BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489232
Length=3091
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23720.1 | Symbols: PHS1 | dual specificity protein phosphat... 4883 0.0
> AT5G23720.1 | Symbols: PHS1 | dual specificity protein phosphatase
family protein | chr5:7998230-8002840 FORWARD LENGTH=3115
Length=3115
Score = 4883 bits (2644), Expect = 0.0
Identities = 2926/3064 (95%), Gaps = 12/3064 (0%)
Strand=Plus/Plus
Query 1 TTCCTCTTCTCAGATACAAAGCTGACATTTGAAGAAAAAGACATATTTCTAAAATTAAAC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 TTCCTCTTCTCAGATACAAAGCTGACATTTGAAGAAAAAGAC--ATTTCTAAAATTAAA- 60
Query 61 TCTCAG-A-CGAAGCTTTTTCAATGGCGGATCCTGAGAAGAAGCGAGATCAATCATTTTC 118
||| | | |||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 61 ---CAGAACCTAAGCTTTTGCAATGGCGGAACCTGAGAAGAAGCGAGATCAACCATTTTC 117
Query 119 TCAAGAGAAAGACGACGAGAAATATCTCTACCTTGGTCACGACGAGCACGAGTCTCCTCT 178
|||||| |||||||| |||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 118 TCAAGAAAAAGACGAAGAGAAAGATCTATACCTTGTTCACGACGAGCACGAGTCTCCTCT 177
Query 179 TCCTCTCACCGTCACTTCTCGTGTTTTGTACATGTTAGGAGACATAGCATCTGGTCCAGC 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 178 TCCTCTCACCGTCACTTCTCGTGTTTTGTACATGTTAGGAGATATAGCATCTGGTCCAGC 237
Query 239 TCATAGGTTTACTCAATGGTTGGATTTAGTTCGTAAACGAAGTGCTACTTACGGATCCTC 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTATAGGTTTACTCAATGGTTGGATTTAGTTCGTAAACGAAGTGCTACTTACGGATCCTC 297
Query 299 TGGCTTCCCTCACCGCCTTCACCGCATCGATGATATGGTTACTAGTGCAGGAGAGGGGAA 358
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 298 TGGCTTCCCTCACCGCCTTCACCGCATCGATGATATGGTCACTAGTGCAGGAGAGAGGAA 357
Query 359 TATTGATCCAAAAAGTCCACCAAGTAAGCAGAGTTCAGAAATTAGTTTGTGGGAAAGGCT 418
|| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 358 TACTGATCCTAAAAGTCCACCAAGTAGGCAGAGTTCAGAGATTAGTTTGTGGGAAAGGCT 417
Query 419 TGGTAAAGCTTCTACTGTGGATATCGAATCGAGCTGTTTTTCGTGGAATATGTTGTCTTC 478
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 418 TGGTAAAGCTTCTACTGTGGATATTGATTCGAGCTGTTTTTCATGGAATATGTTGTCTTC 477
Query 479 ACTTCATCATACTGAGCATAGTAGTAGCACTGATCATTCTGAAGAGGACCAGAGTAAACC 538
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 ACTTCATCATACTGAACATAGTAGTAGCACTGATCATTCTGAAGAAGACCAGAGTAAACC 537
Query 539 ACTTGAGGTTACTGTGAATTCTGGGGGAGTTGTTTTCTTTGCCCTGTTCAACAGTTCCAG 598
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 538 ACTTGAGGTTACTGTGAATTCTGGAGGAGTTGTTTTCTTTGCCCTGTTCAATAGTTCCAG 597
Query 599 CTCTGAAGATGCTTCTCGTAAGGAAGAAGCAGCAGTTATAAAATTTGCATCATCGAGGAT 658
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 CTCTGAAGATGCCTCTCGTAAGGAAGAAGCAGCAGTTATTAAATTTGCATCATCGAGGAT 657
Query 659 GGCCACGCAATCAGAACGTCTAGGTTATGAGTTTTCCAAGTGGCTAGGGGTTCAGATTCC 718
