BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489205
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23440.1 | Symbols: FTRA1 | ferredoxin/thioredoxin reductase... 784 0.0
> AT5G23440.1 | Symbols: FTRA1 | ferredoxin/thioredoxin reductase
subunit A (variable subunit) 1 | chr5:7903045-7903845 REVERSE
LENGTH=801
Length=801
Score = 784 bits (424), Expect = 0.0
Identities = 510/551 (93%), Gaps = 8/551 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAGCCCCGTCGCTTTGTCACCGGCCATCGCCGCCGCCGTTCGACC-TCCATCATC 59
|||||||||| ||||||||||||||||||||||||||||| |||| || ||| || ||
Sbjct 68 ATGAGTAGCCAAATCGCTTTGTCACCGGCCATCGCCGCCGCCATTCG-CCGTCCGTCCTC 126
Query 60 TCACGACTGTCTCTCCGCCTCCGCCACAACTGCTA---CCACCGCCATGGCGCTCAAATC 116
|||||||||||| ||||| |||||||| ||||||| ||||| ||||||| ||||||||
Sbjct 127 TCACGACTGTCTATCCGCTTCCGCCACTACTGCTACCGCCACCCCCATGGCTCTCAAATC 186
Query 117 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCGAATCAAACACTCAAGCTC 176
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 187 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCAAATCAAACACTCAAGCTC 246
Query 177 AAGAAAAACTTCTCGAATAATCACGATTCGATGCGATGTAGCGATTAAATCCGCTGATTC 236
||||||||||||||| || |||||||||||||||||||||||| |||||||| |||||
Sbjct 247 AAGAAAAACTTCTCG---AACCACGATTCGATGCGATGTAGCGATAAAATCCGCAGATTC 303
Query 237 GGTAAACGCAGACGCCAATCCATCATCTTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 296
| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 304 GATAAACGCAGACGCCAATCCTTCGTCCTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 363
Query 297 AGCGAAGGCGAAGATAGGATCTAGGGTTAAAGTAACAGCTCCGTTGAAGGTTTATCATGT 356
||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 364 AGCGAAGGCGAAGATAGGATCTAGGGTTAGAGTAACTGCACCGTTGAAGGTTTATCATGT 423
Query 357 AAATCGAGTAGCGGAGGTTGATTTGGAAGGTATGGAAGGTAAACTCAAAGATTACGTCGC 416
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 424 AAATCGAGTTCCAGAGGTTGATTTAGAAGGTATGGAAGGTAAACTCAAAGATTACGTTGC 483
Query 417 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGGTTGAGTTCTTCAAAGA 476
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 484 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGATTGAGTTCTTCAAAGA 543
Query 477 AATTGAAGGTCGTGGTCCTGTTAAATTCGTTGCTCATCTTAAGGAAGATGAGTTTGAGTT 536
||||||||||||||||| ||||||||| ||| | |||||||||||||||||||| |||||
Sbjct 544 AATTGAAGGTCGTGGTCTTGTTAAATTTGTTTCACATCTTAAGGAAGATGAGTTCGAGTT 603
Query 537 CATTGATCAGT 547
|||||||||||
Sbjct 604 CATTGATCAGT 614
Score = 167 bits (90), Expect = 1e-40
Identities = 113/123 (92%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 549 GTTTGTTGTGGTTACTGGAATCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 608
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 665 GTTTGTTGTGTTTACTGGAACCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 724
Query 609 T--A-CCTTTAGCAAATCATATACATAAGGGCTTCTTCACT-TCCTATTGATGTTGATTT 664
| | |||||||||| ||||||||||||||| ||||||||| || |||| ||||||||||
Sbjct 725 TTCAACCTTTAGCAA-TCATATACATAAGGGTTTCTTCACTCTC-TATTTATGTTGATTT 782
Query 665 GAT 667
|||
Sbjct 783 GAT 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5