BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489230
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase fa... 2630 0.0
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 1208 0.0
> AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase
family protein | chr5:7987540-7990547 FORWARD LENGTH=1789
Length=1789
Score = 2630 bits (1424), Expect = 0.0
Identities = 1646/1750 (94%), Gaps = 27/1750 (2%)
Strand=Plus/Plus
Query 1 CTTCTCTGCAACTCTCTCTGTTCTACTCACAATTCAGTGAAGTAAAATTTGAAAACCCAT 60
||||||||||| ||||||||||||| |||||||||| |||| |||| |||||||||||||
Sbjct 37 CTTCTCTGCAAGTCTCTCTGTTCTAGTCACAATTCACTGAATTAAAGTTTGAAAACCCAT 96
Query 61 GATGAAATGTTGAACCTTTTCAATTTCAATGGCGATTTCAAGTGTGGGTTTCGCTTGTAG 120
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 97 GATGAAATGTTGAACCTTTCCAATTTCCATGGCGATTTCAAGTGTGGGTTTTGCTTGCAG 156
Query 121 ATCCTATTT-CCCTGTTCGTACTCTCCAGTCTCACTGCTTATGGAAGGTGAACTCTTTAC 179
||||| ||| |||||||||||||||||||||||||||||||||||| | | |||
Sbjct 157 ATCCT-TTTCCCCTGTTCGTACTCTCCAGTCTCACTGCTTATGGAA---G-A-----TAC 206
Query 180 GGTTCAACACTGTTGCTGCTGCAATTGAGACAATAGATGACTCAGATTGTTTCTTCACCA 239
|||||||||||||||||||||||||||||||||| ||||| ||||| || || || |||
Sbjct 207 GGTTCAACACTGTTGCTGCTGCAATTGAGACAATGGATGAGTCAGA-TGGTT-TT-GCCA 263
Query 240 AGGACAGTGATAGTCAAGACAAGGTTGCTAATGGGA-CACGGGATCGTGAGTGGAAGCGA 298
|||||||||| |||||||||||||| || || | | || |||||||||||||||| | |
Sbjct 264 CGGACAGTGATCGTCAAGACAAGGTTTCTGAT-GAACCAAGGGATCGTGAGTGGAAACAA 322
Query 299 CTGAATTCAAAAGACCTTGGAATAAGCAGCTCAATGATTGCAAAATCCACGAGAAAAGTG 358
|||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 323 CTGAATTCGAAAGATCTTGGACTAAGCAGCTCAATGATTGCAAAATCCACAAGAAAAGTG 382
Query 359 CTTAATGGCCTTAAAAGCAAAGGACATGATGTTTACCTTGTGGGAGGCTGTGTACGGGAT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 383 CTTAATGGCCTTAAAAGCAAAGGACATGATGTTTACCTTGTGGGAGGCTGTGTACGAGAT 442
Query 419 CTTATTCTGAAGCGGACACCGAAAGACTTCGATATACTCACCTCTGCAGAACTTAGAGAG 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 443 CTTATTCTGAAGCGGACACCGAAAGACTTCGATATACTTACCTCTGCAGAACTTAGAGAG 502
Query 479 GTTGTTCGAACTTTCCCAAGATGTGAAATTGTTGGAAGAAGGTTTCCTATATGTCACGTA 538
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTGGTTCGAACTTTCCCAAGATGTGAAATTGTTGGAAGAAGGTTTCCTATATGTCACGTA 562
Query 539 CACATTGGAGATGATTTAGTAGAGGTCTCAAGTTTTAGTACCTCTGCACAGAATT-TTCC 597
|||||||||||||||||| ||||||| || ||||||||||||||||||||||||| || |
