BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489231
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1814 0.0
AT3G48860.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 191 2e-47
> AT5G23700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48860.2);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7992788-7996420 FORWARD LENGTH=1785
Length=1785
Score = 1814 bits (982), Expect = 0.0
Identities = 1198/1300 (92%), Gaps = 24/1300 (2%)
Strand=Plus/Plus
Query 22 AGCCCAGTGTACGGTCGTCAATGGAGCAGATCATCTAACGTTACGGAATCGAGATCGCCG 81
||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 85 AGCCCAGTGTACGGTCGTCAATGGAGCAGATCATCCAACGGTACGGAATCTAGATCGCCG 144
Query 82 TCCAAGTCACCTGCTCACCGGAATCAAATCGGTAGTGTTGGTGGCTTATCCACCGTTAAA 141
|| | ||| || ||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 145 TCGATGTCTCCAGCTCACCGGAATCAAATCGGTGGTGTTGGTGGCTTATCAACCGTTAAA 204
Query 142 CGGACTCAGAACGTAGCCACCAAAGCGGCGGCTCAACGGTTAGCGAAGGTTATGGCTTTA 201
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 AGAACTCAAAACGTAGCCACCAAAGCGGCGGCTCAACGGTTAGCGAAGGTTATGGCTTTA 264
Query 202 CAGAACAAAGACAATGAAGAAGACGATGATGATGACGACGATCACGAATTCAAATTCGCA 261
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 265 CAGAACAAAGACAATGAAGAAGACGATGATGA---CGACGATCACGAATTCAAATTCGCA 321
Query 262 CCTCCTTCTTCTGGAGCTATCAACGGTTCCTTCTCTCGCCGCAACCGATCGCAGTCACCT 321
||||||||||||||| ||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct 322 CCTCCTTCTTCTGGACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCT 381
Query 322 GCGATAGGTAG-AA-A-CACTGAGCAAGTGACTTCAGTGCGTTCTTCGTCTACTGGAAGA 378
||||||||||| || | ||||||||||||||||||||||||||| ||||| || |||||
Sbjct 382 GCGATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAGGAAGG 441
Query 379 CCATCAACGTTTAGTAGATCCGCAACTCCGAATGCGTCTCCGATTTGGATGCCGCCTAAG 438
|||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 442 CCATCAACGTTTAGTAGATCATCAACTCCGAATGCGTCTCCCCTTTGGATGCCACCTAAG 501
Query 439 GCGTCGTTGAAACCTCCGGTGATTATTCCTCCAATTGATCAGTCATTTAAGGATAGAGAT 498
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 502 GCATCGTTGAAACCTCCGGTGATTATTCCTCCAATTGATCATTCATTTAAGGATAGAGAT 561
Query 499 CAAAGGTATTTTGGTGATGTACC--G-TTAGTAAATTCGAGAGATAAAGGGTATCAGCGC 555
||||| || |||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 562 CAAAGATACTTTGGTGATGTACCACGCTTAGTAAATTCGAGAGATAAGGGGTATCAGCGA 621
Query 556 GAAGCTGCAGCTCTTCGTGATGAAGTCGATATGCTGCAAGAGGAGAATGAGATTGTATTG 615
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 622 GAAGCTTCAGCTCTTCGTGATGAAGTGGATATGCTACAAGAGGAGAATGAGATTGTATTG 681
Query 616 GAGAAGCTTCACCGTGCAGAAGAAAACCGCGAGGCAGCAGAAGCCAGGGCTCGAGAGCTG 675
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 682 GAGAAGCTTCACCGTGCAGAAGAAATGCGTGAGGCAGCAGAAGCCAGGGCTCGAGAGCTG 741
Query 676 GAGAAACAGGTTGCTTCTCTTGGAGAAGGAGTTTCTTTGGAAGCCAAATTGTTAAGTAGG 735
|||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||
