BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489244
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23810.1 | Symbols: AAP7 | amino acid permease 7 | chr5:8028... 2170 0.0
> AT5G23810.1 | Symbols: AAP7 | amino acid permease 7 | chr5:8028378-8030816
FORWARD LENGTH=1573
Length=1573
Score = 2170 bits (1175), Expect = 0.0
Identities = 1341/1422 (94%), Gaps = 8/1422 (1%)
Strand=Plus/Plus
Query 1 AAAAAATGGACATTAAAGAAAATGACGAGTCTCGAGTTATAACACCAACCGAACTTCAAC 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 79 AAAAAATGGACATTAAAGAAGATGACGAGTCTCGAGTTATAACACCAACCGAGCTTCAAC 138
Query 61 CTCATGATTCAGTTTCTGCAAGAACAGGAACGTTATGGACGGCGGTGACACATATAATAA 120
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 139 TTCATGATTCAGTTACTGCAAGAACAGGAACGTTATGGACGGCGGTGGCACATATAATAA 198
Query 121 CAGGAGTGATAGGAGCTGGAGTGTTGTCGTTGGCTTGGGCCACGGCGAAGCTCGGCTGGA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 199 CAGGAGTGATAGGAGCTGGAGTGTTGTCGTTGGCTTGGGCCACGGCGGAGCTCGGCTGGA 258
Query 181 TCGCTGGTCCAGCCGCTCTTATAGCCTTCGCCGGAGTTACACTTCTCTCTGCTTTTCTTC 240
|||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 259 TCGCTGGTCCGGCCGCCCTTATAGCCTTCGCCGGGGTCACACTTCTCTCTGCTTTTCTTC 318
Query 241 TTTCGGATTGCTACCGTTTCCCTGATCCTGACAACGGTCCCCTCCGACTTAATTCTTACT 300
|||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 319 TTTCCGATTGCTACCGTTTCCCTGATCCTAACAACGGTCCCCTCCGACTCAATTCTTACT 378
Query 301 CTCAAGCCGTTAAATTGTATTTAGGGAAGAAGAATGAGATCGTATGTGGGGTCGTTGTAT 360
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 379 CTCAAGCCGTTAAATTGTATTTAGGGAAGAAGAATGAAATTGTATGTGGAGTCGTTGTAT 438
Query 361 ACATTTCCCTTTTTGGTTGTGGTATTGCTTATACCATAGTTACAGCGACATGCATTAGAG 420
|||||||||||||||||||||| |||||||||||||| |||| ||| ||||||| |||||
Sbjct 439 ACATTTCCCTTTTTGGTTGTGGCATTGCTTATACCATTGTTATAGCTACATGCAGTAGAG 498
Query 421 CAATTATGAAATCGAATTGTTATCATAGAGAA-GGACACAATGCAACATGTTCTTTTGGA 479
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||
Sbjct 499 CAATTATGAAATCGAATTGTTATCATAGA-AATGGACACAATGCAACATGTTCATATGGA 557
Query 480 GACAACAACAACTACTTCATGCTTTTGTTTGGTTTGACTCAGATCTTTATGTCACAAATA 539
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 558 GACAACAACAACTACTTCATGGTTTTGTTTGGTTTGACTCAGATATTTATGTCACAAATA 617
Query 540 CCTAATTTCCACAACATGCTATGGCTCTCTCTTGTTGCCGCGATTATGTCCTTTACTTAC 599
|||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct 618 CCTAATTTCCACAACATGGTATGGCTCTCTCTTGTCGCCGCTATTATGTCTTTTACTTAC 677
Query 600 TCATTCATTGGCATGGGCCTCGCCCTTGGCAAAATCATAGAGAATCGAAAAATTGAGGGA 659
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TCGTTCATTGGCATCGGCCTCGCCCTTGGCAAAATCATAGAGAATCGAAAAATTGAGGGA 737
Query 660 AGTGTAAGGGGAAGT-CCAGCAGAAAACAGAGGTGCAAAA-GTATGGTTAGTGTTCCAAG 717
