BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489214
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23530.1 | Symbols: AtCXE18, CXE18 | carboxyesterase 18 | ch... 1605 0.0
> AT5G23530.1 | Symbols: AtCXE18, CXE18 | carboxyesterase 18 |
chr5:7932966-7934436 REVERSE LENGTH=1471
Length=1471
Score = 1605 bits (869), Expect = 0.0
Identities = 1014/1084 (94%), Gaps = 10/1084 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaTGGCGACAGATTCTCAACCAAACCAAAAGCTAACGCTTCCGTTAAAAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 AAAAAAAAAAATGGCGACAGATTCTCAACCAAACCAAAAGCTAACGCTTCCGTTAAAAAC 113
Query 61 AAGAATCGCTCTCACCGTTATTTCCACCATGACCGATAACGCTCAACGTCCCGACGGAAC 120
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 114 AAGAATCGCTCTCACCGTTATCTCCACCATGACCGATAACGCTCAACGTCCTGACGGAAC 173
Query 121 CATCAACCGCCGTTTCCTCCGCCTCTTCGATTTCCGTGCTCCTCCCAATCCTAAACCTGT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 174 TATCAACCGCCGTTTCCTCCGCCTCTTCGATTTCCGTGCTCCTCCCAATCCTAAACCCGT 233
Query 181 CAAC-TCCGTCTCCACCACCGATTTCGTCGTGGATCAATCTCGTGATCTCTGGTTCCGAT 239
|||| | |||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 234 CAACAT-CGTCTCCACCTCCGATTTCGTCGTGGATCAATCCCGTGATCTCTGGTTCCGAT 292
Query 240 TGTACACTCCACACGTCTCCGGCGATAAAATCCCCGTCGTTGTTTTCTTCCACGGCGGTG 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TGTACACTCCACATGTCTCCGGCGATAAAATCCCCGTCGTTGTTTTCTTCCACGGCGGTG 352
Query 300 GTTTCGCTTTCCTCAGTCCTAATGCGTATCCTTACGATAATGTATGCCGGAGATTCGCTA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GTTTCGCTTTCCTCAGTCCTAATGCGTATCCTTACGATAATGTATGCCGGAGATTCGCTA 412
Query 360 GGAAATTACCTGCTTACGTCATCTCCGTTAACTACCGTCTCGCTCCAGAGCATCGTTATC 419
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 413 GGAAATTACCTGCTTATGTCATCTCCGTTAACTACCGTCTCGCTCCGGAGCATCGTTATC 472
Query 420 CTGCTCAATACGACGACGGATACGATGCTTTGAAGTTTC-TCGAGGAGAATCACGGCAAG 478
||||||||||||||||||| | |||||||||||||| | |||||||||||||||| |
Sbjct 473 CTGCTCAATACGACGACGGTTTCGATGCTTTGAAGTA-CATCGAGGAGAATCACGGTTCG 531
Query 479 GTTCTTCCGGCGAACGCTGATCTGTCGAGATGCTTCTTCGCCGGAGACAGCGCTGGTGGA 538
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 532 ATTCTTCCGGCGAACGCTGATCTCTCGAGATGCTTCTTCGCCGGAGACAGTGCAGGTGGA 591
Query 539 AACATCGCTCACAACGTCGCGGTTCGAATTTGCCGTGAGCCGCGGGGATGTTTCACCGCC 598
|||||||| |||||||||||| |||||||||| || ||||||||| || ||||||||||
Sbjct 592 AACATCGCGCACAACGTCGCGATTCGAATTTGTCGCGAGCCGCGGTCATCTTTCACCGCC 651
Query 599 GTGAAACTCATCGGACTCATATCGATCCAACCTTTCTTCGGCGGAGAAGAGAGAACGGAG 658
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 652 GTGAAACTCATCGGACTTATCTCGATTCAACCTTTCTTCGGCGGAGAAGAGAGAACGGAA 711
