BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489208
Length=2995
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23450.3 | Symbols: ATLCBK1, LCBK1 | long-chain base (LCB) k... 2518 0.0
> AT5G23450.3 | Symbols: ATLCBK1, LCBK1 | long-chain base (LCB)
kinase 1 | chr5:7904708-7909585 REVERSE LENGTH=3126
Length=3126
Score = 2518 bits (1363), Expect = 0.0
Identities = 1547/1633 (95%), Gaps = 24/1633 (1%)
Strand=Plus/Plus
Query 1374 GTTCTTAATGGTCTACTTACTCGAAGCAATCAGAAAGAAGGAGTTTCTATCCCAATTGGA 1433
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1462 GTTCTTAATGGTCTGCTTACTCGAAGCAATCCGAAAGAAGGAGTTTCTATCCCAATTGGA 1521
Query 1434 ATAGTACCTGCTGGTTCTGATAACTCGTTAGTTTGGACTGTCCTTGGTGTACGAGATCCT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1522 ATAGTACCTGCTGGTTCTGATAACTCGTTAGTTTGGACTGTCCTTGGTGTAAGAGATCCT 1581
Query 1494 ATTTCTGCAGCACTATCTATTGTGAAGGGTGGCCTAACAGCTACTGATGTCTTTGCTGTT 1553
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 ATTTCTGCAGCACTCTCTATTGTGAAGGGTGGCCTAACAGCTACTGATGTCTTTGCTGTT 1641
Query 1554 GAATGGATTCATACCGGTGTTATACACTTTGGAATGACTGTATCCTACTATGGTTTTGTT 1613
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1642 GAATGGATTCATACCGGTATTATACACTTTGGAATGACTGTTTCCTACTATGGTTTTGTT 1701
Query 1614 AGCGATGTTTTGGAGCTCTCTGAAAAATACCAAAAACGGTTTGGTCCTTTGCGTTACTTT 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 AGCGATGTTTTGGAGCTCTCTGAAAAATACCAAAAACGGTTTGGTCCTTTGCGTTACTTT 1761
Query 1674 GTTGCTGGATTCCTCAAGTTCATGTGTTTGCCAAAGTATAGCTATGAAGTGGAATATCTT 1733
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1762 GTTGCTGGATTCCTCAAGTTCATGTGTTTGCCGAAGTATAGCTATGAAGTGGAATATCTT 1821
Query 1734 CCGGCACAAAAAGAGGATGCGGAAGGCAAAATTCGACTTGAAAAGGAAGC-GATGGATAT 1792
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1822 CCGGCACAAAAAGAGGATGCAGAAGGCAAAATTCGACTTGAAAAGGAAGCTG-TGGATAT 1880
Query 1793 GCAAGATCTCTACACGGATGTAATGAGGAGATCAAGCAGAGAAGGATTTCCTAGAGCCTC 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GCAAGATCTCTACACGGATGTAATGAGGAGATCAAGCAGAGAAGGATTTCCTAGAGCCTC 1940
Query 1853 TAGTTTATCAAGTATTGACTCCATAATGACCCCAAGCGTAGGCGAAGTAGACACGTGTAG 1912
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1941 CAGTTTATCAAGTATTGACTCCATAATGACCCCAAGCGTAGGCGAATTAGACACTTGTAG 2000
Query 1913 CAGCACACATGCCAGCACTGAGCCGTCTGAATATGTCCGTGGAATAGATCCTAAAATGAA 1972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 CAGCACACATGCCAGCACTGAGCCGTCTGAATATGTCCGTGGAATAGATCCTAAAATGAA 2060
Query 1973 ACGCATGTCCTCTGGAAGAAGAGATGTTACGGCTGAGCCAGAGGTTATTCATCCTCAAGC 2032
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 ACGCTTGTCCTCTGGAAGAAGAGATGTTACGGCTGAGCCAGAGGTTATTCATCCTCAAGC 2120
Query 2033 ACAGTCAACAACCCCTAATTGGCCAAGGACAAGGTCAAAGTCAAGAATGGATAAAGGATG 2092
