BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489237
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806... 1118 0.0
AT3G48940.1 | Symbols: | Remorin family protein | chr3:1814286... 383 2e-105
> AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806-8011619
REVERSE LENGTH=973
Length=973
Score = 1118 bits (605), Expect = 0.0
Identities = 890/1013 (88%), Gaps = 78/1013 (8%)
Strand=Plus/Plus
Query 1 AACGAGAAACAGAACATCATCACTACCAAACATTTTCCAGCTCAGTTTCTTGAACAT-AC 59
|||||||||||| | | ||||||||||||||| | |||||||||||||||| || || |
Sbjct 1 AACGAGAAACAG-A-A-CATCACTACCAAACA-TCTCCAGCTCAGTTTCTTCAA-ATAAA 55
Query 60 AGCAGTTAATCTCTCTAGAACAAtttttt-ttGTT-TC-CTCTC-----T---C------ 102
| ||||||||||||||| ||||||||||| || || || ||||| | |
Sbjct 56 AACAGTTAATCTCTCTAAAACAATTTTTTGTT-TTCTCTCTCTCTTAAATAACCAGAGAG 114
Query 103 TT-A-AAT-A-----A--C-CATTGTAACCTTTAGTTGTTGTACCTGACGTTATGGCTGA 151
|| | ||| | | | | |||||| ||||||||||||||||| || | ||||||||
Sbjct 115 TTCAGAATCATTTTGATTCTCTTTGTAATCTTTAGTTGTTGTACCTAACATCATGGCTGA 174
Query 152 AGAGGAACCAAAGAAGGTGACAGAGACCGTGTCAGAACCAACTCCAACACCGGAAGTTCC 211
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 175 AGAGGAACCGAAGAAGGTGACAGAGACCGTGTCGGAACCAACTCCAACACCGGAAGTTCC 234
Query 212 GGTTGAGAAACCTGTTGCTGCGGCAGATGTTACTCCTCAGGAGAAACCTGTTGTTGCTCC 271
||| |||||||| |||| || || || | || | |||||||||
Sbjct 235 GGTGGAGAAACC---TGCT---GC---TG------CT--GCAG--A-----TGTTGCTCC 270
Query 272 TCAGGAGAAGCCTGTGGCTCCACCTCCCGTTCTTCCATCTCCGGCGCCGGCGGAGGAGAA 331
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 271 TCAGGAGAAGCCTGTGGCTCCACCTCCCGTTCTTCCATCTCCGGCACCGGCAGAGGAGAA 330
Query 332 GCTAGAAGACTCCAAGGCTCTTGTTCCCGTTGTCGCTAAGGAAGTAGAGGAAGAGAAGAA 391
|| ||||||||| |||||| |||||||||| ||| |||| ||||||||||||||||||||
Sbjct 331 GCAAGAAGACTCTAAGGCTATTGTTCCCGTCGTCCCTAAAGAAGTAGAGGAAGAGAAGAA 390
Query 392 AGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGACAGAGAAGAGGATGTC 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGACAGAGAAGAGGATGTC 450
Query 452 ACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAACAAAGCTGAGAAGAA 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 ACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAACAAAGCTGAGAAGAA 510
Query 512 GCTTTCTTCAATTGGGTCATGGGAGAACAACAAGAAAGCAGCTGTGGAAGCTGAGCTCAA 571
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GCTTTCTTCAATTGGATCATGGGAGAACAACAAGAAAGCAGCTGTGGAAGCTGAGCTCAA 570
Query 572 GAAAATGGAGGAGCATTTGGAGAAGAAGAAGGCAGAGTATGTGGAGCTGATGAAGAACAA 631
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 571 GAAAATGGAGGAGCAATTGGAGAAGAAGAAGGCAGAGTATGTGGAGCAGATGAAGAACAA 630
Query 632 AATAGCTCAAATTCACAAGGAAGCTGAAGAAAAGAGAGCGATGATCGAAGCTAAGCGTGG 691
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 631 AATAGCTCAAATTCACAAGGAAGCAGAAGAGAAGAGAGCGATGATTGAAGCTAAGCGTGG 690
Query 692 AGAAGAAGTTCTCAAAGCCGAGGAATTAGCTGCCAAGTACCGTGCCACTGGAACCGCTCC 751