Sbjct 563 CACATTGGAGATGATTTAATAGAGGTTTCGAGTTTTAGTACCTCTGCACAGAATTCTT-C 621
Query 598 GAGAAATACGAGAACTGAATCCAAAGAATCGAGTGGCTCAGATGGTGATGAGGACTGTAT 657
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 622 GAGAAATACGAGAACTGAATGCAAAGAATCGAGTGGCTCAGATGGTGATGAGGACTGTAT 681
Query 658 CCGTTTGAATAACTGTTTGCAGCGTGATTTCACAATTAACGGGTTGATGTTTGATCCATA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CCGTTTGAATAACTGTTTGCAGCGTGATTTCACAATTAACGGGTTGATGTTTGATCCATA 741
Query 718 TGGTAAAGTCGTATATGACTATCTGGGAGGAATGGAAGATATTAGAAAAGCTAAAGTTCG 777
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 742 TGCCAAAGTCGTATATGACTATTTGGGAGGAATGGAAGATATTAGAAAAGCTAAAGTTCG 801
Query 778 AACAGTGATTCACGCTGGCACATCTTTTCAACAGGACTGTGCTCGGATTCTTCGTGCAAT 837
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 802 AACAGTGATTCACGCTGGCACATCTTTTCACCAGGACTGTGCTCGGATTCTTCGTGCAAT 861
Query 838 ACGAATTGCTGCGCGTTTAGGTTTCAGAATGTCCAAGGAAACAGCTCATTTTATTAAGAA 897
| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 862 AAGAATTGCTGCGCGTTTAGGTTTCAGAATGTCCAAAGAAACCGCTCATTTTATTAAGAA 921
Query 898 CCTTTCTTTACTAGTACAAAGACTTGACAAGGGAAGGATCTTGATGGAAATGAATTATAT 957
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 922 CCTTTCCTTACTAGTACAAAGACTTGACAAGGGAAGGATCTTGATGGAAATGAATTACAT 981
Query 958 GTTAGCTTATGGATCAGCAGAAGCTTCTTTGAGACTGCTTTGGAAATTTGGGTTACTAGA 1017
||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||| ||
Sbjct 982 GTTAGCTTATGGATCAGCAGAGGCTTCTTTGAGATTGCTGTGGAAATTTGGGATACTTGA 1041
Query 1018 AATTCTTCTACCAATTCAGGCAGCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 AATTCTTCTACCAATTCAGGCAGCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAA 1101
Query 1078 AAGGACTAACATGCTTCTGTCTCT-TTTCGCTAATTTGGATAAATTGTTAGCACCTGATA 1136
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 1102 AAGGACTAACATGCTTCTGTCTCTCTTT-GCTAACTTGGATAAATTGTTAGCACCTGATA 1160
Query 1137 GACCTTGTCACAGCAGCTTATGGATAGCAATCTTGGCATTTCACAAAGCGCTTGCTGATC 1196
| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1161 GGCCTTGTCACAGCAGCTTATGGATAGCAATCTTGGCGTTTCACAAAGCACTTGCTGATA 1220
Query 1197 AACCTCGAAGTCCTGTAGTGGTTGCTGCGTTTAGCCTTGCTGTTCACAACTGTGGAGATA 1256
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 AACCTCGAAGTCCTATAGTGGTTGCTGCGTTTAGCCTTGCTGTTCACAACTGTGGAGATA 1280
Query 1257 TTCTAGAAGCTGTGAAAATCACAAAGAAGATCACTAGGCCACACGATAAAAGCTTCTTCG 1316
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 TTCTAGAAGCTGTGGAAATCACAAAGAAGATCACTAGGCCACACGATAAAAGCTTCTTCG 1340
