BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489251 Length=782 Score E Sequences producing significant alignments: (Bits) Value AT5G23900.1 | Symbols: | Ribosomal protein L13e family protein... 1099 0.0 AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conser... 577 6e-164 AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein... 512 2e-144 > AT5G23900.1 | Symbols: | Ribosomal protein L13e family protein | chr5:8063985-8065523 REVERSE LENGTH=856 Length=856 Score = 1099 bits (595), Expect = 0.0 Identities = 735/799 (92%), Gaps = 23/799 (3%) Strand=Plus/Plus Query 1 AAAATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCATTGGCAGAATTAT 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 42 AAAATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTAT 101 Query 61 GTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGAAG 120 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 102 GTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGCTAGACAGAAG 161 Query 121 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 221 Query 181 CAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 CAGACACTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 281 Query 241 AAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACCGT 300 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 282 AAGGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGA 341 Query 301 CGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACAAG 360 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct 342 CGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAAGGTTAAAGACTTACAAG 401 Query 361 GCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAAAGTCAAGGCTGGTGATTCTACTCCA 420 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 402 GCTAAGTTGGTGGTGTTCCCTCGCCGTTCCCGTCAAGTCAAGGCTGGTGATTCTACTCCA 461 Query 421 GAGGAGCTTGCTAATGCTACCCAAGTCCAAGGTGATTACATGCCTATTGCTAGTGAGAAG 480 ||||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||| ||| Sbjct 462 GAGGAGCTTGCCAATGCTACTCAAGTTCAAGGTGATTACATGCCAATTGCCAGTGTCAAG 521 Query 481 GCAGCCATGGAGCTTGTGAAGCTTACTGCGGATATGAAGGCGTTCAAGGCCTATGATAAG 540 ||||| |||||||| || ||||| ||||| ||| |||||||||||||||| || |||||| Sbjct 522 GCAGCTATGGAGCTAGTTAAGCTGACTGCAGATTTGAAGGCGTTCAAGGCTTACGATAAG 581 Query 541 ATTCGTTTGGAGCGCACAAACGCACGTCATGCTGGTGCCAGAGCCAAGAGGGCCGCTGAG 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 582 ATTCGTTTGGAGCGCACAAACGCACGTCATGCTGGTGCCAGAGCCAAGAGGGCTGCCGAG 641 Query 601 GCTGAGAAAGAAGAGAAGAAGTAAAAATCGTTGCTTTA--GAGCTTAATCATTCTTGAAT 658 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 642 GCTGAGAAAGAAGAGAAGAAGTAAAATTCGTTGCTTTATAGAGCTTAATCATTCTTGAAT 701 Query 659 TCTTCTTCTTCCGG------Atttt-t-ct----t-t-tttt-tttttGTTGCGGTTTAT 703 |||| |||||| || ||||| | | | | |||| |||||| |||||||||| Sbjct 702 TCTTGTTCTTCTGGTTTTTGATTTTGTGCACGACTCTGTTTTCTTTTTGGTGCGGTTTAT 761 Query 704 CAATACTTAGATCTCGAAATTTTTCTGGGACTTGGGTTTTCTGAGTTTATGGAAGAAATT 763 |||||| |||||||| ||| ||||||| ||||||| ||||||||||||||||| Sbjct 762 CAATACATAGATCTC-AAAGGTTTCTGGTACTTGGGAA-----AGTTTATGGAAGAAATT 815 Query 764 ATAACGAGTTTCTATATAC 782 ||||||||||||||||||| Sbjct 816 ATAACGAGTTTCTATATAC 834 > AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166769-18168580 REVERSE LENGTH=891 Length=891 Score = 577 bits (312), Expect = 6e-164 Identities = 527/630 (84%), Gaps = 18/630 (3%) Strand=Plus/Plus Query 2 AAATGAAGCACAACAACGTTAT-CCCGA-GCTCACACTTTC-GCAAGCATTGGCAGAATT 58 |||||||||||||||| ||||| ||| | | | ||| ||| ||||| |||||||||| Sbjct 67 AAATGAAGCACAACAATGTTATCCCCAATGGT--CAC-TTCAAAAAGCACTGGCAGAATT 123 Query 59 ATGTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGA 118 |||||||||| ||||| ||||| |||||||||||||| || ||| | |||| || || | Sbjct 124 ATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGCGAGGCAAA 183 Query 119 AGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATG 178 |||||||||||||||||||||||||||| || ||||| |||||||| |||||||| |||| Sbjct 184 AGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATG 243 Query 179 GTCAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGC 238 ||||||||||||||||||||||||| || ||| | || |||||||||||||||||||||| Sbjct 