BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489223 Length=2000 Score E Sequences producing significant alignments: (Bits) Value AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unkno... 2091 0.0 > AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SWITCH1 (TAIR:AT5G51330.1); Has 173 Blast hits to 168 proteins in 34 species: Archae - 3; Bacteria - 10; Metazoa - 6; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | chr5:7957340-7960272 REVERSE LENGTH=2108 Length=2108 Score = 2091 bits (1132), Expect = 0.0 Identities = 1484/1643 (90%), Gaps = 67/1643 (4%) Strand=Plus/Plus Query 254 GGTGTGTTAAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 313 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GGTGTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 351 Query 314 AAACCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTAT 373 ||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 352 AAAACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTAT 411 Query 374 GGCTGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGA 433 |||||||||| ||||||||||||||| |||| |||||||||||||| | | || |||| Sbjct 412 GGCTGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCT-G-G-AG---AAGA 465 Query 434 AGAAGAAGGTAACACCTCTGGAAACAACGCCCTT-GTTGAAGTCAAGTTAGAGAAGGAAG 492 ||||||||||||||||||| || |||||| |||| ||||||||||||||||||||| ||| Sbjct 466 AGAAGAAGGTAACACCTCTAGAGACAACG-CCTTGGTTGAAGTCAAGTTAGAGAAGCAAG 524 Query 493 AAGAACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAG 552 |||||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||| Sbjct 525 AAGAACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAG 584 Query 553 GAAGATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA 612 |||||||||||||||||||||| ||||||||||||| |||||| ||||||||| | || Sbjct 585 CAAGATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCT-CC- 642 Query 613 GAA--ACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGC 670 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 643 GAAGCACAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGC 702 Query 671 CGAGCAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTAC 730 |||||||| ||||||||| || |||||||||||||||||||||| |||| |||||||| Sbjct 703 AGAGCAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTAC 762 Query 731 GCGACAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 790 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 763 GCGACAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 822 Query 791 TTGCTTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTG 850 || |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 823 TTCCTTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTG 882 Query 851 TTACAATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAA 910 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 883 TTACAATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAA 942 Query 911 ACTTGAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGAC 970 ||||||||| || |||||||| |||||||||||||||||| ||||||||| ||||||||| Sbjct 943 ACTTGAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGAC 1002 Query 971 TG---CATCACATGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCA 1027 || |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1003 TGCATCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCA 1062 Query 1028 AATGAAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGC 1087 |||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||| Sbjct 1063 AATGAAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGC 1122 Query 1088 AAATGAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGT 1147 |||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| || Sbjct 1123 AAATGAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGT 1182 Query 1148 GGAGATCTCGA-AATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGA 1206 ||||||||| | |||||||||| |||||||||| |||||||||||| |||| |||||||| Sbjct 1183 GGAGATCTC-AGAATCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGA 1241 Query 1207 AAGATAAAGTAGATCAGCAGTT-GGGGGTTATTTCAAACACGCTGAGCAATCTGCAGCCG 1265 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1242 AAGATAAAGTAGATCAGCAGTTACTGGG-AATTTCAAACACGCTGAGCAATCTGCAGCCG 1300 Query 1266 AATGGTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCC 1325 ||||| |||||||||||||||||||||| |||||||||||| || |||||| || | || Sbjct 1301 AATGGGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCC 1360 Query 1326 AATATGGATGATTTT---AC-----G----G---AGTGGGATGACCTTATTGATGGTCTA 1370 ||| |||| |||||| || | | | |||||||||||||||||||||||| Sbjct 1361 AATTTGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTA 1420 Query 1371 CCAGAGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAA----T-------C-CT-TG 1417 |||||||||||||||||||| |||||||| ||||||||||| | | || | Sbjct 1421 CCAGAGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTC 1480 Query 1418 CAA-A--AG-C-----TCT-T-TCCAAGACCA-TACCTTGG----T-T-GAGGAACAGTC 1459 ||| | || | ||| | |||||||||| | | |||| | | | || ||||| Sbjct 1481 CAAGATCAGTCATTGATCTCTCTCCAAGACCAGT-CATTGGTCTCTCTCCAAGACCAGTC 1539 Query 1460 ATTGGTCAACATCGATATGCAAATGACAGACAGCTGCATGACTAGAGGTGAATCCAGAAG 1519 |||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1540 ATTGGTCAACGTAGATATGCAAATGACAGAAAGCAGCATGACTAGAGGTGAATCCAGAAG 1599 Query 1520 CTCCAGTCAGGACAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1579 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1600 CTCCAGTCAGGAAAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1659 Query 1580 AGATATTGACGACCCAACTATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACTTGGAA 1639 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1660 AGATATTGACGACCCAACAATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACATGGAA 1719 Query 1640 AGCCAAAGCGGAGCAGCAGCTAACGGAATTGTCAAACGCTGTCCTTGCTCTTAAGGGACA 1699 ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 1720 AGCCAAAGCGGAGCAGCAGCTGATGGAATTATCAAACGCTGTCCTTGCTCTTAAGGGACA 1779 Query 1700 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTCGCT 1759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1780 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTTGCT 1839 Query 1760 TTAACCAGGCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1819 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1840 TTAACTAGTCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1899 Query 