BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489211
Length=2673
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23490.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 4013 0.0
AT5G23510.2 | Symbols: | unknown protein; LOCATED IN: cellular... 898 0.0
AT5G08440.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 651 0.0
AT5G23520.1 | Symbols: | smr (Small MutS Related) domain-conta... 62.1 3e-08
> AT5G23490.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G08440.1);
Has 202 Blast hits to 197 proteins in 48 species: Archae -
0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses
- 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr5:7919438-7926628
FORWARD LENGTH=2712
Length=2712
Score = 4013 bits (2173), Expect = 0.0
Identities = 2537/2707 (94%), Gaps = 48/2707 (2%)
Strand=Plus/Plus
Query 1 AAAAACTGATTGAGACAGACAGAGAGAAAGATTGCTTGAAGAAGACGAAGAC-AAAGGAG 59
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 15 AAAAACTGATTGAGACAGAGAGA-AGAAAGATTGCTTGAAGAAGACGAAGACAAAAGGAG 73
Query 60 GAAACTTTCTTCTCATTTCAATTAAAAAACCCAtttttttCTCTGGGTTTTTCTTTCTCA 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 74 GAAACTTTCTTCTCATTTCAATTAAAAAATCCATTTTTTTCTCTGGGTTTTTCTTTCTCA 133
Query 120 TGTGATTGCGCAATTGCTTCTTATCGTTTTCTCGCAGTCATTAC--CAT-TTCTCAAATC 176
|||||||| | ||||| ||||||||||||||||||| ||||||| | | |||| |||||
Sbjct 134 TGTGATTGTGTAATTGATTCTTATCGTTTTCTCGCAATCATTACGGCTTCTTCTGAAATC 193
Query 177 AACACGCTCAATTTCCTTCCTCGGAAAA--------TTTTGG--TTGTTCCTGTTTCATT 226
||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 194 AACACGCTCAATTTCCTTCCTTGGAAAATTTTGGGGTTTTGGTTTTGTTCCTGTTTCATT 253
Query 227 CGTGTGAGATTTGATTACTTAAACGCTCAGATGAAGTCATGATAATTAAGAAGCACAAGA 286
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 254 CGTGTGAGATTTGATTACTTAAGCGCTCAGATGAAATCATGATAATTAAGAAGCACAAGA 313
Query 287 GAGAGAAAATTAGAGGAGTCCTTTGGTCAAGTTT-TTGGGG-ATTTGGTTGGGATTTAGT 344
||||| ||||| | ||||||||||||||| ||| |||||| | ||| ||||||||||||
Sbjct 314 GAGAGGAAATT--A-GAGTCCTTTGGTCAA-TTTATTGGGGAACTTGATTGGGATTTAGT 369
Query 345 CTGCTTCGAAGTGAGGAGCTGAAGATGGAGAACGGCCACGAGGAGAGATTGGCCGAGAGA 404
| ||||| |||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 370 CAGCTTCAAAGTGAGGAGCTGAAGATGGAGAATGGCCATGAGGAAAGATTGGCGGAGAGA 429
Query 405 TTTTCCGGAGTGGGTCTT-GAAGATTATTCTCGTTCGGCTGAGAACGAGTTTAAGAACGA 463
||||||||| ||||| || ||||||| ||||| || | ||||||||||||||||||||||
Sbjct 430 TTTTCCGGATTGGGT-TTCGAAGATTCTTCTCTTTTGCCTGAGAACGAGTTTAAGAACGA 488
Query 464 CAACTTGTTTCAGGTCATCAAAGCTGTTGAAGCAGCAGAAACCACCATCAAGGAGCAGGT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CAACTTGTTTCAGGTCATCAAAGCTGTTGAAGCAGCAGAAACCACCATCAAGGAGCAGGT 548
Query 524 GGAGGAGAATACCCGATTAAAGGCTGAACTTCAGAGAAGTGCTCTGGAACTGGCCAAATA 583
||| ||||||| ||||||||| |||||||||||| |||||||||||||| |||| |||||
Sbjct 549 GGAAGAGAATAGCCGATTAAAAGCTGAACTTCAGCGAAGTGCTCTGGAATTGGCTAAATA 608