Query 659 GCGGAGAAACGTCTCGTCGGAGCTCCTCTGGTTTCGCCGGACCGAACAGATTGGTGCTGG 718
|||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 712 GCGGAGAAACAACTCGTCGGAGCTCCTTTGGTTTCACCGGACCGAACAGATTGGTGCTGG 771
Query 719 AAAGCGATGGGATTACACCGGGATCATGAAGCGGTTAACGTCGGCGGACCAAACGCGGTG 778
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AAAGCGATGGGATTAAACCGGGATCATGAAGCGGTTAACGTCGGCGGACCAAACGCGGTT 831
Query 779 GATATATCGGATCTGGAGTATCCGGAGACGATGGTGGTTGTTGCTGGGTTTGATCCGTTA 838
|||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 832 GATATATCGGGTCTGGATTATCCGGAGACGATGGTGGTAGTAGCTGGGTTTGATCCGTTA 891
Query 839 CAAGATTGGCAAAGAAGTTACTACGAGTGGATAAAGTTATCCGGGAAAAGAGCAACGTTA 898
|||||||||| |||||||||||||||||| ||||||||| ||| |||| ||||||||||
Sbjct 892 AAAGATTGGCAGAGAAGTTACTACGAGTGGTTAAAGTTATGCGGTAAAAAAGCAACGTTA 951
Query 899 ATCGAGTATCCAAACATGTTTCATGCTTTTTATATTTTTCCTGAATTACCGGAGTCGGGT 958
||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||| |||||
Sbjct 952 ATCGAATATCCAAACATGTTTCATGCGTTTTACATTTTCCCTGAATTGCCTGAGGCGGGT 1011
Query 959 CAGTTAATTATGCGGATTAAGGATTTTGTTGCTGAGCGCGTGGCTTCACTCTCCGCTTAA 1018
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1012 CAGTTAATTATGCGGATTAAGGATTTTGTTGATGAGCGCGTGGCTTCGCTCTCCGCTTAA 1071
Query 1019 TCACCATCGATAATAATGGATTTGTTAAATTAGCTCGATTAAATTAATAATAATGTATTA 1078
||||| ||| |||| |||||| | |||||||||||| | | | |||||||||||||||
Sbjct 1072 TCACCTTCGCTAATGATGGATAT-TTAAATTAGCTC-A--A--TGAATAATAATGTATTA 1125
Query 1079 AGCT 1082
||||
Sbjct 1126 AGCT 1129
Score = 259 bits (140), Expect = 5e-68
Identities = 247/292 (85%), Gaps = 34/292 (12%)
Strand=Plus/Plus
Query 1083 TCTGTTTTCATTATTAATCAAATGTTCAACTTTAAGTGAA---------T-G----TAAA 1128
||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct 1175 TCTATTTTCATTATTAATCAAGTGTTCAACTTTAAGTGAATGTTTGGGTTGGTTATTAAA 1234
Query 1129 CTTGTTTTAAAGC-T-TGAGACGTGGGATTTTTGAACTTGTAGTAAAATACAAATGTTGG 1186
||||||||||||| | ||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 1235 CTTGTTTTAAAGCTTGTGAGACGTGGGGTTTTTGTACTTGTAGTAAAATACCAATGTTGG 1294
Query 1187 TTTC---AT----TATAGTCAGGTTTGTTGTACTTATTAAAGGTACGAGT-GGAATACAA 1238
|||| || ||||||||||||||||||||||||| | ||||||| || ||||||
Sbjct 1295 TTTCATTATAGACTATAGTCAGGTTTGTTGTACTTATT--A--TACGAGTGGGGATACAA 1350
Query 1239 AACAATGGAATTGATTATTTGTACGGTGAGATTCAGCAATACCGGCGGGTAGGTGAGTGA 1298
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1351 AACAATGGAATTGATTATTTGTACGGTGAGATTCAACAATACCGG----TAGGTGAGTGA 1406
Query 1299 GTGA-GTCCATCCCTTTAGTTTGGTGAAAAGTGAGCCACAGTTAATGCATTT 1349
| | ||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1407 CT-ATGTCTATCCCTTAAGTTTGGTGAAAAGTGAGCCACATTTAATGCATTT 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5