BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489217
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23550.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 1358 0.0
> AT5G23550.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr5:7939611-7941628 REVERSE LENGTH=980
Length=980
Score = 1358 bits (735), Expect = 0.0
Identities = 872/932 (94%), Gaps = 33/932 (4%)
Strand=Plus/Plus
Query 1 CATGGCGTAATTTTGCAGAGAAGATCCAACCATACTTGAGTTCTGCTGTCACAATTTGAG 60
||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 17 CATTGCGTAATTTTGCAGAGAAGATCCAACCATACTTCAGTTCTACTGTCACAATTTGAG 76
Query 61 AAGAAGAAGCGTGAGATCTGA--GCT----CTA--AA-ACA-AG----G--TA-A-AAAG 102
||||||||||||||||||||| || ||| || | | || | || | ||||
Sbjct 77 AAGAAGAAGCGTGAGATCTGATCACTAGAACTAGGAAGAAAGAGCTTAGACTACAGAAAG 136
Query 103 A-G-CTT--AGAGATGGATAAGATGAATCAGGCTTTTGAGAAGATGAAGATGTTGGTTGG 158
| | ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 137 AGGACTTACAGAGATGGATAAAATGAATCAGGCTATTGAGAAGATGAAGATGTTGGTTGG 196
Query 159 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGAAGAAGAAAGCTCGCTCTCATTCATGGA 218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 197 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGATGAAGAAAGCTCGCTCTCATTCATGGA 256
Query 219 AGATCTTAATCGCAATTGCGCTTTAACCACCAAACAGAGATTCTATGGCTTTGCAATTTG 278
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 257 AGATCTTAATCGCAATTGCGCTTTAACTACCAAACAGAGATTTTATGGCTTTGCAATTTG 316
Query 279 CTTGTCAGCAGGCTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCAGTCAA 338
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 317 CTTGTCAGCAGGTTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCGGTCAA 376
Query 339 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 436
Query 399 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 496
Query 459 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGTAACAAGCTTCT 518
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 497 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGCAACAAGCTTCT 556
Query 519 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 616
Query 579 CCCTTTTGCAAGGACCATGGTCTCAAGGATCTTCATGACTTGTTTTGACACCGAGTTTTA 638
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 617 CCCTTTTGCAAGAACCATGGTCTCAAAGATCTTCATGACTTGTTTTGACACCGAGTTTTA 676
Query 639 AGCAACAGTATACACA--TCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGT 696
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGCTACAGTTTACACACATCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGC 736
Query 697 TGAACGATTGGTCCAACTCTC-TCCAAATGTGTTCAAAGCTGGACTTGTTTGATGCACCG 755
||||||||||||| || |||| |||||||||||||||||| |||||||||||||||||||
Sbjct 737 TGAACGATTGGTC-AA-TCTCCTCCAAATGTGTTCAAAGCAGGACTTGTTTGATGCACCG 794
Query 756 AG-AACGTGCCATGCCCTATATGGCTTATAATTGCCTCTTTACATCAAGTTC-CTGTCTT 813
| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 795 -GTAACGTGCCATGCCCTTTATGGCTTATAATTGCCTCTTTACATCAAGTTCAC-GTCTT 852
Query 814 TACAAATCCTAGCACAGtttttttGTATATTTTGCTGTGAAACTTAACATAGATTTGGAA 873
|||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||
Sbjct 853 CACAAATCCTAGCACAGTTTTTT-GTATATTT-GCTGTGGAACTTAACGTAGATTTGGAT 910
Query 874 GTGGTTGCTGTTTGTTACAAAATTAAGATGTT 905
|| |||||||||| |||||||||||||||||
Sbjct 911 GTTATTGCTGTTTGCTACAAAATTAAGATGTT 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44206049360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5