Query 584 TAAATCAGATGAATTCTTACCCCAAACTTCTAATCTCGGAGATCACTCAAATTCTACCAC 643
|||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 609 TAAATCAGATGAATCCTTGCCCCAAACTTCTAATATCGGAGATCACACAAATTCTACCAC 668
Query 644 TGTGTCCAGCCTGGTTCACCAGCCAGTTGACTGGAAGAAGAGTGTGGTGGTCAAAGCTTC 703
||||||| ||||||||||||||||||||||||||||| ||| | ||| ||||||||||
Sbjct 669 TGTGTCCCGCCTGGTTCACCAGCCAGTTGACTGGAAG-CCAGT-T-GTGATCAAAGCTTC 725
Query 704 GGATGCTGATTCATCAGGCTTGCTGGTTGTTCACCCCCATGTGAATGCTAATGGTGCAGA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 726 AGATGCTGATTCATCAGGCTTGCTGGTTGTTCACCCCCATGTGAATGCTAATGGTGAAGA 785
Query 764 AGCTACTGTGAGTAATCGTTTTGAAAGCCACTCTGCAGGAAA-AATAATTAATGGCATTG 822
|||||||||||||||||||||||||||||| |||| | |||| |||| |||||||| ||
Sbjct 786 AGCTACTGTGAGTAATCGTTTTGAAAGCCATTCTG-AAGAAACTATAAGTAATGGCACTG 844
Query 823 TCAGAGGAGATATAGATGGTGCTGGTCCCTCTCAATTTGATTCGTCATTATCTCCTATGA 882
| | | ||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 845 TTAAAAGAGCTATAGATGGTACTGGTCCCTCTCAATTCGATTCGTCAATATCTCCTATGA 904
Query 883 GAATGCGGTTGGAAGGAGAGCATGTGGCACACGTCAGTTCGTCTACTCATGGATCTATGC 942
||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 905 GAATGCGATTGGAGGGAGAGCATGACGCACACTTCAGTTCGTCTACTCATGGATCTATGC 964
Query 943 CATTTGGTGAAGTAAATCATTCAGGCAATGCATGGAAGCAGGACCTCATTCACAAGGTCC 1002
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CAGTTGGTGAAGTAAATCATTCAGGCAATGCATGGAAGCAGGACCTCATTCACAAGGTCC 1024
Query 1003 AGGAGCAGGAACAAGAAATTTCGCACTTGAAGAA-ATATCTTACTGACTGTTCTGTTAAG 1061
||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 1025 AGGAGCAGGAACAAGAAATTTCGCAGTTG-AGAAGATATCTTACTGACTGTTCTGTTAAG 1083
Query 1062 GAAGCCCAAATTCGCAATGAAAAATATGTTCTGGAAAAGCGAATTGCCTACATGCGTCTG 1121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1084 GAAGCCCAAATTCGCAATGAAAAATATGTTCTGGAAAAGAGAATTGCCTACATGCGTCTG 1143
Query 1122 GCATTTGATCAACAGCAACAAGATCTTGTTGATACTTCATCAAAAGCTCTCTCTTACAGA 1181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1144 GCATTTGATCAACAGCAACAAGATCTTGTTGATGCTTCATCAAAAGCTCTCTCTTACAGA 1203
Query 1182 CAAGAGATAATTGAGGAAAATATACGCCTAACATATGCCTTACAGGCTACACATCAAGAA 1241
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1204 CAAGAGATAATTGAAGAAAATATACGCCTAACATATGCCTTACAGGCTACACAGCAAGAA 1263
Query 1242 AGATCTACATTTGTATCATACTTGTTACCTCTGTTATCGGAGTATTCTCTGCAACCACAG 1301
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1264 AGATCTACATTTGTATCATACTTGTTACCTCTTTTATCAGAGTATTCTCTGCAACCACAG 1323
Query 1302 GTTTCTGATGCTCAGTCTATTGTTAGCAATGTGAAGGTTCTGTTTAAGCATCTACAAGAA 1361
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1324 GTTTCTGATGCTCAGTCTATTGTCAGCAATGTGAAGGTTTTGTTTAAGCATCTACAAGAA 1383
Query 1362 AAGCTCCTTCTTACTGAGACAAAGTTGAAGGAGTCAGAATATCAATTAGCACCTTGGCAG 1421
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1384 AAGCTCCTTCTTACTGAGACAAAGTTGAAGGAGTCGGAATATCAGTTAGCACCATGGCAG 1443
Query 1422 TCAGATGTGAACAACTCAAATGATTCCCCTTTGGCTCCATCGCGCTCAGCTGGTGTAGCA 1481