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 GGCCACGCAATCAGAACGTCTAGGTTATGAGTTTTCCAAGTGGCTAGGGGTGCAGATTCC 717
Query 719 GCAGGCTAGAGTAATTCATAGCTGTAATCCTGAGTGGACACTGATCAAAGAAGCCACTGA 778
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GCAGGCTAGAGTAATTCACAGCTGTAATCCTGAGTGGACACTGATCAAAGAAGCCACTGA 777
Query 779 AAAAGCACAAGCTAAAGCGACTTTGGAGGGAGACGAAGTTGGTGAAATGACATGTTCAGA 838
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 778 AAAAGCACAAGCTAAAGCGACTTCGGAGGGGGACGAGGTTGGTGAAATGACATGTTCAGA 837
Query 839 ACTTCTGGAAGCCCTTGAGCTCAGCCGTTGTCTTCTCCTAATGAGTTATGTTCATGGATG 898
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 ACTTCTGGAAGCCCTTGAGCTCAGCCGTTGTCTTCTCTTAATGAGTTATGTTCATGGATG 897
Query 899 TCCAATGCTGGAGAGCATGAGTAGTTTTGAAACTGAAGAAAAAGCAGAGAGAGCTGCTGC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCCAATGCTGGAGAGCATGAGTAGTTTTGAAACTGAAGAAAAAGCAGAGAGAGCTGCTGC 957
Query 959 AGCTCTAGGGAGAATCTTGGTGTTAGATCTAGTAATTAGGAACGAAGACAGATTACCTTG 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 958 AGCTCTAGGGAGAATCTTGGTGTTAGATCTAGTAATTAGGAATGAAGACAGATTACCGTG 1017
Query 1019 TCGTCAGCTGAGATGGCGTGGCAACCCGGCAAATCTGTTATTGACAGACAGAATTGTGTC 1078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 TCGTCAGCTGAGATGGCGTGGCAACCCGGCAAATCTGTTACTGACAGACAGAATTGTGTC 1077
Query 1079 TTCTACAAAACATCTTGAATGCTCATTTGAAGAAGCTTTTGATTCCGCCATTAAACGGTA 1138
|||| |||| |||| |||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1078 TTCTGCAAAGCATCATGAATGTTCATTTGATGAAGCTTTTGATTCCGCCATCAAACGGTA 1137
Query 1139 CCATCCAAAGGACTACAGATCCATTCAAAGGGAAAGAAGAGCTTCTTCTGTAGATAGCAG 1198
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 CCATCCAAAGGACTATAGATCCATTCAAAGGGAAAGAAGAGCTTCTTCCGTAGATAGCAG 1197
Query 1199 ATCCAGGCTGAGTATCAGTGATCAAATGTTGGTCTCACAGTCGTCTGGTTTTTCCGATAT 1258
||||||| |||||||||||||||||||||||||||||||| | |||| |||||| |||||
Sbjct 1198 ATCCAGGTTGAGTATCAGTGATCAAATGTTGGTCTCACAGGCTTCTGATTTTTCTGATAT 1257
Query 1259 AACGGAATCACCTAAATCGTATGACACTGGTTTAATGAGTCCAATGTCTGATAGATCAGT 1318
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1258 AACGGAATCACCTAGATCATATGATACTGGTTTAATGAGTCCAATGTCTGATAGATCAGT 1317
Query 1319 AGCTGCTGATTTTCACCTTGTTGCCATAGACTCGGGTGTTCCACGGCGGCCTCCTGCTGG 1378
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGCTGCCGATTTTCACCTCGTTGCCATAGACTCGGGTGTTCCACGGCGGCCTCCTGCTGG 1377
Query 1379 AAAACGGGCCAGCGACCAAGAAATTTATCCAAGATTAGTTGAGCTACTCCTCAATAGTAG 1438
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1378 AAAACGGGCAAGCGACCAAGAAATTTATCCAAGATTAGTTGAGTTACTCCTCAATAGTAG 1437
Query 1439 CCAATACTCTTCGAATTTGTTACATGAAATAACAGAAGGAAATTTAGGATATCCACAGGC 1498
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1438 CCAATATTCTTCGAATTTGTTACATGAAATAACAGAAGGAAGTTTAGGATATCCACAGGC 1497
