BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489251
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23900.1 | Symbols: | Ribosomal protein L13e family protein... 1099 0.0
AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conser... 577 6e-164
AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein... 512 2e-144
> AT5G23900.1 | Symbols: | Ribosomal protein L13e family protein
| chr5:8063985-8065523 REVERSE LENGTH=856
Length=856
Score = 1099 bits (595), Expect = 0.0
Identities = 735/799 (92%), Gaps = 23/799 (3%)
Strand=Plus/Plus
Query 1 AAAATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCATTGGCAGAATTAT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 42 AAAATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTAT 101
Query 61 GTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGAAG 120
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 102 GTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGCTAGACAGAAG 161
Query 121 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 221
Query 181 CAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CAGACACTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 281
Query 241 AAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACCGT 300
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 282 AAGGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGA 341
Query 301 CGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACAAG 360
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 342 CGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAAGGTTAAAGACTTACAAG 401
Query 361 GCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAAAGTCAAGGCTGGTGATTCTACTCCA 420
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 402 GCTAAGTTGGTGGTGTTCCCTCGCCGTTCCCGTCAAGTCAAGGCTGGTGATTCTACTCCA 461
Query 421 GAGGAGCTTGCTAATGCTACCCAAGTCCAAGGTGATTACATGCCTATTGCTAGTGAGAAG 480
||||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||| |||
Sbjct 462 GAGGAGCTTGCCAATGCTACTCAAGTTCAAGGTGATTACATGCCAATTGCCAGTGTCAAG 521
Query 481 GCAGCCATGGAGCTTGTGAAGCTTACTGCGGATATGAAGGCGTTCAAGGCCTATGATAAG 540
||||| |||||||| || ||||| ||||| ||| |||||||||||||||| || ||||||
Sbjct 522 GCAGCTATGGAGCTAGTTAAGCTGACTGCAGATTTGAAGGCGTTCAAGGCTTACGATAAG 581
Query 541 ATTCGTTTGGAGCGCACAAACGCACGTCATGCTGGTGCCAGAGCCAAGAGGGCCGCTGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 582 ATTCGTTTGGAGCGCACAAACGCACGTCATGCTGGTGCCAGAGCCAAGAGGGCTGCCGAG 641
Query 601 GCTGAGAAAGAAGAGAAGAAGTAAAAATCGTTGCTTTA--GAGCTTAATCATTCTTGAAT 658
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 642 GCTGAGAAAGAAGAGAAGAAGTAAAATTCGTTGCTTTATAGAGCTTAATCATTCTTGAAT 701
Query 659 TCTTCTTCTTCCGG------Atttt-t-ct----t-t-tttt-tttttGTTGCGGTTTAT 703
|||| |||||| || ||||| | | | | |||| |||||| ||||||||||
Sbjct 702 TCTTGTTCTTCTGGTTTTTGATTTTGTGCACGACTCTGTTTTCTTTTTGGTGCGGTTTAT 761
Query 704 CAATACTTAGATCTCGAAATTTTTCTGGGACTTGGGTTTTCTGAGTTTATGGAAGAAATT 763
|||||| |||||||| ||| ||||||| ||||||| |||||||||||||||||
Sbjct 762 CAATACATAGATCTC-AAAGGTTTCTGGTACTTGGGAA-----AGTTTATGGAAGAAATT 815
Query 764 ATAACGAGTTTCTATATAC 782
|||||||||||||||||||
Sbjct 816 ATAACGAGTTTCTATATAC 834
> AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved
1 | chr3:18166769-18168580 REVERSE LENGTH=891
Length=891
Score = 577 bits (312), Expect = 6e-164
Identities = 527/630 (84%), Gaps = 18/630 (3%)
Strand=Plus/Plus
Query 2 AAATGAAGCACAACAACGTTAT-CCCGA-GCTCACACTTTC-GCAAGCATTGGCAGAATT 58
|||||||||||||||| ||||| ||| | | | ||| ||| ||||| ||||||||||
Sbjct 67 AAATGAAGCACAACAATGTTATCCCCAATGGT--CAC-TTCAAAAAGCACTGGCAGAATT 123
Query 59 ATGTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGA 118
|||||||||| ||||| ||||| |||||||||||||| || ||| | |||| || || |
Sbjct 124 ATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGCGAGGCAAA 183
Query 119 AGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATG 178
|||||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||
Sbjct 184 AGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATG 243
Query 179 GTCAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGC 238
||||||||||||||||||||||||| || ||| | || ||||||||||||||||||||||