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1444 TCAGATGTGAACCACTCAAATGATTCCCCTTTGGCTCCATCGCGCTCAGCTGGTGTGGCA 1503
Query 1482 TTAACCCACTCCACAAAGGTTTCCGTGTATTCTCATGATCACACAGCCATAGACTGGAAT 1541
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 1504 TTAACCCACTCCACAAAAGATTCCATGTATTCTCATGATCACACAGCCATAGACTGGAAT 1563
Query 1542 TTGGAGCGCCAGCAGCAAGATGAGCCAAGTAGCTCAGCTGTGAGGAATTACCATCTTGAT 1601
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1564 TTGGAGCGCCAGCAGCAAGATGAGCCAGGTAGCTCAGCTGTGAGGAATTACCATCTTGAT 1623
Query 1602 GATTCTAGTACGTTTTCACCTCTTGTGAACAGTCAGTCGGCAGCCTTTGAGATGCATGTG 1661
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1624 GATTCTAGTACGTTTTCACCTCTTGAAAACAGTCAGTCGGCAGCCTTTGAGATGCATGTG 1683
Query 1662 CAACCAGGTACGAGTGTAGACGAATCTCCTGCTC-TGAAGAAAGTAGACGAAACTCCACC 1720
||||||||||| || || |||||||||||||||| | |||||||||||||||||||||||
Sbjct 1684 CAACCAGGTACCAGCGTGGACGAATCTCCTGCTCAT-AAGAAAGTAGACGAAACTCCACC 1742
Query 1721 TAAGCATGTTCAGTTTCTTGAGCCTATCAGCAAGACGGTGGTCGACGATGCCCAAAATTC 1780
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1743 TAAGCATGTCCAGTTTCTTGAGCCTATCAGCAAGACGGTGGTCGACGATGCTCAAAATCC 1802
Query 1781 ATCATATAAGTCTGCGTTTGATGACCCAAGCTCCTCAAATTCTCCTCTTTTGTCCCCAGT 1840
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 ATCATATGGGTCTGCGTTTGATGACCCAAGCTCCTCAAATTCTCCTCTTTTGTCCCCAGT 1862
Query 1841 TTTTGAAGAACCTCCTTCCTCCTTTTCTGACGATGGGGATGATGACCCGTTACCAGCTAT 1900
||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||| |||
Sbjct 1863 TTTTGAAGAACCTTCTTCCTCCTTTTCTGAGGGTGGAGATGATGACCCGTTACCAGGTAT 1922
Query 1901 AGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGATATGAACTTCAGGCTTGTGGTTA 1960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1923 AGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTGGTTA 1982
Query 1961 CTCCATTAATGGAACGACAAGTTGTAATTTTGAGTGGGTATGTCATCTAGAAGATGGATC 2020
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1983 CTCCATTAATGGAACAACAAGTTGTAATTTTGAGTGGGTCTGTCACCTAGAAGATGGATC 2042
Query 2021 TGTGAATTACATTGATGGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGA 2080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 TGTGAATTACATTGATGGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGA 2102
Query 2081 TTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGT 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 TTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGT 2162
Query 2141 GAAGGTTTTTGCCAATGATAATCGCAAGATCACTTGCCTTCCAGAGATGCAAAGCAATAT 2200
||||||||||||||||||||| |||||||| |||||| |||||| ||||| ||||||||
Sbjct 2163 GAAGGTTTTTGCCAATGATAACCGCAAGATTGCTTGCCATCCAGATATGCAGAGCAATAT 2222
Query 2201 AGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAA---CT---G-GTTT--C--C-T 2248
||||||||||||||||||||||||||||||||||||| || | | || | | |
Sbjct 2223 AGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGGTTGGCTTCGT 2282