Query 1499 AGAAGATGGTGAAGAAACATCTAATGTTCGATCTGTAGTAACACCAGTTGTACGTGAGTT 1558
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1498 AGAAGATGGTGAAGAAACATCTAATGTTCGATCTGTAGTAACACCAGTTGTACGCGAGTT 1557
Query 1559 CCGAAATGGTTTCCGTGCTGGTCTCAGGGATTTGCAAGAGTTTCACATCTTCCTTGTCAC 1618
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TCGAAATGGTTTCCGAGCTGGTCTCAGGGATTTGCAAGAGTTTCACATCTTCCTTGTCAC 1617
Query 1619 CCTTCATCAGAAATTAGATGTGTTGCTTCGGGCATTTTTTAGTATGATGGACAAAACAAT 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CCTTCATCAGAAATTAGATGTGTTGCTTCGGGCATTTTTTAGTATGATGGACAAAACAAT 1677
Query 1679 GTGTGCAGATTTTGACAGAGAAGATTTTTCTGTTCCTGAGTCACCTTCACAAACCCATGG 1738
|||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||
Sbjct 1678 GTGTGCAGATTTTGACAGAGAAGACTTTGCTGTTCCTGAGTCACCTTCACATACTCATGG 1737
Query 1739 GCATGAGGTGAATCACTATCCATCTCCCTCAAAAGATCGGGTGCATAGTGATAACAGCTC 1798
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1738 GCATGAGGTGAATCATTATCCATCTCCCTCAAAAGATCGGGTGCCTAGTGATAACAGCTC 1797
Query 1799 TGATCACAGTGAGTCAGATATGCAAAAATCAGTTCCTAGGACACCAAATTCAGAAAACAA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TGATCACAGTGAGTCAGATATGCAAAAATCAGTTCCTAGGACACCAAATTCAGAAAACAA 1857
Query 1859 AGAAGATGCGAGTTCGCCTAAGTCACGTGAAAGTTGGCATGGAAGATCCAATAAAGGTGG 1918
|||||| | | ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1858 AGAAGACGGGTCTTCGCCTAAGTCACGTGAAAGTTGGCACGGAAGATCCGGTAAAGGTGG 1917
Query 1919 AGAATCTCTTAGCAGTCAGCGTTTGGCATCAAAGCTCCGCGACTTCCATAAGTTTGCTAA 1978
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 1918 AGAATCTCTTAGCAGTCAGCGTTTGGCAGCAAAGCTCCGTGACTTCCATAAGTTTGCAAA 1977
Query 1979 GGTTGATGCTGAGTCTAATAAAGAACTAGACCAGTGGAATGAAACACTGCGGAATGAAGT 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GGTTGATGCTGAGTCTAATAAAGAACTAGACCAGTGGAATGAAACACTGCGGAATGAAGT 2037
Query 2039 TATGAAACTCTGCCAAGAAAACGGTTTTAACACTGGtttttttGAGGGCAGTGATAATAA 2098
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2038 GATGAAACTTTGCCAAGAGAACGGTTTCAACACTGGTTTTTTTGAGGGCAGTGATAATAA 2097
Query 2099 CAGTTGCACAGATGCTTACGAGCTAAAGGTTAGACTTGAGCATATTCTTGAGAGGATATC 2158
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CAGTTGCACAGATGCTTATGAGCTAAAGGTTAGACTTGAGCATATTCTTGAGAGGATATC 2157
Query 2159 ATTGATTTGCAAAGCTGCTAATACGGAGAAACCATCAATGATACAAGATAATCTTTTTAT 2218
||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2158 ATTGATTAGCAAAGCTGCTAATACAGAGAAACCATCAATGATACAAGAAAATCTTTTTAT 2217
Query 2219 CGGGGGAGGATTGGCTGCAAGGTCGATTTACACTCTTCAGCATTTAGGTATAACTCATAT 2278
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2218 CGGGGGAGGATTGGCTGCAAGGTCGATTTACACTCTTCAGCATTTAGGTATAACTCATGT 2277
Query 2279 TCTATGTTTGTGCGCTAATGAAATCGGTCAATCGGATACTCAATACCCGGATCTCTTCAA 2338