||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 691 AGAAGAAATTCTCAAAGCAGAGGAATTAGCAGCCAAGTACCGTGCCACTGGAACCGCTCC 750
Query 752 CAAAAAGCTTTTTGGATGCATATGATCT--AATCATCTCGAATGGG-AAACACATGAA-T 807
|||||||||||| |||||||| |||||| ||||||||||| |||| ||||| ||||| |
Sbjct 751 CAAAAAGCTTTTCGGATGCATGTGATCTCTAATCATCTCGA-TGGGGAAACAAATGAAAT 809
Query 808 ATGGTGTT-GATGTAATGACGTT-TTTAGTTTGCTAAATATGGGTTTAATTTGGCAACAT 865
||||| || |||||||||||||| ||||||||||| ||| |||||||||| |||||||||
Sbjct 810 ATGGTATTTGATGTAATGACGTTCTTTAGTTTGCTTAATGTGGGTTTAATATGGCAACAT 869
Query 866 AGAATA-TTATAAGGTCATATGCAAACATTACATATTGATTGGGATGCGTTTGTTTATTT 924
|||| | ||||||||||| | || | ||| ||||||||||| |||||||||| ||||
Sbjct 870 AGAA-AGTTATAAGGTCA-A--CAT-C-TTA--TATTGATTGGGCTGCGTTTGTTAATTT 921
Query 925 AATATTGTATTTGTACAACTCTTTTCATTGAAAGtttttttCTTAGCTTTATG 977
|| ||||||||||||| ||||||||||||||| ||| |||||||||||||
Sbjct 922 GAT-TTGTATTTGTACA--TCTTTTCATTGAAAGGCTTTCTCTTAGCTTTATG 971
> AT3G48940.1 | Symbols: | Remorin family protein | chr3:18142863-18144163
REVERSE LENGTH=528
Length=528
Score = 383 bits (207), Expect = 2e-105
Identities = 375/455 (82%), Gaps = 15/455 (3%)
Strand=Plus/Plus
Query 323 GGAGGAGAAGCT-AGAAGACTCCAAGGCTCTTGTTCCCGTTGTCGCT---AAGGAA-GTA 377
|||||||||| | || || || || ||| |||||| ||| |||||| || ||| ||
Sbjct 72 GGAGGAGAAG-TCCGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCTA 130
Query 378 GAGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGAC- 436
|||||| ||||||| ||| |||||| | |||||||||||| ||| |||| | ||| |
Sbjct 131 -CGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTCGAG-CA 188
Query 437 AGAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAA 496
||| |||||||| || || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 189 AGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAA 248
Query 497 CAAAGCTGAGAAGAAGCTTTCTTCAATTGG-GTCATGGGAGAACAACAAGAAAGCAGCTG 555
||||||| |||||||| |||||||| |||| | | ||||| |||| ||||||||| |||
Sbjct 249 CAAAGCTCAGAAGAAGATTTCTTCAGTTGGAG-CTTGGGAAAACAGCAAGAAAGCTTCTG 307
Query 556 TGGAAGCTGAGCTCAAGAAA-ATGGAGGAGCATTTGGAGAAGAAGAAGGCAGAGTATGTG 614
||||||||||||| || ||| || |||||||| | | |||||||| ||| | ||
Sbjct 308 TGGAAGCTGAGCTAAA-AAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACACTACACA 366
Query 615 GAGCTGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCTGAAGAAAAGAGAGCGATG 674
|||| ||||||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct 367 GAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAGAGCGATG 426
Query 675 ATCGAAGCTAAGCGTGGAGAAGAAGTTCTCAAAGCCGAGGAATTAGCTGCCAAGTACCGT 734
| ||||||||| || |||||||| |||||||||||||| ||| | ||||| |||||||||
Sbjct 427 ACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACCGT 486
Query 735 GCCACTGGAACCGCTCCCAAA-AAGCTTTTTGGAT 768
||||| ||||| ||||| || ||||| |||||||
Sbjct 487 GCCACCGGAACTGCTCC-AACCAAGCTATTTGGAT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47822907944
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5