BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489218
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing prot... 2974 0.0
> AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing protein
/ XS zinc finger domain-containing protein-related | chr5:7943124-7946050
FORWARD LENGTH=2145
Length=2145
Score = 2974 bits (1610), Expect = 0.0
Identities = 1925/2068 (93%), Gaps = 57/2068 (3%)
Strand=Plus/Plus
Query 1 AAAATGAGTTCTAGGGCTGGTCCAATGTCTAAGGGAAAGAACGTTTCTCAGGGTGGTTCT 60
|||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
Sbjct 89 AAAATGAGTTCTAGGGCTGGTCCAATGTCTAAGGAAAAGAACG--T-TCAGGGTGGTTAT 145
Query 61 AAGCCTGAGGTTGAACAGTTGGTGAAAGGTTTGGCTGGGACGAAACTGGCTCCTTCACAA 120
| ||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||
Sbjct 146 AGGCCTGAGGTTGAACAGTTGGTTCAAGGTTTGGCAGGGACGAGACTGGCTTCTTCACAA 205
Query 121 GATGATGGAGGAGAATGGGAGGTCATTTCCAAGAAGAACAAGAACAAACCTGGTAACACT 180
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 206 GATGATGGAGGAGAGTGGGAGGTCATTTCCAAGAAGAACAAGAACAAACCAGGAAACACT 265
Query 181 TCTGGAAAAGCTTGGGTTTCTCAGAATTCGAACCCTCCTAGAGCTTGGGGTGGTCAGCAA 240
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 266 TCTGGAAAAACTTGGGTTTCTCAGAATTCGAATCCTCCTAGAGCTTGGGGTGGTCAGCAG 325
Query 241 CAAGGGAGAGGTAACAACG----T-----A-G---C------T--GGGAGAGGTAATGGC 279
||||||||||||| ||||| | | | | | ||||||||||| |||
Sbjct 326 CAAGGGAGAGGTAGCAACGTATCTGGGAGAGGAAACAATGTATCCGGGAGAGGTAACGGC 385
Query 280 AATGGTCGGGGCACTCAAGCTAACATATCTGGTCGGGGACGAGCGTTGAGCAAAAAGTAT 339
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 386 AATGGTCGGGGCATTCAAGCTAACATATCTGGTCGGGGACGAGCGTTGAGCAGAAAGTAT 445
Query 340 GATAACCACTTTGTGGCACCCCCACCTGTAACTCGCCCTCCTTTGGAAGGTGGATGGAAT 399
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 446 GATAACAACTTTGTGGCACCCCCACCTGTATCTCGCCCTCCTTTGGAAGGAGGATGGAAT 505
Query 400 TGGCAGGCAAGAGGAGGTTCTGCTCAGCACACAGTTGTGCAGGAGGTTCCTAACATGGAG 459
|||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||
Sbjct 506 TGGCAGGCAAGAGGAGGTTCTGCTCAGCACACAGCTGTGCAGGAGTTTCCTGACGTGGAG 565
Query 460 GATGATCTGGATAATGCTTCTGAGGAAGAGAATGATTCCGATGCTTTGGATGATTCTGAT 519
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GATGATGTGGATAATGCTTCTGAGGAAGAGAATGATTCCGATGCTTTGGATGATTCTGAT 625
Query 520 GACGATCTTGCAAGTGATGATTATGACTCGGATGTGAGTCAACAGAGCCATGGATCACGA 579
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 626 GACGACCTTGCAAGTGATGATTATGACTCGGATGTGAGTCAAAAGAGCCATGGATCACGA 685
Query 580 AAGCAGAATAAGTGGTTCAAAAAGTTCTTCGACAGCTTGGATAGCTTGTCGATCGAGCAG 639
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 686 AAGCAGAATAAGTGGTTCAAAAAGTTCTTTGGCAGCTTGGATAGCTTGTCGATCGAGCAG 745
Query 640 ATAAATGAACCGCAGAGGCAGTGGCATTGTCCAGCTTGTCAGAACGGACCTGGTGCCATC 699
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 ATAAATGAACCACAGAGGCAGTGGCATTGTCCAGCTTGTCAGAACGGACCTGGTGCCATC 805
Query 700 GACTGGTATAACCTGCACCCTCTACTAGCTCATGCGAGGACAAAAGGAGCTAGGCGAGTT 759
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GATTGGTATAACCTGCACCCTCTACTAGCTCATGCGAGGACAAAAGGAGCTAGGCGAGTT 865
Query 760 AAGCTCCATAGAGAATTGGCTGAAGTTTTAGAAAAGGATCTAGAGATGAGAGGCGCATCT 819
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 866 AAGCTCCATAGAGAATTGGCTGAAGTTTTAGAAAAGGATCTACAGATGAGAGGCGCATCT 925
Query 820 GTCATTCCTTGTGGTGAGATTTATGGGCAGTGGAAGGGTTTGGGTGAGGACGAGAAGGAT 879
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 926 GTCATTCCTTGTGGTGAGATTTATGGGCAGTGGAAGGGTTTGGGTGAGGATGAAAAGGAT 985
Query 880 CATGAAATTGTCTGGCCTCCAATGGTCATCATCATGAATACTAGACTGGACAAGGACGAT 939
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 986 TATGAAATTGTCTGGCCTCCAATGGTCATCATCATGAATACTAGACTGGATAAGGACGAT 1045
Query 940 AATGATAAGTGGCTCGGCATGGGCAACCAAGAGCTGCTGGAATACTTCGACAAGTATGAG 999
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AACGATAAGTGGCTCGGCATGGGCAACCAAGAGCTGCTGGAATACTTCGACAAGTATGAG 1105