1820 AACTAAAC-aaaaaaaaaaCAAA 1841 |||||||| |||||||||| ||| Sbjct 1900 AACTAAACCAAAAAAAAAAAAAA 1922 Score = 1777 bits (962), Expect = 0.0 Identities = 1335/1501 (89%), Gaps = 82/1501 (5%) Strand=Plus/Plus Query 1 ATTGAAAAGGGGGAAGAAGGGAAGAATTTAGGGATTTTGGCGGCTTTAGGgctctctctc 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTGAAAAGGGGGAAGAAGAGAAGAATTTAGGGATTTTGGCGGCTTTAGGGCTCTCTCTC 60 Query 61 agtctctct--act----t-g-c-gctgctttttccatttccctctctgctctctggcct 111 ||||||||| ||| | | | ||| |||||||||||||||||||||| |||| | | Sbjct 61 AGTCTCTCTCTACTCCCGTCGTCCGCTTCTTTTTCCATTTCCCTCTCTGCGCTCTCG--T 118 Query 112 tcgtcttgtcttcttcttcttctctatctcgattctACGGTGTCGCTCTGATCCCTAAAT 171 | | ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 119 -C-T-TTGTCTTCTTCTTCTTCTCTATCCCGATTCTACGGTGGCGCTCTGATCCCTAAAT 175 Query 172 TTCTAGGTTTTGCC-TCTTCCTGTTTCCAATTTCAATCGCGATCCGTGCTTTTT-CGATG 229 ||||||||||| || | ||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 176 TTCTAGGTTTTACCATTTTC-TGTTTCCAATTTCAATCGCGATCCGTGCTTTTTTCGATG 234 Query 230 -C-T-G-T---GAT------A-AAGAGTTACGCCGTCG--G-------GTGT-----G-T 260 | | | | ||| | |||||||||||||||| | |||| | | Sbjct 235 GCGTCGATTTTGATGCTGTGAGAAGAGTTACGCCGTCGCCGCCTCTTAGTGTTCTTCGGT 294 Query 261 -T---AAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 316 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 GTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 354 Query 317 CCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTATGGC 376 ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 355 ACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTATGGC 414 Query 377 TGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGAAGA 436 ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||| Sbjct 415 TGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCTGGAGAAGAA---GAAGA 471 Query 437 AGAAGGTAACACCTCTGGAAACAACGCCCTTG-TTGAAGTCAAGTTAGAGAAGGAAGAAG 495 || | |||||||||| || |||||||| ||| |||||||||||||||||||| |||||| Sbjct 472 AG--G-TAACACCTCTAGAGACAACGCC-TTGGTTGAAGTCAAGTTAGAGAAGCAAGAAG 527 Query 496 AACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAGGAA 555 ||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||| || Sbjct 528 AACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAGCAA 587 Query 556 GATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA-GA 614 |||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||| | | Sbjct 588 GATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCTCCGAAGC 647 Query 615 AACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGCCGAG 674 | |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 648 A-CAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGCAGAG 706 Query 675 CAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTACGCGA 734 ||||| ||||||||| || |||||||||||||||||||||| |||| |||||||||||| Sbjct 707 CAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTACGCGA 766 Query 735 CAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTGC 794 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 767 CAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTCC 826 Query 795 TTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTGTTAC 854 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 827 TTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTGTTAC 886 Query 855 AATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAAACTT 914 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 887 AATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAAACTT 946 Query 915 GAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGACTGCA 974 ||||| || |||||||| |||||||||||||||||| ||||||||| ||||||||||||| Sbjct 947 GAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGACTGCA 1006 Query 975 TCA-CA--TGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCAAATG 1031 ||| || ||||| |||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1007 TCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCAAATG 1066 Query 1032 AAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGCAAAT 1091 |||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| Sbjct 1067 AAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGCAAAT 1126 Query 1092 GAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGTGGAG 1151 |||||||||| |||||| |||| ||||||||||| |||||||||||||||||| |||||| Sbjct 1127 GAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGTGGAG 1186 Query 1152 ATCTC-GAAATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGAAAGA 1210 ||||| ||| |||||||| |||||||||| |||||||||||| |||| |||||||||||| Sbjct 1187 ATCTCAGAA-TCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGAAAGA 1245 Query 1211 TAAAGTAGATCAGCAGTTGG-GGGTTATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1269 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1246 TAAAGTAGATCAGCAGTTACTGGGA-ATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1304 Query 1270 GTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCCAATA 1329 | |||||||||||||||||||||| |||||||||||| || |||||| || | ||||| Sbjct 1305 GGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCCAATT 1364 Query 1330 TGGATGATTTTACG--GA--G-T---G------GG-ATGACCTTATTGATGGTCTACCAG 1374 |||| |||||||| || | | | || |||||||||||||||||||||||| Sbjct 1365 TGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTACCAG 1424 Query 1375 AGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAATCCTTGCAAAAGCTCTTTCCAAG 1434 |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1425 AGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTCCAAG 1484 Query 1435 A 1435 | Sbjct 1485 A 1485 Score = 239 bits (129), Expect = 9e-62 Identities = 151/160 (94%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 1842 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTCTGAAG 1901 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1955 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTTTGAAG 2014 Query 1902 TG-AAATTTGAAGGTAGAGATGATGCTTTAAATGGTAATTGTTTTGCTGTATATTCTCTC 1960 || |||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 2015 TGAAAATTTGAAGGT--AGA-GATGCTTT-AATGGTAATTGTTTTGCTGTATATTCTCTC 2070 Query 1961 TCGGATGACTCTTATTCAACAATGAAGCTTGCTTTTGAGT 2000 |||||| |||||||||||||||||||||| ||||||||| Sbjct 2071 TCGGAT--CTCTTATTCAACAATGAAGCTTACTTTTGAGT 2108 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99095875830 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5