BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489223
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unkno... 2091 0.0
> AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
SWITCH1 (TAIR:AT5G51330.1); Has 173 Blast hits to 168 proteins
in 34 species: Archae - 3; Bacteria - 10; Metazoa - 6; Fungi
- 2; Plants - 115; Viruses - 0; Other Eukaryotes - 37 (source:
NCBI BLink). | chr5:7957340-7960272 REVERSE LENGTH=2108
Length=2108
Score = 2091 bits (1132), Expect = 0.0
Identities = 1484/1643 (90%), Gaps = 67/1643 (4%)
Strand=Plus/Plus
Query 254 GGTGTGTTAAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 313
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GGTGTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 351
Query 314 AAACCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTAT 373
||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 352 AAAACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTAT 411
Query 374 GGCTGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGA 433
|||||||||| ||||||||||||||| |||| |||||||||||||| | | || ||||
Sbjct 412 GGCTGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCT-G-G-AG---AAGA 465
Query 434 AGAAGAAGGTAACACCTCTGGAAACAACGCCCTT-GTTGAAGTCAAGTTAGAGAAGGAAG 492
||||||||||||||||||| || |||||| |||| ||||||||||||||||||||| |||
Sbjct 466 AGAAGAAGGTAACACCTCTAGAGACAACG-CCTTGGTTGAAGTCAAGTTAGAGAAGCAAG 524
Query 493 AAGAACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAG 552
|||||||||| |||||||| || ||||||||||| ||||||||||||||| |||||||||
Sbjct 525 AAGAACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAG 584
Query 553 GAAGATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA 612
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||| | ||
Sbjct 585 CAAGATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCT-CC- 642
Query 613 GAA--ACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGC 670
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 643 GAAGCACAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGC 702
Query 671 CGAGCAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTAC 730
|||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||
Sbjct 703 AGAGCAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTAC 762
Query 731 GCGACAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 790
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GCGACAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 822
Query 791 TTGCTTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTG 850
|| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 823 TTCCTTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTG 882
Query 851 TTACAATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAA 910
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 883 TTACAATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAA 942
Query 911 ACTTGAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGAC 970
||||||||| || |||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 943 ACTTGAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGAC 1002
Query 971 TG---CATCACATGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCA 1027
|| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1003 TGCATCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCA 1062
Query 1028 AATGAAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGC 1087
|||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1063 AATGAAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGC 1122
Query 1088 AAATGAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGT 1147
|||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| ||
Sbjct 1123 AAATGAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGT 1182
Query 1148 GGAGATCTCGA-AATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGA 1206
||||||||| | |||||||||| |||||||||| |||||||||||| |||| ||||||||
Sbjct 1183 GGAGATCTC-AGAATCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGA 1241
Query 1207 AAGATAAAGTAGATCAGCAGTT-GGGGGTTATTTCAAACACGCTGAGCAATCTGCAGCCG 1265
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1242 AAGATAAAGTAGATCAGCAGTTACTGGG-AATTTCAAACACGCTGAGCAATCTGCAGCCG 1300
Query 1266 AATGGTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCC 1325
||||| |||||||||||||||||||||| |||||||||||| || |||||| || | ||
Sbjct 1301 AATGGGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCC 1360
Query 1326 AATATGGATGATTTT---AC-----G----G---AGTGGGATGACCTTATTGATGGTCTA 1370
||| |||| |||||| || | | | ||||||||||||||||||||||||
Sbjct 1361 AATTTGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTA 1420
Query 1371 CCAGAGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAA----T-------C-CT-TG 1417
|||||||||||||||||||| |||||||| ||||||||||| | | || |
Sbjct 1421 CCAGAGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTC 1480
Query 1418 CAA-A--AG-C-----TCT-T-TCCAAGACCA-TACCTTGG----T-T-GAGGAACAGTC 1459
||| | || | ||| | |||||||||| | | |||| | | | || |||||
Sbjct 1481 CAAGATCAGTCATTGATCTCTCTCCAAGACCAGT-CATTGGTCTCTCTCCAAGACCAGTC 1539
Query 1460 ATTGGTCAACATCGATATGCAAATGACAGACAGCTGCATGACTAGAGGTGAATCCAGAAG 1519
|||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1540 ATTGGTCAACGTAGATATGCAAATGACAGAAAGCAGCATGACTAGAGGTGAATCCAGAAG 1599
Query 1520 CTCCAGTCAGGACAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1579
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 CTCCAGTCAGGAAAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1659
Query 1580 AGATATTGACGACCCAACTATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACTTGGAA 1639
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1660 AGATATTGACGACCCAACAATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACATGGAA 1719
Query 1640 AGCCAAAGCGGAGCAGCAGCTAACGGAATTGTCAAACGCTGTCCTTGCTCTTAAGGGACA 1699
||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 1720 AGCCAAAGCGGAGCAGCAGCTGATGGAATTATCAAACGCTGTCCTTGCTCTTAAGGGACA 1779
Query 1700 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTCGCT 1759
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1780 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTTGCT 1839
Query 1760 TTAACCAGGCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1819
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 TTAACTAGTCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1899