Query 2249 GGATATATGGGAAGAAGCTACGTTATCTATTAAGAGAGAAGGTTACAGCATCAAGTGTAA 2308
|||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2283 GGATATATGGGAAGCAGCAACATTATCTATTAAGAGAGAAGGTTACAGCATCAAGTGTAT 2342
Query 2309 TAATGATCTCACAATTGCAGAAAAGTTCTCAGCTTCTACTGCTGTAACAATTCCGTTTGG 2368
|| |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||
Sbjct 2343 TAGTGATCTCACAATTGCAGAAAAGTTCTCAGCATCTACTACTGTAACCATTCCGTTTGG 2402
Query 2369 ACAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAGCATTCCTTACGAGCAGA 2428
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2403 GCAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTCCTTACGAGCAGA 2462
Query 2429 TAATGGATCGCCAGACCTTATCGGCTCAAGAGATGAAATAGTACTCACCCTGAGATTATT 2488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2463 TAATGGATCGCCAGACCTTATCGGCTCAAGAGATGAAATAGTACTCACCCTGAGATTATT 2522
Query 2489 TATCAAGAGGGCTCTGCAGAGAAAGAAGGGAAAGAAGAGAGTATTTTTGTTTAACAAATG 2548
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2523 TATCAAGAGGGCTCTGCAGAGGAAGAAGGGAAAGAAGAGAGTATTTTTGTTTAACAAATG 2582
Query 2549 AGACTTGGTATATAATAtttttttGGCTCTGTGGCTTTTGTCAGCTGCAAATCAATTAGA 2608
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2583 AGACTTGGTATATAATATTTTTTTGGCTCTCTTACTTTTGTCAGCTGCAAATCAATTAGA 2642
Query 2609 GATGAGGACTTAG-GACACAATTTATTCATGA-GAAAAATCAATCTTTGTTTATATAAAA 2666
||| ||||||| | ||||||||| |||||| | ||||| |||||||||||||||||||||
Sbjct 2643 GATAAGGACTT-GTGACACAATTCATTCAT-ATGAAAAGTCAATCTTTGTTTATATAAAA 2700
Query 2667 GCCCCAC 2673
||||||
Sbjct 2701 CCCCCAC 2707
> AT5G23510.2 | Symbols: | unknown protein; LOCATED IN: cellular_component
unknown; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G23490.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7926945-7929338
FORWARD LENGTH=1252
Length=1252
Score = 898 bits (486), Expect = 0.0
Identities = 613/671 (91%), Gaps = 21/671 (3%)
Strand=Plus/Plus
Query 1864 TTTCTGACGATGGGGATGATGACCCGTTACCAGCTATAGAGGACCTCCAAATTTCAGGAG 1923
||| ||| ||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||
Sbjct 332 TTT-TGATGATGGGGATGATGCCCCCTTACCAGCTTTAGAGAACCTCCAAATTTCAGGAG 390
Query 1924 AACCTTATCCTGGATATGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACGACAAGTT 1983
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 391 AACCTTATCCTGGACATGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACAACAAGTT 450
Query 1984 GTAATTTTGAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGCAA 2043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GTAATTTTGAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGCAA 510
Query 2044 AGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTC 2103
|| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 511 AGAAGCCAAATTACCTTGTCACTGCTGATGATGTTGGTTTATGTCTTGCTATTGAAGTTC 570
Query 2104 AGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATGATAATC 2163