Query 1317 AGCTAGTAGAGCCCGAGGAGAATCTAGACTTCCAAACCCTTTTGGACGAGGTCATGGATC 1376
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1341 AGCTAGTAGAGCCCGAGGAGAATCTCGACTTCCAAACCCTGTTGGACGAGGTCATGGATC 1400
Query 1377 TTGATGCATCTATCAAAGATGCCTTAAACCAGATGACTGATGGGTATTATATATCGAAAG 1436
||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1401 TTGATGCTTCTATCGAAGATGCCTTAAACCAGATGACTGATGCGTATTTTATATCGAAAG 1460
Query 1437 CTATGTCAGCTTACCCTCAAGCACCGTATTCCGATTTGGTATTTATACCGCTGCAATTGT 1496
||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| |||
Sbjct 1461 CTATGTCAGCTTACCCTCAAGCACCATATTCCGATTTGGTCTTTATACCGTTGCAGCTGT 1520
Query 1497 ACCTTAGAGCAGGCAGGATATTCGATTGTGTGAAAAAAGACGAGACACACACACAAATGG 1556
|||||||||||||||| || ||||||||||||||||| || ||||||| | | |||
Sbjct 1521 ACCTTAGAGCAGGCAGAATCTTCGATTGTGTGAAAAACGAAGAGACACG-A-AT---TGG 1575
Query 1557 GATTTGAGGCGAAGCAAGGAAGCAAGATCGAGTATGGTTCGTTATATTCAGGAGATTTTC 1616
||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1576 -ATTTGAGGCCAAGCAAGGAAGCAAGATCGAGTATGGTTCGTTAAATTCAGGATATTTTC 1634
Query 1617 CGGAAATTCGGCATGTATTTGCGAGGGTTGTGTTCGATACTGTTTTTCCGTTAAACCTAT 1676
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1635 CCGAAATTCGGCATGTATTTGCGAGGGTTGTGTTCGATACTGTTTTTCCATTAAACCTAT 1694
Query 1677 CTCAAGAATTGTAAAAATCTCATCTTTGAGTCCTT-CAAAGCTTGGGACACAAGGTGGGG 1735
|||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 1695 CTCAAGAATTGTAAAAATCTCATCTTTGAGCCCTTTCAAAGCTTGGGACACTAGGTGGGG 1754
Query 1736 AAAGTATCCA 1745
||||||||||
Sbjct 1755 AAAGTATCCA 1764
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 1208 bits (654), Expect = 0.0
Identities = 1244/1516 (82%), Gaps = 91/1516 (6%)
Strand=Plus/Plus
Query 52 AAAA-CCCATGATGAAATGTTGAACCTTTTCAATTTCAATGGCGATTTCAAGTGTGGG-- 108
|||| |||||||||||||| |||| ||||| |||||||||||| ||| |||||||||
Sbjct 83 AAAAGCCCATGATGAAATGGTGAAACTTTTTGATTTCAATGGCGGTTTTAAGTGTGGGTT 142
Query 109 T-TTCGCTTGTAGATCCTATTTCCCTGTTCGTACTCTCCAGTCTCACTGCTTATGGAAGG 167
| |||||||| |||||| |||| ||||||| | || || || | |||| || | |||||
Sbjct 143 TCTTCGCTTGCAGATCCCATTTTCCTGTTC-T--TCCCCTGTTTTACTGTTTCTCGAAGG 199
Query 168 TGAACTCTTTACGGTTCAACACTGTTGCTGCTGCAATTGAGACAATAGATGACTCAGATT 227
| || | | |||||||||||||||||||||| ||||| | |||||| |||
Sbjct 200 T----TC---A--GCTCAACACTGTTGCTGCTGCAATGGAGACTGTGGATGACAAAGACA 250
Query 228 GT-TTCTTCACCAAGGAC-A--GTGATAGTCAAGACAAGGTTGCTAATGGGACACGGGAT 283