||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 738 AGTATAAGGGGAA-TACCAGCAGAAAACAGAGGTG-AAAAGGTATGGATAGTGTTCCAAG 795
Query 718 CTCTTGGGAACATTGCCTTTTCATATCCTTTCTCAATCATACTTCTTGAGATTCAGGACA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CTCTTGGGAACATTGCCTTTTCATATCCTTTCTCAATCATACTTCTTGAGATTCAGGACA 855
Query 778 CATTGAGATCACCACCAGCAGAGAAGGAAACGATGAAGAAAGCCTCAACGGTTGCGGTAT 837
|||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 856 CATTGAGATCACCACCGGCAGAGAAGCAAACGATGAAGAAAGCCTCGACGGTTGCGGTAT 915
Query 838 TCATCCAAACATTCTTCTTCTTCTGTTGCGGATGTTTTGGGTACGCTGCCTTTGGAGATT 897
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 916 TCATCCAAACATTCTTCTTCTTCTGTTGTGGATGTTTTGGGTACGCGGCCTTTGGAGATT 975
Query 898 CCACCCCGGGGAATCTCTTGACCGGTCCCGGCTTCTATGAGCCATTCTGGCTCGTCGATT 957
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 976 CCACCCCGGGAAATCTCTTGACCGGTTTCGGCTTCTATGAGCCATTCTGGCTCGTCGATT 1035
Query 958 TCGCTAACGCTTGCATTGTTCTTCATTTAGTTGGTGGATATCAGGTATACAGTCAACCGA 1017
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1036 TCGCCAACGCTTGCATTGTTCTTCATTTAGTTGGTGGATATCAGGTATACAGTCAACCAA 1095
Query 1018 TCTTCGCGGCTGTGGAGAGATGGTTAACTAAGAAATACCCACAAAACAAGTTCATTGCCA 1077
| |||||||||| |||||||| | |||| |||||||| || |||| ||||| || ||||
Sbjct 1096 TTTTCGCGGCTGCGGAGAGATCGCTAACCAAGAAATATCCGGAAAATAAGTTTATCGCCA 1155
Query 1078 GATTCTACGGATTCAAACTGCCATTGTTACGAGGAG-GAACGGTGAGATTGAATCCAATG 1136
|||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||||||
Sbjct 1156 GATTCTACGGATTCAAACTGCCATTGTTGCGAGGAGAGA-CGGTGAGATTGAACCCAATG 1214
Query 1137 AGGATGTGTCTAAGAACGATGTATGTGTTGATCACAACGGGAGTGGCAGTGATGTTTCCC 1196
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1215 AGGATGTGTTTGAGAACGATGTACGTGTTGATCACAACGGGAGTGGCAGTGATGTTTCCC 1274
Query 1197 TACTTCAATGAAGTTTTAGGAGTATTGGGGGCAATTGGATTTTGGCCTTTGGCAGTGTAT 1256
|||||||||||||| |||||||| |||||||| ||| |||||||||| |||||||||||
Sbjct 1275 TACTTCAATGAAGTATTAGGAGTGGTGGGGGCACTTGCATTTTGGCCTCTGGCAGTGTAT 1334
Query 1257 TTTCCTGTGGAGATGTGTATATTGCAGAAGAAGATCCCAAGTTGGACGCGACCATGGCTT 1316
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1335 TTTCCTGTGGAGATGTGTATATTGCAGAAGAAAATCCGAAGTTGGACGCGACCATGGCTT 1394
Query 1317 CTTCTTAGAGGTTTTAGCTTTGTTTGCTTGCTCGTCTGTCTATTGTCTCTTGTAGGATCT 1376
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1395 CTTCTTAGAGGTTTCAGCTTTGTGTGCTTGCTCGTCTGTCTCTTGTCTCTTGTTGGATCT 1454
Query 1377 ATTTATGGACTTGTCGGAGCAAAATTCGGATGATTAGCCAAT 1418
|||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1455 ATTTATGGACTTGTTGGAGCTAAATTCGGATGATTAGCCAAT 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69879158640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5