|||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 571 AGCCTTTGGATGACCGGAACCGGAAGGGAGAGCTTGTGAAGGTTTTTGCCAATGATAATC 630
Query 2164 GCAAGATCACTTGCCTTCCAGAGATGCAAAGCAATATAGAGAAGACTCTTCATACTGGTC 2223
|||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 631 GCAAGATCGCTTGCCATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTC 690
Query 2224 ATGCTTCATACAAAA---CT---G-G-TT--TC-C-TGGATATATGGGAAGAAGCTACGT 2271
|||||||||||||| || | | || | | || |||||||||||| ||||||||
Sbjct 691 ATGCTTCATACAAAGTTTCTCTTGCGATTGGTTTCGTGCATATATGGGAAGCAGCTACGT 750
Query 2272 TATCTATTAAGAGAGAAGGTTACAGCATCAAGTGTAATAATGATCTCACAATTGCAGAAA 2331
|||||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 751 TATCTATTGAGAGAGAAGGTTACACCATCAAGTGTAATAACGATCTCACAATTACAGAAA 810
Query 2332 AGTTCTCAGCTTCTACTGCTGTAACAATTCCGTTTG-GACAACCGGCAGAACTTGTTATC 2390
|||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||||
Sbjct 811 AGTTCTCAGCTTCTACTGCTGTAAAAATTCCGTTTGAGA-AACCTGCAGAACTTGTTATC 869
Query 2391 ATTGGTTCTGATGGTAGTGAGCATTCCTTACGAGCAGATAATGGATCGCCAGACCTTATC 2450
|||||||||||||||||||| |||| |||||||| |||||||| || ||||||| |||
Sbjct 870 ATTGGTTCTGATGGTAGTGAACATTGCTTACGAGTAGATAATGAATGGCCAGAC---ATC 926
Query 2451 GGCTCAAGAGATGAAATAGTACTCACCCTGAGATTATTTATCAAGAGGGCTCTGCA--GA 2508
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 927 AGCTCAAGAGATGAAATAGTACTCACCCTGAGATCATTTATCAAGACGGCTCTGCAAAGA 986
Query 2509 G-AAAGAAGGG 2518
| ||| |||||
Sbjct 987 GGAAAAAAGGG 997
> AT5G08440.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G23490.1). | chr5:2720669-2727167 FORWARD
LENGTH=2884
Length=2884
Score = 651 bits (352), Expect = 0.0
Identities = 816/1029 (79%), Gaps = 76/1029 (7%)
Strand=Plus/Plus
Query 365 GAAGATGGAGAACGGCCACGAGGAGAGA-TTGGCCGAGAGATTTTCCGGAGTGGGTCTTG 423
||| ||||| |||||||| ||||| ||| || |||||||| ||||| |||||||| || |
Sbjct 365 GAATATGGACAACGGCCATGAGGAAAGACTT-GCCGAGAGGTTTTCGGGAGTGGGACTCG 423
Query 424 AAG-ATTATTCTCGTTCGGC-TGAGAACGA-GTTTAAGAACGACAACTTGTTTCAGGTCA 480
|| || | ||| |||| | ||| ||||| | |||| ||||| | ||||||||| || |
Sbjct 424 GAGAATCA-TCTGGTTC-CCATGAAAACGACG-TTAAAAACGATAGCTTGTTTCAAGTTA 480
Query 481 TCAAAGCTGTTGAAGCAGCAGAAACCACCATCAAGGAGCAGGTGGAGGAGAATACCCGAT 540
||||||||||||||||||||||| |||| |||||| |||||||||| ||||||| || |
Sbjct 481 TCAAAGCTGTTGAAGCAGCAGAAGCCACAATCAAGCAGCAGGTGGAAGAGAATAACCTCT 540
Query 541 TAAAGGCTGAACTTCAGAGAAG-TGCTCTGGAACTGGCCAAATATAAATCA-GATGAATT 598
|||||||||||||||||||||| | |||||| || ||||||||||||||| || ||||
Sbjct 541 TAAAGGCTGAACTTCAGAGAAGAT-ATCTGGAGCTTGCCAAATATAAATCAGGA-GAATC 598
Query 599 CTTACCCCAAACTTCTAATCTCGGAGATCACTCAAATTCTACCA-C--TGTGTCCAGCCT 655
||| ||||| || ||| |||| ||| | ||||| ||| |||| | | || || | ||
Sbjct 599 CTTGCCCCAGACATCTGATCTAGGAAACCACTCTAATACTACAACCGGTGGGT-CTTCCC 657
Query 656 GGTT-CACCAGCCAGTTGACTGG-A--AG--AAG-AG-T--GTGG--TGG-----TCAAA 698
||| |||||| | | | |||| | || || | | | || || ||||
Sbjct 658 CGTTACACCAGTCGGCCG-CTGGTATTAGTCTAGTTGATCGGAGGAAAGGCAAAATCAAT 716