|| || ||| | | ||| | || || | ||||| | | ||| | |||
Sbjct 251 GTGATCATCATC-ATGACAAGGGTTCTAAT-AAGAC---G-AG-TAA--AG-CAC----- 295
Query 284 CGTGAGTGGAAGCGACTGAATTCAAAAGACCTTGGAATAAGCAGC-TCAATGATTGCAAA 342
| ||||||||| | ||||||||||||||||||| |||| || | || |||||| | ||
Sbjct 296 C-AGAGTGGAAGAAATTGAATTCAAAAGACCTTGGGATAACCA-CTTCTATGATTTC-AA 352
Query 343 ATCC-ACGA-GAAAAGTGCTTAATGGCCTTAAAAGCAAAGGACATGATGTTTACCTTGTG 400
| || || | ||| |||||| ||||||||||| || |||||| |||||||||||||||||
Sbjct 353 AGCCTAC-ACGAATAGTGCTAAATGGCCTTAAGAGTAAAGGATATGATGTTTACCTTGTG 411
Query 401 GGAGGCTGTGTACGGGATCTTATTCTGAAGCGGACACCGAAAGACTTCGATATACTCACC 460
|||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 412 GGAGGCTGTGTACGCGATCTTATTTTGAAGCGGACGCCAAAAGACTTCGATATACTCACT 471
Query 461 TCTGCAGAACTTAGAGAGGTTGTTCGAACTTTCCCAAGATGTGAAATTGTTGGAAGAAGG 520
||||| |||||||||||||||||||| | |||| ||||||||||||| |||||| ||
Sbjct 472 TCTGCGGAACTTAGAGAGGTTGTTCGGAGTTTCTCAAGATGTGAAATAATTGGAAAAAAA 531
Query 521 TTTCCTATATGTCACGTACACATTGGAGA-TGATTT-AGTAGAGGTCTCAAGTTTTAGTA 578
|||||||||||||| || |||||||| || |||| | | ||||||| || |||||||| |
Sbjct 532 TTTCCTATATGTCATGTGCACATTGG-GAATGATATGA-TAGAGGTTTCGAGTTTTAGCA 589
Query 579 CCTCTGCACAGAATTTTCCGAGAAATACGAGAACTGAATCCA-AAGAATCGAGTGGCTCA 637
||||||| || |||| || ||||| || ||||| | || || |||| | ||| ||
Sbjct 590 CCTCTGCTCAAAATTCTCTAAGAAACACAAGAACGGGTTCTGGAA-AATCTAATGGTTCC 648
Query 638 GATGGTGATGAGGACTGTATCCGTTTGAATAACTGTTTGCAGCGTGATTTCACAATTAAC 697
||| | |||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 649 TATG---ACGAGGACAGTATCCGTTTCAATAACTGCTTGCAGCGTGATTTCACAATTAAT 705
Query 698 GGGTTGATGTTTGATCCATATGGTAAAGTCGTATATGACTATCT-GGGAGGAATGGAAGA 756
|||||||||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||
Sbjct 706 GGGTTGATGTTTGATCCATATGCCAAAGTTATATATGACTATCTTGGG-GGAATAGAAGA 764
Query 757 TATTAGAAAAGCTAAAGTTCGAACAGTGATTCACGCTGGCACATCTTTTCAACAGGACTG 816
|||| ||||||||| || || |||||| |||| ||||||||||| |||||| ||||| |
Sbjct 765 CATTAAAAAAGCTAAGGTACGGACAGTGTTTCATGCTGGCACATCATTTCAAGAGGACAG 824
Query 817 TGCTC-GGATTCTTCGTGCAATACGAATTGCTGCGCGTTTAGGTTTCAGAATGTCCAAGG 875
||| | |||||||||||| || | |||||||||||||||||||||| | ||| |||||||
Sbjct 825 TGC-CAGGATTCTTCGTGGAACAAGAATTGCTGCGCGTTTAGGTTTTACAATTTCCAAGG 883
Query 876 AAACAGCTCATTTTATTAA-GAACCTTTCTTTACTAGTACAAAGACTTGACAAGGGAAGG 934
||||||||||||| |||| ||||||||| || |||||||||||||| ||| ||||||