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2278 TCTATGTTTGTGCGCTAATGAAATCGGGCAATCGGATACTCAATACCCGGATCTCTTCGA 2337
Query 2339 GTACCAAAACTTCTCAATAACCGACGAAGAAGACTCAAAGATCGAGAGCATCTTTCAAGA 2398
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 2338 GTACCAAAACTTCTCAATAACCGATGATGAAGACTCAAATATCGAGAGCATCTTTCAAGA 2397
Query 2399 AGCTCTCGATTTCATCAAGCATGGCGAAGAAACAGGTGGCAAGATTTTAGTTCATTGCTT 2458
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2398 AGCTCTCGATTTCATCAAGCATGGCGAAGAAACTGGTGGCAAGATTTTAGTTCATTGCTT 2457
Query 2459 CGAAGGTCGGAGTAGAAGCGCAACAGTAGTGCTTGCTTACCTAATGCTCCAAAAGAACCT 2518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2458 CGAAGGTCGGAGTAGAAGCGCAACAGTAGTGCTTGCTTACCTAATGCTCCAAAAGAAGCT 2517
Query 2519 AACACTATTAGAAGCATGGGGCAAACTGAGGAAAGTTCATAGACGAGCTCAACCAAACGA 2578
||||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 2518 CACACTTTTAGAAGCATGGAGCAAACTGAGGAAAGTTCATAGACGAGCTCAACCGAATGA 2577
Query 2579 CGGATTTGCGCGGATCTTAATTAACCTCGACAAGAAATGTCACGGGAAAGTGTCAATGGA 2638
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2578 TGGATTTGCGCGGATCTTAATAAACCTCGACAAGAAATGTCACGGGAAAGTATCAATGGA 2637
Query 2639 GTGGAGACAGAGGAAACCGACAATGAAAGTGTGTCCGGTTTGTGGTAAGAACGCAGGTCT 2698
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2638 GTGGAGACAGAGGAAACCGACAATGAAAGTGTGTCCGGTTTGTGGAAAGAACGCAGGTCT 2697
Query 2699 AAGCAGCAGTTCTCTGAAGCTACATCTCCAGAAATCTCACAGGAAACTGTCTTCGGGAAG 2758
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2698 AAGCAGCAGTTCTTTGAAGCTTCATCTCCAGAAATCTCACAGGAAACTGTCTTCGGGAAG 2757
Query 2759 TGTTGACAGTGCAATGAACATGGAGATTCAAAAGGCTTTGGAGGCTCTTAAACTCAGCAC 2818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2758 TGTTGACAGTGCAATGAACATGGAGATTCAAAAGGCTTTGGAGGCTCTTAAACTCAGCAC 2817
Query 2819 TGGCCGTGGCTCAAGCGCTAGCTCCAATTCTTTCCAATCTCATCCTGGTTAGAGATTCCG 2878
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2818 TGGCCGTGGCTCAAGTGCTAGTTCCAATTCTTTCCAATCTCATCCTGGTTAGAGAGTCCG 2877
Query 2879 GTTTAGTTTTATCTTTGGTTTGTCCCGGTTAAAGTCTCT--AATCGAACATATaaaaaaa 2936
|||| ||||||||| |||||||||||||||||||||||| ||||| |||| | || |
Sbjct 2878 GTTTGGTTTTATCTATGGTTTGTCCCGGTTAAAGTCTCTCTAATCGTACATCTCTGAACA 2937
Query 2937 aaaaaaaaCTGATCCGTTTGGTTTTGTTTTTTACTGTAACTATCTTTGTAATTGTATACC 2996
|||| | ||||| |||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 2938 AAAACAT--TGATCTGTTTTGTTTTGTTTTTTACTGTAACGATCTTTGTACTTGTATACG 2995
Query 2997 CAACTAAATAAAAAGCCGAAAAGTTGAATACAAGTCACTGGAAAACGTCACAATAAGCTA 3056
||| ||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||
Sbjct 2996 CAAGTAAATAAAAAGCCGAAAAGCTGAATAGAAGTCACTGGGAAACGTCATAATAAGCTA 3055
Query 3057 ATGT 3060
||||
Sbjct 3056 ATGT 3059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153711513352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5