Sbjct 742 GAGAAACAGGTTGCTTCTCTTGGAGAAGGAGTGTCTCTGGAGGCTAAATTGTTAAGTAGA 801
Query 736 AAGGAAGCTGCATTGCGCCAAAGGGAGGCTGCTCTTAAGGCTGCTAACGAGAAAAAAGAT 795
|||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 802 AAGGAAGCGGCATTGCGCCAACGTGAGGCTGCTCTTAAGGCTGCTAACGAGAAAAAAGAT 861
Query 796 GGCAAAAAGGAGGAAGTTGTTTCCCTTCGTTCACAACTTCAGAGCATGAAGGATGAGGCT 855
|| ||||||||||||||||||||||| |||||| || |||||| | |||||||||||||
Sbjct 862 GGGAAAAAGGAGGAAGTTGTTTCCCTCCGTTCAGAAATTCAGATCTTGAAGGATGAGGCA 921
Query 856 GCAACAGCTGCGGAACAGC-TTCAAGAAGCAGAAGCAGAAGCAAAGGCTCTTCGTACAAT 914
| ||||||||||||| || |||||||||| ||| ||||||||||||||||||||| |||
Sbjct 922 GAAACAGCTGCGGAAT-GCCTTCAAGAAGCGGAATCAGAAGCAAAGGCTCTTCGTATAAT 980
Query 915 GACTCAAAGAATGGTTTTAACACATGACGAAATGGAGGAAGTAGCCTTGAAGAGATGCTG 974
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 981 GACTCAAAGAATGGTTTTAACACAGGACGAAATGGAGGAAGTAGCCTTGAAGAGATGCTG 1040
Query 975 GCTTGCCCGGTATTGGGGTTTGGCAGTACAGCATGGGATTTGTTCTGACATAGCATCATC 1034
||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||
Sbjct 1041 GCTTGCCCGGTATTGGGGTTTGGCAGTGCAGCATGGCATTTGTGCTGACATAGCACCATC 1100
Query 1035 AAGGCATGAAAAGTGGTCTGCTTTGGCTCCTCTTCCATTTGAGCTGGTCATATCTGCAGC 1094
||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1101 CAGGCATGAAAAATGGTCGGCTCTGGCTCCTCTTCCATTTGAGCTGGTCATATCTGCAGC 1160
Query 1095 ACAAAAGGCCAAGGA----CA-A--AA--CTGATAGATTTTTAAGTGATCTAACTGGAGA 1145
||||||| ||||||| || | || ||| ||||||||||||||||||| |||||||
Sbjct 1161 ACAAAAGACCAAGGATGATCAGAGCAAAACTGCTAGATTTTTAAGTGATCTACCTGGAGA 1220
Query 1146 AGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTAGCATCCTTAAA 1205
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1221 AGGAAATATCGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTGGCATCCTTAAA 1280
Query 1206 GGTTGAAGATGCGGTTATGCTTGCATTCGCCCAGAAGAGAACACCAAGTTTAGTTCGTCA 1265
|||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1281 GGTTGAGGATGCTGTTATGCTTGCATTCGCACAGAAGAGAACACCGAGTTTGGTTCGTCA 1340
Query 1266 AGGTATATTCCAAAGGGCATGGAGAACTCAGATTTGTAGA 1305
|| || | |||||||||||||||||||||| ||||||||
Sbjct 1341 AG--AT-T-CCAAAGGGCATGGAGAACTCAGTTTTGTAGA 1376
Score = 497 bits (269), Expect = 1e-139
Identities = 329/358 (92%), Gaps = 4/358 (1%)
Strand=Plus/Plus
Query 1319 TCAAACTTGATGAAATCCTTACCGTGCTATCACATTTCTTAAATGCAGAGCTAAAAGAAG 1378
|||||||||||||||||||||| || |||||||||||| |||||||||| |||||||||
Sbjct 1430 TCAAACTTGATGAAATCCTTACTATGTTATCACATTTCTCAAATGCAGAGATAAAAGAAG 1489
Query 1379 GGGAGCAAGAAGATGTTGCCTTTAAGCAGGCGTGGCTGATGTACTTCTGGGGTAGAGCCA 1438
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1490 GGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTTATGTACTTCTGGGGTAGAGCCA 1549
Query 1439 AGTTGCATGGTGTGGAAGAAGACATTGCAGATGAACGTATGCAGTTTTGGATCAGTCGCA 1498
|||||||| ||||||||||||||||||||||||||||| | |||||||||| |||||| |
Sbjct 1550 AGTTGCATAGTGTGGAAGAAGACATTGCAGATGAACGTTTCCAGTTTTGGACCAGTCGTA 1609