Query 1820 AACTAAAC-aaaaaaaaaaCAAA 1841
|||||||| |||||||||| |||
Sbjct 1900 AACTAAACCAAAAAAAAAAAAAA 1922
Score = 1777 bits (962), Expect = 0.0
Identities = 1335/1501 (89%), Gaps = 82/1501 (5%)
Strand=Plus/Plus
Query 1 ATTGAAAAGGGGGAAGAAGGGAAGAATTTAGGGATTTTGGCGGCTTTAGGgctctctctc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTGAAAAGGGGGAAGAAGAGAAGAATTTAGGGATTTTGGCGGCTTTAGGGCTCTCTCTC 60
Query 61 agtctctct--act----t-g-c-gctgctttttccatttccctctctgctctctggcct 111
||||||||| ||| | | | ||| |||||||||||||||||||||| |||| | |
Sbjct 61 AGTCTCTCTCTACTCCCGTCGTCCGCTTCTTTTTCCATTTCCCTCTCTGCGCTCTCG--T 118
Query 112 tcgtcttgtcttcttcttcttctctatctcgattctACGGTGTCGCTCTGATCCCTAAAT 171
| | ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 119 -C-T-TTGTCTTCTTCTTCTTCTCTATCCCGATTCTACGGTGGCGCTCTGATCCCTAAAT 175
Query 172 TTCTAGGTTTTGCC-TCTTCCTGTTTCCAATTTCAATCGCGATCCGTGCTTTTT-CGATG 229
||||||||||| || | ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 176 TTCTAGGTTTTACCATTTTC-TGTTTCCAATTTCAATCGCGATCCGTGCTTTTTTCGATG 234
Query 230 -C-T-G-T---GAT------A-AAGAGTTACGCCGTCG--G-------GTGT-----G-T 260
| | | | ||| | |||||||||||||||| | |||| | |
Sbjct 235 GCGTCGATTTTGATGCTGTGAGAAGAGTTACGCCGTCGCCGCCTCTTAGTGTTCTTCGGT 294
Query 261 -T---AAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 316
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 354
Query 317 CCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTATGGC 376
||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 355 ACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTATGGC 414
Query 377 TGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGAAGA 436
||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 415 TGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCTGGAGAAGAA---GAAGA 471
Query 437 AGAAGGTAACACCTCTGGAAACAACGCCCTTG-TTGAAGTCAAGTTAGAGAAGGAAGAAG 495
|| | |||||||||| || |||||||| ||| |||||||||||||||||||| ||||||
Sbjct 472 AG--G-TAACACCTCTAGAGACAACGCC-TTGGTTGAAGTCAAGTTAGAGAAGCAAGAAG 527
Query 496 AACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAGGAA 555
||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 528 AACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAGCAA 587
Query 556 GATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA-GA 614
|||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||| | |
Sbjct 588 GATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCTCCGAAGC 647
Query 615 AACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGCCGAG 674
| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 648 A-CAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGCAGAG 706
Query 675 CAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTACGCGA 734
||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||||
Sbjct 707 CAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTACGCGA 766
Query 735 CAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTGC 794
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 767 CAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTCC 826
Query 795 TTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTGTTAC 854
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 827 TTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTGTTAC 886
Query 855 AATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAAACTT 914
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 887 AATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAAACTT 946
Query 915 GAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGACTGCA 974
||||| || |||||||| |||||||||||||||||| ||||||||| |||||||||||||
Sbjct 947 GAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGACTGCA 1006
Query 975 TCA-CA--TGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCAAATG 1031
||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1007 TCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCAAATG 1066
Query 1032 AAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGCAAAT 1091
|||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 1067 AAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGCAAAT 1126
Query 1092 GAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGTGGAG 1151
|||||||||| |||||| |||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 1127 GAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGTGGAG 1186
Query 1152 ATCTC-GAAATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGAAAGA 1210
||||| ||| |||||||| |||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1187 ATCTCAGAA-TCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGAAAGA 1245
Query 1211 TAAAGTAGATCAGCAGTTGG-GGGTTATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1269
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1246 TAAAGTAGATCAGCAGTTACTGGGA-ATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1304
Query 1270 GTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCCAATA 1329
| |||||||||||||||||||||| |||||||||||| || |||||| || | |||||
Sbjct 1305 GGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCCAATT 1364
Query 1330 TGGATGATTTTACG--GA--G-T---G------GG-ATGACCTTATTGATGGTCTACCAG 1374
|||| |||||||| || | | | || ||||||||||||||||||||||||
Sbjct 1365 TGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTACCAG 1424
Query 1375 AGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAATCCTTGCAAAAGCTCTTTCCAAG 1434
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1425 AGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTCCAAG 1484
Query 1435 A 1435
|
Sbjct 1485 A 1485
Score = 239 bits (129), Expect = 9e-62
Identities = 151/160 (94%), Gaps = 7/160 (4%)
Strand=Plus/Plus
Query 1842 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTCTGAAG 1901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1955 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTTTGAAG 2014
Query 1902 TG-AAATTTGAAGGTAGAGATGATGCTTTAAATGGTAATTGTTTTGCTGTATATTCTCTC 1960
|| |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2015 TGAAAATTTGAAGGT--AGA-GATGCTTT-AATGGTAATTGTTTTGCTGTATATTCTCTC 2070
Query 1961 TCGGATGACTCTTATTCAACAATGAAGCTTGCTTTTGAGT 2000
|||||| |||||||||||||||||||||| |||||||||
Sbjct 2071 TCGGAT--CTCTTATTCAACAATGAAGCTTACTTTTGAGT 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99095875830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5