244 GTCAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGC 303 Query 239 TTAAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACC 298 | ||| ||||||||||||||||||||||||| || ||||| || ||| | ||||| || | Sbjct 304 TCAAGGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATC 363 Query 299 GTCGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACA 358 ||||||||||||| |||||||||||||||||| | ||||| || ||| |||| || |||| Sbjct 364 GTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACA 423 Query 359 AGGCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAAAGTCAAGGCTGGTGATTCTACTC 418 || | ||||| || | ||||| || ||| |||| || |||||||||||||| ||||| | Sbjct 424 AGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGGCTGGTGACTCTACAC 483 Query 419 CAGAGGAGCTTG-CTAATGCTACCCAAGTCCAAGGTGATTACATGCCTATTGCTA-GTGA 476 |||| ||| ||| |||||||||||||||| ||||| || ||| ||||||||| || |||| Sbjct 484 CAGAAGAG-TTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTG-TACGTGA 541 Query 477 GAAGGC-AGCCATGGAGCTTGTGAAGCTTACTGCGGATATGAAGGCGTTCAAGGCCTATG 535 |||| | | ||||||| || || ||||| ||| | || |||||| | |||||||| | || Sbjct 542 GAAGCCTA-CCATGGAACTCGTCAAGCTGACTTCAGAAATGAAGTCTTTCAAGGCTTTTG 600 Query 536 ATAAGATTCGT-TTGGAGCGCACAAAC--GCACGTCATGCTGGTGCCAGAGCCAAGAGGG 592 | ||||| || ||| ||||||| ||| | | | ||||| || || ||||||||||| | Sbjct 601 ACAAGATACGCCTTG-AGCGCACTAACAAG-AGG-CATGCCGGAGCTAGAGCCAAGAGAG 657 Query 593 CCGCTGAGGCTGAGAAAGAAGAGAAGAAGT 622 |||| ||||||||||||||||||||||||| Sbjct 658 CCGCAGAGGCTGAGAAAGAAGAGAAGAAGT 687 > AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein | chr3:18150444-18151412 REVERSE LENGTH=621 Length=621 Score = 512 bits (277), Expect = 2e-144 Identities = 516/630 (82%), Gaps = 22/630 (3%) Strand=Plus/Plus Query 4 ATGAAGCACAACAACGTTAT-CCCGA-GCTCACACTTTC-GCAAGCATTGGCAGAATTAT 60 ||||||||||| || ||||| ||| | | | ||| ||| ||| | ||| | || ||| Sbjct 1 ATGAAGCACAATAATGTTATCCCCAATGGT--CAC-TTCAAAAAGAAGTGGGAAAACTAT 57 Query 61 GTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGAAG 120 ||||| |||| ||| ||||||||||||| |||||| || ||| | |||| || ||||| Sbjct 58 GTCAAAACTTCGTTCAACCAACCTGCCATGAAAACCAGAAGAAGAATTGCGAGGCAGAAT 117 Query 121 AAGGCTGTGAAGATC-TTCCCTCGTCCCACCT-CTGGTCCTCTCCGACCTGTTGTTCATG 178 ||||||||||||||| ||||| ||||||| || |||| ||| ||||||||||||| |||| Sbjct 118 AAGGCTGTGAAGATCTTTCCC-CGTCCCA-CTGCTGGACCTATCCGACCTGTTGTACATG 175 Query 179 GTCAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGC 238 ||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 176 CTCAGACTCTTACGTACAACATGAAAGTCAGAGCCGGTAAAGGATTCACTCTTGAAGAGC 235 Query 239 TTAAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACC 298 | ||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| || | Sbjct 236 TAAAGGCTGCTGGTATCCCCAAGAAGTTGGCTCCTACAATCGGTATTTCTGTTGACCATC 295 Query 299 GTCGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACA 358 |||||||||||| |||||||||||| ||||| |||| || || ||| |||| || |||| Sbjct 296 ATCGCAAGAACCGGTCTTTGGAGGGTTTTCAAACCAACGTCCAGAGGCTGAAAACCTACA 355 Query 359 AGGCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAA-AGTCAAGGCTGGTGATTCTACT 417 |||||||||||||| | ||||| ||| || |||| || ||||||| |||||||||| | Sbjct 356 AGGCTAAGTTGGTTATCTTCCCGCGCTGTGCCCG-AACGGTCAAGGTTGGTGATTCTGCA 414 Query 418 CCAGAGGAGCTT-GCTAATGCTACCCAAGTCCAAGGT-GATTACATGCCTATTGCTAGTG 475 | | | ||| || || ||||| || ||||||||| || ||| |||||||||| | | ||| Sbjct 415 CAACAAGAG-TTGGCCAATGCAACACAAGTCCAA-GTAGATCACATGCCTATCGTTCGTG 472 Query 476 AGAA-GGCAGCCATGGAGCTTGTGAAGCTTAC-TGCGGATATGAAGGCGTTCAAGGCCTA 533 | || | || | ||||||||||||||||| || | | || ||||| |||||| || || Sbjct 473 A-AATGCCAACAATGGAGCTTGTGAAGCTGACAT-CTGACATGAAATTGTTCAATGCTTA 530 Query 534 TGATAAGATTCGTTTGGAGCGCACAAACGCA-CGTCATGCTGGTGCCAGAGCCAAGAGGG 592 ||| ||||| ||| | ||| ||| |||| | | |||||||||| ||||||||||| | Sbjct 531 TGACAAGATCCGTCTAGAGGGCATAAAC-AAGAGACATGCTGGTGTTAGAGCCAAGAGAG 589 Query 593 CCGCTGAGGCTGAGAAAGAAGAGAAGAAGT 622 | |||||||||||||||||||||||||||| Sbjct 590 CTGCTGAGGCTGAGAAAGAAGAGAAGAAGT 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38027249279 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5