Query 699 GCTTCGGATGCTGATTCATCAGGCT-TGCTGGTTGTTCACCCCCATGTGAATGCTAATGG 757
||||| | |||| || | ||||| | ||||||||||||||| |||||| || | |||||
Sbjct 717 GCTTCAGCTGCTCATCCGTCAGG-TATGCTGGTTGTTCACCAGCATGTGCATCCAAATGG 775
Query 758 TGCA-GAAGCTACTGTGAGTAATCGTTTTGAAAG-CCA-C--TCTGCA-GGAAAAATAAT 811
| | |||||||||||||||||||||| || ||| ||| | |||| | |||| || |
Sbjct 776 AG-AGGAAGCTACTGTGAGTAATCGTTCTG-AAGACCACCATTCTG-AGGGAATCATGAC 832
Query 812 TAATGGCATTGTCAGAGGAGA-TATAGATGGTGCTGGTCCCTCTCAA-----TT--T-G- 861
||||||||||||||||||| | | ||| ||||| || |||||||| || | |
Sbjct 833 TAATGGCATTGTCAGAGGA-ACTGTAGGTGGTGGGGGAACCTCTCAATTGTCTTCGTCGC 891
Query 862 -AT-T-C---GTCATTATCTCCTATGAGAATGCGGTTGGAAGGAGAGCATGTGGCACACG 915
|| | | |||||||||||||||||| || ||||||||||| |||| ||||
Sbjct 892 CATCTACAATATCATTATCTCCTATGAGACCGCTATTGGAAGGAGATCATGACTTACACA 951
Query 916 TCAGTTCGTCTACTCATGGATCT-ATGCCATTTGGTGAAGTAAATCATTCAGGCAATGCA 974
||| |||||| |||||| || | |||||| | |||||||||||| |||| || | ||||
Sbjct 952 TCAACTCGTCTTCTCATGAAT-TGATGCCAGTAGGTGAAGTAAATAATTCGGGGACTGCA 1010
Query 975 TGGAAGCAGGACCTCATTCACAAGGTCCAGGAGCAGGAACAAGAAATTTCGCACTTGAAG 1034
||||||||||| ||||||||||||||||| || || || ||||| |||| || ||| | |
Sbjct 1011 TGGAAGCAGGAACTCATTCACAAGGTCCAAGAACAAGACCAAGAGATTTTGCGCTT-ACG 1069
Query 1035 -AAATATCTTACTGACTGTTCTGTTAAGGAAGCCCAAATTCGCAATGAAAAATATGTTCT 1093
||||||||| |||| | |||| ||||||| |||||| |||||||||||||||||| |
Sbjct 1070 AAAATATCTTGCTGATTATTCTACCAAGGAAGTCCAAATACGCAATGAAAAATATGTTTT 1129
Query 1094 GGAAAAGCGAATTGC-CTACATGCG-TCTGGCATTTGATCAACAGCAACAAGATCTTGTT 1151
||||||||| ||||| | ||||||| || ||||||||| ||||| |||||||| ||||||
Sbjct 1130 GGAAAAGCGTATTGCGC-ACATGCGTTC-GGCATTTGACCAACAACAACAAGACCTTGTT 1187
Query 1152 GATACTTCATCAAAAGCTCTCTCTTACAGACAAGAGATAATTGAGGAAAATATACGCCTA 1211
||| || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1188 GATGCTGCATCAAAAGCTCTTTCTTACAGACAAGAGATCATTGAGGAAAATATACGCCTA 1247
Query 1212 ACATATGCCTTACAGGCTACACATCAAGAAAGATCTACA-TTTGTATC-ATACTTGTTAC 1269
|||||||||||||||||| || | ||||| || ||| | |||||||| || ||||||||
Sbjct 1248 ACATATGCCTTACAGGCTGCAGAGCAAGAGAGGTCT-CTGTTTGTATCGAT-CTTGTTAC 1305
Query 1270 CTCTGT-TATCGGAGTATTCTCTGCAACCACAGGTTTCTGATGCTCAGTCTATTGTTAGC 1328
|||| | |||| || ||||| ||||| |||||| | || ||| |||||||||||||||||
Sbjct 1306 CTCT-TCTATCAGAATATTCGCTGCATCCACAGATCTCGGATTCTCAGTCTATTGTTAGC 1364
Query 1329 AATGTGAAG 1337
| |||||||
Sbjct 1365 AGTGTGAAG 1373
> AT5G23520.1 | Symbols: | smr (Small MutS Related) domain-containing
protein | chr5:7929351-7931793 REVERSE LENGTH=1799
Length=1799
Score = 62.1 bits (33), Expect = 3e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Minus
Query 2641 AAAAATCAATCTTTGTTTATATAAAAGCCCCAC 2673
|||||||||||||||||||||||||||||||||
Sbjct 1793 AAAAATCAATCTTTGTTTATATAAAAGCCCCAC 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132741731178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5