BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489250
Length=3047
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23890.1 | Symbols: | LOCATED IN: mitochondrion, chloroplas... 4761 0.0
> AT5G23890.1 | Symbols: | LOCATED IN: mitochondrion, chloroplast
thylakoid membrane, chloroplast, plastid, chloroplast envelope;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology
domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G52410.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8058689-8063201
FORWARD LENGTH=3137
Length=3137
Score = 4761 bits (2578), Expect = 0.0
Identities = 2904/3060 (95%), Gaps = 27/3060 (1%)
Strand=Plus/Plus
Query 1 CTCTCTACAAACAAACCATGGCTTCTGCGACCGCCACGTGGACACCTTCCTCTCTCCAGC 60
|||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 84 CTCTCTACAATCAAACCATGGCTTCTGCGACCGCCACGTGGACACCTACCTCCCTCCAGC 143
Query 61 TCCGTCTCGCTTTGAGCTCCGGCGTTCGCCGGAATTCACGCGCCGTTTACTTACGACCAT 120
| ||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||
Sbjct 144 TTCGTCTCGCTTTGAGCTCCGGCGTGCGTCGGAAATCTCCCGCCGTTTACTTACGACCAT 203
Query 121 CGCGATTAGCTAGGAAATCCGGTTATGGAATTGTCTGTGTTTCGCAGAAGCCTGAAGTTG 180
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CGCGATTGGCTAGGAAATCGGGTTATGGAATTGTCTGTGTTTCGCAGAAGCCTGAAGTTG 263
Query 181 ATGCGTGGACTGGATCGGATTCGTCAAAGTCGTCGGCGGATAATTTAGCTGGGTGGGATG 240
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 264 ATGCGTGGACCGGATCGGATTCGTCAAAGTCGTCGGCTGATAATTTGGCTGGGTGGGATG 323
Query 241 ATTCCGATAACGATGATAAGAAGTCTTCTAGAGCTAAGAATAAGAGTTTGAGTGAAGGTG 300
|||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||||||||
Sbjct 324 ATTCCGATAACGATGACAAGAAGTCTTCCAGAGTTAAGAAGAAGAGTTTGATTGAAGGTG 383
Query 301 TAGTTGGTGCTGGAGTGGCTGGAATCATTTTGTTTCTTGGGCTAAGCTATGCAGCAGCTT 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 384 TAGTTGGGGCTGGAGTGGCTGGAATCATTTTGTTTCTTGGGCTAAGCTATGCAGCAGCAT 443
Query 361 CTTTTAGCAAGCGAACaaaaaaaCAGGAAATGCATTCGTTGACTTCTCAGCAGGAAAGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CTTTTAGCAAGCGAACAAAAAAACAGGAAATGCATTCGTTGACTTCTCAGCAGGAAAGCA 503
Query 421 TGGTTCAGTTATCTGACGAAACTTCTAGTGATGAGATCAAGGTAGCTAACAGTGAGGAAA 480
|| |||| | |||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 504 TGATTCAATCATCTGATGAAATTTCTAGTGATGAGATTAAGGTAGCTAACAGTGAGGAAA 563
Query 481 ACAATCTTAAGGACGAGGATAAGAGGATAGAAAGCAATGATGTAGCTCAGAAAAGTGATG 540
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 564 GCAATCTTAAGGACGAGGATAAGAGTATAGAAAGCAATGATGTAGCTCAGAAAAGTGATG 623
Query 541 AAGGGTCTGGTGAAGATAAACTACTTGGTAACGAGACGTTGTCAGTTGATGGTGTCATG- 599
|||||||||| |||||||||||||||||||| ||||| | |||| ||||||||||||||
Sbjct 624 AAGGGTCTGGCGAAGATAAACTACTTGGTAAGGAGACATCGTCATTTGATGGTGTCATGA 683
Query 600 CTTGATGAAGCGGATGCCACTGAAAGTATCCCCCAGAATACGCCTGAAGCAGATTTGATA 659
| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 684 C-TGATGAAGCGGATGCCACTGAAAGTATCCCCCAAAATACTCCTGAAGCAGATTTGATG 742
Query 660 ATCAGTGTGGAAACTGATCCTGAGACAGCAGAAAGTGAGAAAATAATTTCTGAATCTAAG 719
||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 743 GTCAATGCGGAAACTGATCCTGAGACAGCAGAAAGTGAGAAAATAATATCTGAATCTAAG 802
Query 720 TCTCTGTTAGACTCATCCACTGAGCCTATTCTTCTAGATGCAGAAAGTAGTAATCTTGTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TCTCTGTTAGACTCATCCACTGAGCCTATTCTTCTAGATGCAGAAAGTAGTAATCTTGTG 862
Query 780 GGCGTGGAAAATACAAATTCTGAAGATCCAGAGAGTCTCCCGAACACTGAACCAACCAAT 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 863 GGCGTGGAAAATACAAATTCTGAAGATCCAGAGAGTCTCCTGAACACTGAACCAACCAAT 922
Query 840 GTGTCTGATTTAGAAAATCGTGTTAACAGTCAGAAGGAAGATTCCCTATCTTCTTTATCT 899
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 923 GTGTCTGATTTAGAAAATCATGTTAACAGTCAGAAGGAAGATTCCTTATCTTCTTTATCA 982
Query 900 GGCATTGATGCGTATGCAGCCTCCGGGACTGTAACTGAGGAGCTTCCTGAGGTTTCTTCA 959
||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 983 GGCATCGATGCTTATGCAGCCTCGGGGACTGTAACT---GAGCTTCCTGAGGTTTCTTCA 1039
Query 960 CAATCGGATTCGACTTCGAATCCTCAAATTGTGCCACTAAATGACACGGAAACAGCATTC 1019
|||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1040 CAATTGGATTCGACTTCAAAACCTCAGATTGTGCCACTAAATGACACGGAAACAGCATT- 1098
Query 1020 T-CGACTGGTGAAGAGCTTTCTGAGGTTAACGGAACACCGGAGTACTT-G--GCCGCAGG 1075
| | |||| ||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 1099 TGCCACTGCTGAAGAGCTTTCTGAGGTTAACGGAACACCGGAGTACTTCGAAACCTCA-G 1157
Query 1076 AAGTAT-GTCATCAATATCGGACATAGATACAACCAAAGAAAC-TGAATCTTCAAAATCT 1133
| | | |||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 1158 -A-T-TGGTCATCAATATCAGACATAGATACAACGAAAG-AACTTGAATCTTCAAAATCT 1213
Query 1134 CCTGAGCCAGAATCAATAGATGGGTCAAAAGATGAACTAGACATATATAGTCAAGATGAG 1193
|||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1214 CCTGTGCCAGAATCAACAGATGGGTCAAAAGATGAACTAAACATATATAGTCAAGATGAG 1273
Query 1194 CTTGACGACAATGGAAAACTTTTGGAAATACCGAGTGGTGGAAGTGCATTTTCTTCTGCA 1253
||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1274 CTTGACGACAACAGAATGCTTTTGGAAATACCCAGTGGTGGAAGTGCATTTTCTTCTGCT 1333
Query 1254 GGAATTCCTGCACCTTTTATGTCTGTTCTAGTTAATCCTGGAAAGATTCTTGTCCCCGCA 1313
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct 1334 GGAATTCCTGCACCTTTTATGTCTGTTATAGTTAATCCTGGGAAGATTCTTGTCCCCGTA 1393
Query 1314 GCTGCGGATCAGGTTCAGTGTCAAGCATTTGCAGCTCTGCAAGTTCTGAAGGTCATTGAA 1373
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GCTGCGGATCAGATCCAGTGTCAAGCATTTGCAGCTCTGCAAGTTCTGAAGGTCATTGAA 1453
Query 1374 ACTGACACCCAACCCAGTGATCTATGCACTCGCAGAGAATATGCCAGGTGGCTGGTTTCT 1433
||||| || ||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1454 ACTGATACACAACCTAGTGATCTATGTACTCGCAGAGAATATGCCAGGTGGCTGATTTCT 1513