Sbjct 244 GTCAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGC 303
Query 239 TTAAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACC 298
| ||| ||||||||||||||||||||||||| || ||||| || ||| | ||||| || |
Sbjct 304 TCAAGGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATC 363
Query 299 GTCGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACA 358
||||||||||||| |||||||||||||||||| | ||||| || ||| |||| || ||||
Sbjct 364 GTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACA 423
Query 359 AGGCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAAAGTCAAGGCTGGTGATTCTACTC 418
|| | ||||| || | ||||| || ||| |||| || |||||||||||||| ||||| |
Sbjct 424 AGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGGCTGGTGACTCTACAC 483
Query 419 CAGAGGAGCTTG-CTAATGCTACCCAAGTCCAAGGTGATTACATGCCTATTGCTA-GTGA 476
|||| ||| ||| |||||||||||||||| ||||| || ||| ||||||||| || ||||
Sbjct 484 CAGAAGAG-TTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTG-TACGTGA 541
Query 477 GAAGGC-AGCCATGGAGCTTGTGAAGCTTACTGCGGATATGAAGGCGTTCAAGGCCTATG 535
|||| | | ||||||| || || ||||| ||| | || |||||| | |||||||| | ||
Sbjct 542 GAAGCCTA-CCATGGAACTCGTCAAGCTGACTTCAGAAATGAAGTCTTTCAAGGCTTTTG 600
Query 536 ATAAGATTCGT-TTGGAGCGCACAAAC--GCACGTCATGCTGGTGCCAGAGCCAAGAGGG 592
| ||||| || ||| ||||||| ||| | | | ||||| || || ||||||||||| |
Sbjct 601 ACAAGATACGCCTTG-AGCGCACTAACAAG-AGG-CATGCCGGAGCTAGAGCCAAGAGAG 657
Query 593 CCGCTGAGGCTGAGAAAGAAGAGAAGAAGT 622
|||| |||||||||||||||||||||||||
Sbjct 658 CCGCAGAGGCTGAGAAAGAAGAGAAGAAGT 687
> AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein
| chr3:18150444-18151412 REVERSE LENGTH=621
Length=621
Score = 512 bits (277), Expect = 2e-144
Identities = 516/630 (82%), Gaps = 22/630 (3%)
Strand=Plus/Plus
Query 4 ATGAAGCACAACAACGTTAT-CCCGA-GCTCACACTTTC-GCAAGCATTGGCAGAATTAT 60
||||||||||| || ||||| ||| | | | ||| ||| ||| | ||| | || |||
Sbjct 1 ATGAAGCACAATAATGTTATCCCCAATGGT--CAC-TTCAAAAAGAAGTGGGAAAACTAT 57
Query 61 GTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGAAG 120
||||| |||| ||| ||||||||||||| |||||| || ||| | |||| || |||||
Sbjct 58 GTCAAAACTTCGTTCAACCAACCTGCCATGAAAACCAGAAGAAGAATTGCGAGGCAGAAT 117
Query 121 AAGGCTGTGAAGATC-TTCCCTCGTCCCACCT-CTGGTCCTCTCCGACCTGTTGTTCATG 178
||||||||||||||| ||||| ||||||| || |||| ||| ||||||||||||| ||||
Sbjct 118 AAGGCTGTGAAGATCTTTCCC-CGTCCCA-CTGCTGGACCTATCCGACCTGTTGTACATG 175
Query 179 GTCAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGC 238
||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 176 CTCAGACTCTTACGTACAACATGAAAGTCAGAGCCGGTAAAGGATTCACTCTTGAAGAGC 235
Query 239 TTAAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACC 298
| ||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| || |
Sbjct 236 TAAAGGCTGCTGGTATCCCCAAGAAGTTGGCTCCTACAATCGGTATTTCTGTTGACCATC 295
Query 299 GTCGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACA 358
|||||||||||| |||||||||||| ||||| |||| || || ||| |||| || ||||
Sbjct 296 ATCGCAAGAACCGGTCTTTGGAGGGTTTTCAAACCAACGTCCAGAGGCTGAAAACCTACA 355
Query 359 AGGCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAA-AGTCAAGGCTGGTGATTCTACT 417
|||||||||||||| | ||||| ||| || |||| || ||||||| |||||||||| |
Sbjct 356 AGGCTAAGTTGGTTATCTTCCCGCGCTGTGCCCG-AACGGTCAAGGTTGGTGATTCTGCA 414
Query 418 CCAGAGGAGCTT-GCTAATGCTACCCAAGTCCAAGGT-GATTACATGCCTATTGCTAGTG 475
| | | ||| || || ||||| || ||||||||| || ||| |||||||||| | | |||
Sbjct 415 CAACAAGAG-TTGGCCAATGCAACACAAGTCCAA-GTAGATCACATGCCTATCGTTCGTG 472
Query 476 AGAA-GGCAGCCATGGAGCTTGTGAAGCTTAC-TGCGGATATGAAGGCGTTCAAGGCCTA 533
| || | || | ||||||||||||||||| || | | || ||||| |||||| || ||
Sbjct 473 A-AATGCCAACAATGGAGCTTGTGAAGCTGACAT-CTGACATGAAATTGTTCAATGCTTA 530
Query 534 TGATAAGATTCGTTTGGAGCGCACAAACGCA-CGTCATGCTGGTGCCAGAGCCAAGAGGG 592
||| ||||| ||| | ||| ||| |||| | | |||||||||| ||||||||||| |
Sbjct 531 TGACAAGATCCGTCTAGAGGGCATAAAC-AAGAGACATGCTGGTGTTAGAGCCAAGAGAG 589
Query 593 CCGCTGAGGCTGAGAAAGAAGAGAAGAAGT 622
| ||||||||||||||||||||||||||||
Sbjct 590 CTGCTGAGGCTGAGAAAGAAGAGAAGAAGT 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38027249279
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5