Sbjct 884 AAACAGCTCATTTC-TTAAAGAACCTTTCCTTCCTAGTACAAAGACTCCACAGGGGAAGA 942
Query 935 ATCTTGATGGAAATGAATTATATGTTAGCTTATGGATCAGCAGAAGCTTCTTTGA-GACT 993
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||| | || |
Sbjct 943 ATCTTGTTGGAAATGAATTACATGTTAGCGTATGGATCAGCAGAAGCTTCTTT-ACGATT 1001
Query 994 GCTT-TGGAAATTTGGGTTACTAGAAATTCTTCTACCAATTCAGGCAGCATATCTTGCAC 1052
| || |||||||||||| |||||||||||||| |||||||||||||||||||||| | |
Sbjct 1002 G-TTGTGGAAATTTGGGATACTAGAAATTCTTTTACCAATTCAGGCAGCATATCTCGTTC 1060
Query 1053 GCAGTGGTTTCAGGAGACGTGACAAAAGGACTAACATGCTTCTGTCTCTTTTCGCTAATT 1112
||| |||||||| |||||| |||||||||| |||| ||||||||||||| |||| ||||
Sbjct 1061 GCACTGGTTTCAAGAGACGCGACAAAAGGAGTAACTTGCTTCTGTCTCTCTTCGGAAATT 1120
Query 1113 TGGATAAATTGTTAGCACCTGATAGACCTTGTCACAGCAGCTTATGGATAGCAATCTTGG 1172
||||||||||||| || ||||||| |||||| ||||||||||||||| || |||||||||
Sbjct 1121 TGGATAAATTGTTGGCTCCTGATAAACCTTGCCACAGCAGCTTATGGCTAACAATCTTGG 1180
Query 1173 CAT-TTCACAAAGCGCTTGCTGATCAACCTCGA-AGTCCTGT-AGTGGTTGCTGCGTTTA 1229
| | |||||||||| |||||||||||||||||| | |||| | |||||| || |||||||
Sbjct 1181 C-TCTTCACAAAGCACTTGCTGATCAACCTCGATA-TCCT-TCAGTGGTAGCCGCGTTTA 1237
Query 1230 GCCTTGCTGTTCACAACTG-TGGAGATATTCTAGAAGCTGTGAAAA-TCACAAAGAA-GA 1286
|||||||||| ||||| || ||||||| || |||||||||| |||| | || | ||| |
Sbjct 1238 GCCTTGCTGTCCACAA-TGGTGGAGATGTTTTAGAAGCTGTAAAAAAT-ACCAGGAAAG- 1294
Query 1287 TCACTAGGCCACACGATAAAAGCTTCTTCGAGCTAGTAGAGCCCGAGGAGAATCTAGACT 1346
|||| | |||||| ||| ||||||||| |||||| | ||||| ||||| ||| ||||
Sbjct 1295 TCACAAAGCCACATAATAGAAGCTTCTTTGAGCTACTGGAGCCAGAGGA-AATG--GACT 1351
Query 1347 TCCAAACCCTT-TTGGACGAGGTCATGGATCTTGATGCATCTATCAAAGATGCCTTAA-A 1404
||||||| || ||||| || ||||||||| ||||| ||||||||||||| ||||| |
Sbjct 1352 CCCAAACC-TTGTTGGATGAAGTCATGGATTTTGATTCATCTATCAAAGAAGCCTTGGGA 1410
Query 1405 CCAGATGACTGATGGGTA--TTATATATCGAAAGCTATGTCAGCTTACCCTCAAGCACCG 1462
| |||||||||||||| | || ||| || || |||||| |||| |||||||| || ||
Sbjct 1411 C-AGATGACTGATGGG-AGGTT-TATTTCCAAGGCTATGGCAGCGTACCCTCAGGCCCCA 1467
Query 1463 TATTCCGATTTGGTATTT-ATACCGCTGCAATTGTACCTTAGA-GCAGGCAGGA-TATTC 1519
||||||||| |||| ||| |||||| ||||||||||||| ||| ||| | | || |||||
Sbjct 1468 TATTCCGATATGGT-TTTCATACCGTTGCAATTGTACCT-AGATGCAAG-ACGAATATTC 1524
Query 1520 GATTGTGTGAAA-AAA 1534
|| ||||||||| |||
Sbjct 1525 GAGTGTGTGAAAGAAA 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86294736855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5