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2121 ACAGTCAACAACCCCTAATTGGCCAAGGACAAGATCAAAGTCAAGAATGGATAAAGGATG 2180
Query 2093 GATGGGGTTAACATCTGTGCAGGATCCTCCAACTCGATGTTCATGGGGAAATACCGGTGG 2152
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2181 GATGGGGTTAACATCCGTGCAGGATCCTCCAACTCGATGTTCATGGGGGAATACCGGTGG 2240
Query 2153 TCATGACAGGGAAGATATATCATCTACTGTATCTGATCCAGGTCCGATCTGGGATGCAGG 2212
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2241 TCAAGACAGGGAAGATATATCATCTACTGTATCTGATCCAGGTCCAATCTGGGATGCAGG 2300
Query 2213 ACCCAAATGGGACACTGAACCGTCTGCTTGGGATGTAGAAAACTCGATCGAGCTGCCTGG 2272
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2301 ACCCAAATGGGACACTGAACCGTCTGCTTGGGATGTAGAAAATTCGATCGAGCTGCCTGG 2360
Query 2273 TCCTCCTGAGGATATAGAGACTGGACTGAGGAAGCAGAGCATCACACCAATATTTGAGGA 2332
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 2361 TCCTCCTGAGGATATAGAGACAGGACTGAGGAAACAGAGCATCACTCCAATATTTGAGGA 2420
Query 2333 TAAATGGGTTTCGAGAAAGGGGCATTTCCTCGGCATCATGGTCTGTAACCATGCTTGTCG 2392
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2421 TAAATGGGTTTCGAGAAAGGGACATTTCCTCGGCATCATGGTCTGTAACCATGCTTGTCG 2480
Query 2393 GACTGTGCAGAGTTCTCAAGTTGTGGCTCCCAATTCAGAACATGACGATGGTACAATGGA 2452
||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2481 GACTGTGCAAAGTTCCCAAGTCGTGGCTCCCAATTCAGAACATGATGATGGTACAATGGA 2540
Query 2453 CATGCTCTTGGTTCACGGGTGTGGAAGACTGAGGTTGCTGAGGTTTTTCATACTTCTGCA 2512
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 2541 TATGCTCTTGGTTCATGGGTGTGGAAGACTGAGGTTACTGAGGTTTTTTATACTTTTGCA 2600
Query 2513 AACAGGTCGACACCTTTCTCTTCCGTATGTCGAGTGTGTAAAGGTGAAATCGGTGAAGAT 2572
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2601 AACAGGTCGACACCTTTCTCTTCCGTATGTTGAGTGTGTAAAGGTGAAATCAGTGAAGAT 2660
Query 2573 AAAAGCGGGAAAAAATACGCATGACAGTTGTGGTATAGACGGAGAGCTGTTTGCGTTGCA 2632
||| ||||| |||||||||||||||||||| || |||||||| || |||||||| |||||
Sbjct 2661 AAAGGCGGGGAAAAATACGCATGACAGTTGCGGGATAGACGGGGAACTGTTTGCATTGCA 2720
Query 2633 TGGAGAAGTGATATCGACAATGCTACCTGAACAATGCAGACTGATCGGTAATGCTCCTGG 2692
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2721 TGGAGAAGTGATATCGACAATGCTACCTGAACAATGCAGACTGATCGGTAACGCTCCTGG 2780
Query 2693 ACGACATTCATAGTTAATTAATCTCATCCAAATTGTGAGGATGGAGAATGAGAGAGAGTT 2752
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 2781 ACGACATTCATAGTTAATTAATCTCATCTAAATTGTGAGGATGG----TGAGAGAG--TT 2834
Query 2753 TGGATGTTTATATATCTTGAATTCtttttttttGTCGGC-GTCAAGTT-TACGG-GT-AA 2808
||||||||||||||||| |||||| ||||| |||| || || | ||| || ||
Sbjct 2835 TGGATGTTTATATATCTGGAATTCATTTTTATTGTTTTTTGTTTT-TTGT-CGGCGTCAA 2892
Query 2809 GTATTAT--TATCT-C-ATCTATGTGATAAGAGAAGTAA-CATGAGAGAGTATACCA-GT 2862
|| ||| || | | ||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2893 GT-TTACGGTAAGTACCATCTATGTGATAAGAGAAGCAAACATGAGAGAGTATACCAAGT 2951