Query 1434 GCCAGCAGCGCGTTATCAAGAAACACAACCTCAAAAGTGTATCCTGCTATGTATATAGAG 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1514 GCCAGCAGCGCGTTATCAAGAAACACAACCTCAAAAGTGTATCCTGCTATGTATATTGAG 1573
Query 1494 AATGTTACTGAGCTTGCTTTCGATGATATTACTCCTGAAGACCCTGATTTTTCTTCCATT 1553
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1574 AATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATT 1633
Query 1554 CAAGGGTTGGCAGAAGCAGGACTTATTGCGAGCAAGCTTTCTAACCGTGATTTGCTTGAC 1613
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1634 CAAGGGTTGGCAGAAGCAGGACTTATCGCGAGCAAGCTTTCTAACCGTGATTTACTTGAC 1693
Query 1614 GATGTTGAGAGCACATTCTTATTTTCCCCTGAAAGCCTTCTTTCACGTCAGGATCTTATA 1673
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1694 GATGTTGAGGGCACATTCTTATTTTCCCCTGAAAGCCTTCTTTCACGCCAGGATCTGATA 1753
Query 1674 AGCTGGAAAATGGCCTTGGAGAAACGACAGCTTCCAGAAGCTGATAAAAAGATGCTGTAT 1733
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1754 AGCTGGAAAATGGCCTTGGAGAAACGACAACTTCCAGAAGCTGATAAAAAGATGCTGTAT 1813
Query 1734 AAACTCTCGGGTTTCATTGACATCGATAAGATAAACCCAGATGCATGGCCTGCCATCATC 1793
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1814 AAACTCTCGGGCTTCATTGACATCGATAAGATAAACCCAGATGCATGGCCTTCCATCATT 1873
Query 1794 GCAGATTTATCTACTGGGGAACAAGGAATTGCTGCTCTTGCATTTGGTTGTACAAGATTG 1853
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1874 GCAGATTTATCTACTGGGGAACAAGGAATCGCTGCCCTTGCATTTGGTTGTACAAGATTG 1933
Query 1854 TTTCAGCCTCATAAACCAGTCACTAAAGGGCAAGCTGCCATTGCTCTTTCAAGTGGTGAG 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 TTTCAGCCTCATAAACCAGTCACTAAAGGGCAAGCTGCCATTGCTCTTTCAAGTGGTGAG 1993
Query 1914 GCATCTGACATTGTCAGTGAGGAATTGGCACGTATCGAAGCAGAATCCATGGCTGAAAAA 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 GCATCTGACATTGTCAGTGAGGAATTGGCACGTATCGAAGCAGAATCCATGGCTGAAAAA 2053
Query 1974 GCTGTGTCTGCGCATAACGCCCTCGTTGCAGAGGTCGAAAAGGATGTCAATGCCAGCTTT 2033
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2054 GCTGTGTCTGCGCATAACGCCCTCGTTGCAGAGGTCGAAAAGGATGTCAATGCCAG-TTT 2112
Query 2034 -GAGAAGGAGCTTTCCATGGAACGAGAAAAGATTGAAGCAGTCGAGAAAATGGCGGAACT 2092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 CGAGAAGGAGCTTTCCATGGAACGAGAAAAGATTGAAGCAGTCGAGAAAATGGCGGAACT 2172
Query 2093 GGCGAAAGTGGAGTTGGAGCAGCTTAGGGAGAAGAGAGAGGAAGAGAATCTGGCGTTGGT 2152
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2173 GGCGAAAGTGGAGTTGGAGCAGCTGAGGGAGAAGAGAGAGGAAGAGAATCTGGCGTTGGT 2232
Query 2153 GAAAGAACGAGCTGCGGTTGAGTCAGAAATGGAGGTACTCTCACGGTTAAGACGTGATGC 2212
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2233 TAAAGAACGAGCTGCGGTTGAGTCAGAAATGGAGGTCCTCTCACGGTTAAGACGTGATGC 2292
Query 2213 GGAAGAGAAGCTGGAGGATTTGATGAGTAACAAGGCAGAAATATCCTTTGAGAAAGAGAG 2272
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 2293 GGAAGAGAAGCTGGAGGATTTGATGAGTAACAAGGCAGAGATAACCTTTGAGAAAGAGAG 2352