Query 1000 GCTCTTAGAGCACGCCATTCCTATGGTCCACAGGGCCATCGTGGGATGAGTGTTCTGATG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GCTCTTAGAGCACGCCATTCCTATGGTCCACAGGGCCATCGTGGGATGAGTGTTCTGATG 1165
Query 1060 TTTGAGAGCAGTGCCACTGGCTATTTGGAGGCTGAACGCCTCCACCGGGAGTTAGCTGAG 1119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1166 TTTGAGAGCAGTGCCACTGGCTATTTGGAGGCCGAACGCCTCCACCGGGAGTTAGCTGAG 1225
Query 1120 ACAGGGTTAGATAGAAACGCCTGGGTTC-GTCGGCGCGGTATGTTTTCTGGAGGTGTTCG 1178
| ||||||||||||| ||||||| || | | ||| ||||||||||||||||||||||
Sbjct 1226 ATGGGGTTAGATAGAATTGCCTGGGGTCAGAAG-CGCAGTATGTTTTCTGGAGGTGTTCG 1284
Query 1179 CCAACTGTATGGCTTCCTTGCAACCAAGCAAGATCTGGACATATTCAATCAACACTCTCA 1238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1285 CCAACTGTATGGCTTCCTTGCAACGAAGCAAGATCTGGACATATTCAATCAACACTCTCA 1344
Query 1239 AGGCAAAACAAGGCTGAAATTCGAGATGAAATCTTACCAAGAGATGGTTGTAAAGGAGCT 1298
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1345 AGGCAAAACAAGGCTGAAATTCGAGTTGAAATCATACCAAGAGATGGTTGTAAAGGAGCT 1404
Query 1299 GAGGCAGATCTCTGAGGACAATCAGCAGCTGAACTACTTTAAGAACAAGCTCTCAAAACA 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GAGGCAGATCTCTGAGGACAATCAGCAGCTGAACTACTTTAAGAACAAGCTCTCAAAACA 1464
Query 1359 GAACAAGCACGCCAAGG-GTCTTGAGGAATCTCTGGAAATTATGAGCGAGAGGCTGCGT- 1416
||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 1465 GAACAAGCACGCCAAGGTG-CTTGAGGAATCTCTGGAAATTATGAGCGAGAAGCTGCGTA 1523
Query 1417 GAAACTGCAGAGAATTATCGTATAGTGAGACAGAGAACAAAGATGCAGCATGAACAGAAC 1476
||| |||||||| || |||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1524 GAA-CTGCAGAGGATAATCGGATCGTGAGACAGAGAACTAAGATGCAGCATGAACAGAAC 1582
Query 1477 AGAGAAGAGATGGATGCACAAGACAGGTTTTTCAAGGATGAAATCAAACAGATACATAAG 1536
|| ||||||||||||||||| ||||||||||||| |||| |||||||||||| ||| |
Sbjct 1583 AGGGAAGAGATGGATGCACACGACAGGTTTTTCATGGATTCAATCAAACAGATCCATGA- 1641
Query 1537 AA-AAGAGATGCAAAGGAGGAGAATTTCGAGATGTTGCAGCAGCAGGAACGTGCCAAGGT 1595
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 AAGAAGAGACGCAAAGGAGGAGAATTTCGAGATGTTGCAGCAGCAGGAACGTGCCAAGGT 1701
Query 1596 TGTTGACCAGCAGCAGAAGAACACCAATCCCTCTAGCAACGACGATTTCCGAAAAAGAGC 1655
||||| |||||||||| |||||| |||||||||||||| ||||||| |||||| |||||
Sbjct 1702 TGTTGGCCAGCAGCAGCAGAACATTAATCCCTCTAGCAATGACGATTGCCGAAAGAGAGC 1761
Query 1656 TGAGGAAGTGTCAAGCTTCATCGAGTTTCaagagaaagagatggaggagtttgtggagga 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1762 TGAGGAAGTGTCAAGCTTCATCGAGTTTCAAGAGAAAGAGATGGAGGAGTTTGTGGAAGA 1821
Query 1716 gagggagatgctgataaaagagcaagagaagaagaTGGCAGACATGAAGACGAGGCATTA 1775
||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |
Sbjct 1822 GAGGGAGATGCTGATAAAAGATCAAGAGAAGAAGATGGAAGACATGAAGAAGAGGCATCA 1881
Query 1776 CGAGGAGATGCTTGATCTGGAGAAAGAGTTTGATGAGGCTTTGGAACAGCTCATGTACAA 1835
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1882 CGAGGAGATATTTGATCTGGAGAAAGAATTTGATGAGGCTTTGGAACAGCTCATGTACAA 1941
Query 1836 GCATGGCCTTCACAATGAAGATGATTGAGACAAAGGAGGTCTGGTACACAAGACAAGACT 1895
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1942 GCATGGCCTTCACAATGAAGATGATTGAGACAAA--AG-TCTGGTACACAAGACAAGACT 1998
Query 1896 AAGTTTCTTTGTTTTGCTTTTGGTATGTCGGCAAA-TAGGAGATCTGAGAGA----A--- 1947
||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 1999 AAGTTTCTTTGTTTTGCTTTTGGTATGTCGG-AAAGTAGGAGATCTGAGAGACTCCATTT 2057
Query 1948 AA-T-CTA--A---------GGAGATTATAGACTACTATTATCCAATTTTTAGTAGACGG 1994
|| | ||| | |||||||||||| || ||| |||||||||||||||||||
Sbjct 2058 AAATACTAGGACAAATCTAAGGAGATTATAGATTATTATCCTCCAATTTTTAGTAGACGG 2117
Query 1995 CTCTAAGGAAGCGGTAAGTTCTTGTGAC 2022
||||||||||| ||||||||||||||
Sbjct 2118 ATCTAAGGAAGCATTAAGTTCTTGTGAC 2145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100200287820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5