAGGGCTTCTTCACT-TCCTATTGATGTTGATTT 664 | | |||||||||| ||||||||||||||| ||||||||| || |||| |||||||||| Sbjct 725 TTCAACCTTTAGCAA-TCATATACATAAGGGTTTCTTCACTCTC-TATTTATGTTGATTT 782 Query 665 GAT 667 ||| Sbjct 783 GAT 785 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32250322374 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5