Query 1499 GTGACGGGAAAA-ATCCGACTTCTCAGGATGTTGTTGACGTGAAACGATGTTTGTTAGAG 1557
|||| |||||| ||||||||| || |||| ||||||||| ||||| |||||||||||
Sbjct 1610 GTGA-AGGAAAATCTCCGACTTCACAAGATGCCGTTGACGTGGAACGAGGTTTGTTAGAG 1668
Query 1558 CTAAGGAAACTAGGAGTAGAGCAACAATTATGGGAAGCTTGTCGCAAAGAAACCGATCAG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1669 CTAAGGAAACTAGGAGTAGAGCAACAATTATGGGAAGCTTGTCGCAAAGAAACAGATCAG 1728
Query 1618 CTTCTTCCATCCTCTTCTCCGACCTCTACTCTCTCAAATCACAAC-TTCGACTCTTAA 1674
||||||||||| ||||||||||| |||||||| |||||||||||| || |||||||||
Sbjct 1729 CTTCTTCCATCTTCTTCTCCGACATCTACTCTTTCAAATCACAACCTT-GACTCTTAA 1785
> AT3G48860.2 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: plasma membrane; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins
in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552;
Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes
- 2210 (source: NCBI BLink). | chr3:18117486-18122093 FORWARD
LENGTH=2107
Length=2107
Score = 191 bits (103), Expect = 2e-47
Identities = 217/271 (80%), Gaps = 12/271 (4%)
Strand=Plus/Plus
Query 10 AGGAGGGCTGGG-AGCCCAGTGTACGGTCGTCAATGGAGCAG-ATCATCTAAC-GTTACG 66
|||||||| ||| ||||||||||| ||||| || |||||| | |||||| ||| | ||||
Sbjct 143 AGGAGGGC-GGGTAGCCCAGTGTATGGTCGCCAGTGGAGC-GAATCATCGAACAG-TACG 199
Query 67 GAATCGAGATCGCCGTCCAAGTCACCTGCTCACCGGAATCAAATCGGTAGTGTTGGTGGC 126
|| | | ||| ||| | | ||| |||||||||||||| || ||||| || | || ||
Sbjct 200 GAGGCAACATCACCGGCGATGTCTCCTGCTCACCGGAAACAGCTCGGTGGTATCGGAGGT 259
Query 127 TTATCCACCGTTAAACGGACTCAGAACGTAGCCACCAAAGCGGCGGCTCAACGGTTAGCG 186
|| ||||||||||||||||||||||||||||| ||||||| ||||| || || |||||
Sbjct 260 TTCTCCACCGTTAAACGGACTCAGAACGTAGCTGCCAAAGCCGCGGCACAGCGATTAGCT 319
Query 187 AAGGTTATGGCTTTACAGAACAAAGACAATG-A-A-GAAGACGATGATGATGACGACGAT 243
||||| ||||| ||||||||||||||||| | | | ||||| ||||| ||||| || ||
Sbjct 320 AAGGTCATGGCCTTACAGAACAAAGACAACGGAGACGAAGATGATGAAGATGAAGATGAA 379
Query 244 CA-CGAA-T-TCAAATTCGCACCTCCTTCTT 271
| | || | ||| ||||||| || ||||||
Sbjct 380 GATCTAAGTCTCAGATTCGCATCTGCTTCTT 410
Score = 182 bits (98), Expect = 1e-44
Identities = 166/197 (84%), Gaps = 11/197 (6%)
Strand=Plus/Plus
Query 1125 TTTAAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTT 1184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TTTGAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTT 1431
Query 1185 GAGAGAGCTAGCATCCTTAAAGGTTGAAGATGCGGTTATGCTTGCATTCGCCCAGAAGAG 1244
||||||||||||||| |||||||| || ||||| ||| ||||| |||||||||| ||||
Sbjct 1432 GAGAGAGCTAGCATCATTAAAGGTGGAGGATGCTGTTGTGCTTATATTCGCCCAGCAGAG 1491
Query 1245 AACACCA-AGTTTAGTTCGTCA-AG-GTAT---ATTCCAAAGGGCATGGAGAACTC-AGA 1297
|| | ||||| ||||| || | || | | |||||||| ||||||||| || |||
Sbjct 1492 AA-AGTTGAGTTTGGTTCGCCACACTGTTTCCGACTCCAAAGGTCATGGAGAA-TCCAGA 1549
Query 1298 TTTGTAGA-GACATATG 1313
||| | || | ||||||
Sbjct 1550 TTTATCGATG-CATATG 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5