Query 2863 ACATCCTTATGTGCCATAAGTTCCCTAAAACTCTAAAACCCCtttgtatattcttttgcc 2922
|||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2952 ACATCCTTTTGTGCCATAACTTCCCTATAACTCTAAAACCC-TTTGTATATTCTTTTGCC 3010
Query 2923 cttttttgtgtgtgttttgaattatatatgtactgtgtatgtgtttcctacaacgatttg 2982
||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 3011 CTTTTTTGTGTGT-TTT-GAATTATATATGTACTGTGTACGTGTTTTCTACAACGATTTG 3068
Query 2983 tgtgttttCATTT 2995
||||||| |||||
Sbjct 3069 TGTGTTTCCATTT 3081
Score = 1810 bits (980), Expect = 0.0
Identities = 1292/1430 (90%), Gaps = 71/1430 (5%)
Strand=Plus/Plus
Query 1 GAAATAAATCCGAAAGGAGGGGGCCATAGGTTTCTGCTGTCGAGTCGAATCCAATCGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GAAATAAATCCGAAAGGAGGGGGCCATAGGTTTCTGCTGTCGAGTCGAATCCAATCG-AA 59
Query 61 ATCGAATCG-AATTGAGTCGAGTCATCATCTCCTCCGCCATTATCGTCTtctctctctct 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATCGAATCGAAATTGAGTCGAGTCATCATCTCCTCCGCCATTATCGTCTTCTCTCTCTCT 119
Query 120 ctctcCGCCACCTCTCTTCAATTCTGACGCTTCTCAGATCCTCCGATCCGGCGGCGTTAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCTCCGCCACCTCTCTTCAATTCTGACGCTTCTCAGATCCTCCGATCCGGCGGCGTTAC 179
Query 180 TTTTGCT--T----TT-T-T---------------GTTCGCCGAGAAGCTAAGGGAAAAT 216
||||||| | || | | ||||||||||||||||||| | |||
Sbjct 180 TTTTGCTGATACACTTCTCTCCATTTCTTCTTTTTGTTCGCCGAGAAGCTAAGG-AGAAT 238
Query 217 T-TTC-TGAAAAACGCGTTGACGGATCTGATATATAGCTACGGATTAGAAATGGCTTCGC 274
| ||| |||||| |||||||| ||||||||| |||||||||||||||||| | | |
Sbjct 239 TCTTCCTGAAAA-CGCGTTGATGGATCTGATGTATAGCTACGGATTAGAA-T---T--G- 290
Query 275 TGCGTAATTCTCTCTGAAATCTGTTCGTTGACCAGCTCGAACAAGGTT-G---GG-TTT- 328
|| ||||||||||| |||||||||||||||||||||||||| ||||| | || |||
Sbjct 291 TG--TAATTCTCTCTAAAATCTGTTCGTTGACCAGCTCGAACGAGGTTTGATTGGGTTTC 348
Query 329 T-TGTTT-TG-TG-T-ATGCCTCCCGATCACTGTTTG--T-C-G-TC--TGTTT--CGTC 374
| ||||| || | | | | | | | ||| || | | | || ||||| ||||
Sbjct 349 TCTGTTTATGCTCATCAGGGGTTTTGTTTTGTGTATGCCTTCCGATCACTGTTTGTCGTC 408
Query 375 -----CG-C-G-G-AACTCAAGAGCAGAGAGATTATTAGCT-TACGGATATGCAGAAGAG 424
|| | | | |||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 409 TGTTTCGTCCGCGGAACTCAAGAGCAGAGAGATTGTTAG-TGTACGGATATGCAGAAGAG 467
Query 425 TGGCGTAAATCGGAATCCTTCTTT-AAGAGTAGCCATTCCTCAGGCACAACAGTCGCTTA 483
||| || |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 468 TGGTGTTAATCGGAACCCTTCTTTGAA-AGTAGCCATTCCTCAGGCACAACAGTCGCTTA 526
Query 484 GGCGTTTAGGTTTTTGCTCTCAAATAGCTACGGGCGGATCTCAGCAGTCATCTCCTGTGG 543
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |
Sbjct 527 GACGTTTAGGTTTTTGCTCCCAAATAGCTACGGGTGGATCTCAGCAGTCATCTCCTATAG 586
Query 544 TATTCCCTGAAAAGAGAAGCAAGAAGGTGAAGGCATCTTCGAGACGTGGTGAGGTTACTA 603
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TATTCCCTGAAAAGAGAAATAAGAAGGTGAAGGCATCTTCGAGACGTGGTGAGGTTACTA 646