Query 2273 GGTTTTCAACCTTCGAAAAGAGGCTGAAGAAGAGAGCCAGCGGATTTCAAAGTTGCAGTA 2332
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2353 GGTTTTCAATCTTCGAAAAGAGGCTGAAGAAGAGAGCCAGCGGATTTCAAAGTTGCAGTA 2412
Query 2333 CGAATTGGAAGTTGAACGAAAAGCCTTGTCCATGGCCAGATCATGGGCCGAGGAGGAAGC 2392
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2413 TGAATTGGAAGTTGAACGAAAAGCCTTGTCCATGGCCAGATCGTGGGCCGAGGAGGAAGC 2472
Query 2393 AAAGAGAGCTAGAGAACAAGGAAGAGCCTTAGAAGATGCTAGGAAGCGATGGGAAACAAA 2452
||||| ||||||||||||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct 2473 AAAGAAAGCTAGAGAACAAGGGAGGGCCTTAGAAGAAGCTAGAAAGCGATGGGAAACAAA 2532
Query 2453 TGGACTGAGAGTTGTTGTTGACAAAGACCTTCAAGAGACGATCAGCGGAGAGACAGAACA 2512
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2533 TGGACTGAGAGTTGTTGTTGACAAAGACCTTCAAGAGACGAGCAGCAGAGAGACAGAACA 2592
Query 2513 AAGCGTATTACTAAACGATG-TGGAGAGATCCTCAGTTGAAGAAACCGAGGAG-AGAGCC 2570
|||| || |||||||||| | ||||||||||||||||||||||||| ||| || ||||||
Sbjct 2593 AAGCATAGTACTAAACGA-GATGGAGAGATCCTCAGTTGAAGAAACTGAG-AGGAGAGCC 2650
Query 2571 AAAACCCTGATGGATAAGCTTAAGGAGATGGCTGGAACCGTGAGTGGAAAATTCCGGGAG 2630
|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 2651 AAAACCCTGATGGATAAGCTGAAGGAGATGGCTGGAACCGTGAGTGGAAAGTCCCGGGAA 2710
Query 2631 GTGATCTTCATTGTGATGGAGAAAATACGTTTATGGATTACAATTTTGAAGGAATACGCA 2690
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 2711 GTGATCTTCACTGTGATGGAGAAAATACGTTTATGGATTACAGTTTTGAAGGAATATGCA 2770
Query 2691 GTGAATTTAGGGAAGCGAGCCGGGGAAATGAGAGATGCGGCCATTGTTAAGGCGAAAGTA 2750
|||||||||||||||||||| ||||||||||||||||| |||||||| | ||| |||| |
Sbjct 2771 GTGAATTTAGGGAAGCGAGCTGGGGAAATGAGAGATGCAGCCATTGTGAGGGCAAAAGGA 2830
Query 2751 GCCGC-GACAGAGGTTGAGAAAGGGACAGTTCAGGTGAGCGATAAGGTGAAGAAAATGGC 2809
|| || | |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2831 GCAGCAG-CAGATGTTGAGCAAGGGACAGTTCAGGTGAGCGATAAGGTGAAGAAAATGGC 2889
Query 2810 TGAGGAGTGTAGAGATGGAGTTGGGAAGATCTCTCAGAGGTTCAAGACCTAAAGTAACAG 2869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2890 TGAGGAGTGTAGAGATGGAGTTGGGAAGATCTCTCAGAGGTTCAAGACCTAAAGTAACAG 2949
Query 2870 TCTTTTAACTTTTT-GTATCTTGTTTCTAAATGATAAAAATAAAAGAGAATAATGGGATG 2928
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2950 TCTTTTAACTTTTTTGTATCTTGTTTCTACATGATAAAAATAAAAGAGAATAATGGGATG 3009
Query 2929 GCCATTACATTTACAGTATTGGTCAGTGTTGATCAGAATTCATAATTGTATCATTTTGTA 2988
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 3010 GCCATTACATTTACAGTATTGGTCAGTGATGTTCAGAATTCATAATTGTATCATTTTGTA 3069
Query 2989 ATCTTTGTTATGTGGTT-ACTAATACTTACACTTCAGTGCGATATGTTATAATTGCCTTG 3047
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 3070 ATCTTTGTTATGTGGTTTACTAATACTTACACTTTAGTGCGATATGTTATAATTGCCTTG 3129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151504167860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5