BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489217 Length=905 Score E Sequences producing significant alignments: (Bits) Value AT5G23550.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 1358 0.0 > AT5G23550.1 | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:7939611-7941628 REVERSE LENGTH=980 Length=980 Score = 1358 bits (735), Expect = 0.0 Identities = 872/932 (94%), Gaps = 33/932 (4%) Strand=Plus/Plus Query 1 CATGGCGTAATTTTGCAGAGAAGATCCAACCATACTTGAGTTCTGCTGTCACAATTTGAG 60 ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 17 CATTGCGTAATTTTGCAGAGAAGATCCAACCATACTTCAGTTCTACTGTCACAATTTGAG 76 Query 61 AAGAAGAAGCGTGAGATCTGA--GCT----CTA--AA-ACA-AG----G--TA-A-AAAG 102 ||||||||||||||||||||| || ||| || | | || | || | |||| Sbjct 77 AAGAAGAAGCGTGAGATCTGATCACTAGAACTAGGAAGAAAGAGCTTAGACTACAGAAAG 136 Query 103 A-G-CTT--AGAGATGGATAAGATGAATCAGGCTTTTGAGAAGATGAAGATGTTGGTTGG 158 | | ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 137 AGGACTTACAGAGATGGATAAAATGAATCAGGCTATTGAGAAGATGAAGATGTTGGTTGG 196 Query 159 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGAAGAAGAAAGCTCGCTCTCATTCATGGA 218 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 197 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGATGAAGAAAGCTCGCTCTCATTCATGGA 256 Query 219 AGATCTTAATCGCAATTGCGCTTTAACCACCAAACAGAGATTCTATGGCTTTGCAATTTG 278 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 257 AGATCTTAATCGCAATTGCGCTTTAACTACCAAACAGAGATTTTATGGCTTTGCAATTTG 316 Query 279 CTTGTCAGCAGGCTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCAGTCAA 338 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 317 CTTGTCAGCAGGTTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCGGTCAA 376 Query 339 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 436 Query 399 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 437 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 496 Query 459 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGTAACAAGCTTCT 518 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 497 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGCAACAAGCTTCT 556 Query 519 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 557 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 616 Query 579 CCCTTTTGCAAGGACCATGGTCTCAAGGATCTTCATGACTTGTTTTGACACCGAGTTTTA 638 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 617 CCCTTTTGCAAGAACCATGGTCTCAAAGATCTTCATGACTTGTTTTGACACCGAGTTTTA 676 Query 639 AGCAACAGTATACACA--TCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGT 696 ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 677 AGCTACAGTTTACACACATCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGC 736 Query 697 TGAACGATTGGTCCAACTCTC-TCCAAATGTGTTCAAAGCTGGACTTGTTTGATGCACCG 755 ||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||| Sbjct 737 TGAACGATTGGTC-AA-TCTCCTCCAAATGTGTTCAAAGCAGGACTTGTTTGATGCACCG 794 Query 756 AG-AACGTGCCATGCCCTATATGGCTTATAATTGCCTCTTTACATCAAGTTC-CTGTCTT 813 | ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 795 -GTAACGTGCCATGCCCTTTATGGCTTATAATTGCCTCTTTACATCAAGTTCAC-GTCTT 852 Query 814 TACAAATCCTAGCACAGtttttttGTATATTTTGCTGTGAAACTTAACATAGATTTGGAA 873 |||||||||||||||||||||| |||||||| |||||| |||||||| |||||||||| Sbjct 853 CACAAATCCTAGCACAGTTTTTT-GTATATTT-GCTGTGGAACTTAACGTAGATTTGGAT 910 Query 874 GTGGTTGCTGTTTGTTACAAAATTAAGATGTT 905 || |||||||||| ||||||||||||||||| Sbjct 911 GTTATTGCTGTTTGCTACAAAATTAAGATGTT 942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44206049360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5