Query 604 ATGATCCACAGGTGAAACCGAAGCCTGATGAGCATCGGATTGATATTGGTGGAGGAGATG 663
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 647 ATGATCCACAGGTGAAACCGAAGCCTGATGAGCATCGGATCGATATTGGTGGAGGGGATG 706
Query 664 AGAAATCAGATTTGTTAGGTAGTCTTGTTTACGCCGGGAAGCTTGTATTGGATAAGAGGA 723
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 707 AGAAATCAGATTTGTTAGGTAGTCTTGTTTACGCTGGGAAGCTTGTGTTGGATAAGAGGA 766
Query 724 AATCTGCGAGTGGGAAAGATGCTACAGAGATACAGCAACCATCTGCCACAGACGTCTCTA 783
||||||||||||| |||||||| |||||||||||||||||| | || || ||| ||||||
Sbjct 767 AATCTGCGAGTGGAAAAGATGCAACAGAGATACAGCAACCAGCCGCTACGGACATCTCTA 826
Query 784 ATAAGAAAGCAGTTGATGCAAAGCTTACAAGCAGCGCTTTGGTTTGGGGTTCTGACATGC 843
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTAAGAAAGCAGTTGATGCAAAGCTTACAAGCAGCGCTTTGGTTTGGGGTTCTGACATGC 886
Query 844 TACAGCTTAACGATGTTGTCTCGGTGACATACAATGTTGGTCTTAGGCATTTCACTGTGC 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TACAGCTTAACGATGTTGTCTCGGTGACATACAATGTTGGTCTTAGGCATTTCACTGTGC 946
Query 904 ATGCTTATCCAGTTGGAAAGGTTTCTTGTGGCCTGTCTTGCTTCACGAAACCAAAGAGAA 963
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATGCTTATCCAATTGGCAAGGGTTCTTGTGGCCTGTCTTGCTTCACGAAACCAAAGAGAA 1006
Query 964 GCCGCAAGGATTTCCGCTTTGTCGCACCTACAGTTGAAGAAGCAGTTCAATGGGTGGCCA 1023
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1007 GCCGCAAGGATTTCCGCTTTGTCGCACCTACAGTAGAAGAAGCCGTTCAATGGGTGGCCA 1066
Query 1024 GTTTTGGAGACCAACAATGTTTTATCAACTGTTTACCACATCCTTTAGTCTCAAAGAAAC 1083
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1067 GTTTTGGAGATCAACAATGTTTTATCAACTGTTTGCCACATCCTTTAGTCGCAAAGAAAC 1126
Query 1084 AGGCTTCATCTGAGTTATTTTCGGTCCCCGTCGATACTCCTCCCGAGTTGGTCTTCAGGT 1143
||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 1127 AGGCTTCGTCTGAGTTATTTTCGGTCCCCATTGATACCCCTCCTGAGTTGGTCTTCAGGT 1186
Query 1144 GTAAGAGTGCACCCAAAATGCTTGTCATATTGAACCCTAGGTCAGGGCATGGACGATCTA 1203
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1187 GTAAGAGTGCACCCAAAATGCTTGTCATATTGAACCCTAGGTCAGGACATGGACGATCTA 1246
Query 1204 TCAAAGTGTTCCACAATGTAGTGGAGCCAATTTTCAAGCTGGCCGGGGTTAAGATGGAGG 1263
||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1247 TCAAAGTTTTCCATAATGTCGTGGAACCAATTTTCAAGCTGGCCGGAATTAAGATGGAGG 1306
Query 1264 TTGTCAAAACAACTAAAGCAGGTCACGCGAGAGAGTTGGCTTCCACTGTCGACATTAACT 1323
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1307 TTGTCAAAACAACTAAAGCAGGTCATGCGAGAGAATTGGCTTCCACTGTCGACATTAACT 1366
Query 1324 TGTGCTCAGACGGTATAATTTGTGTTGGAGGTGATGGAATCATCAATGAG 1373
| ||||| ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1367 TATGCTCTGACGGAATTATTTGTGTTGGAGGGGATGGAATCATCAATGAG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148895486824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5