BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489252
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23903.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 512 1e-144
> AT5G23903.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G07680.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:8066419-8067096 FORWARD LENGTH=485
Length=485
Score = 512 bits (277), Expect = 1e-144
Identities = 393/444 (89%), Gaps = 27/444 (6%)
Strand=Plus/Plus
Query 1 ATGTCTCGTGTCCT-C-CTTT-TGTTCATCTTTTCTTTGTCGGTTTTGGTTGGATCAATC 57
|||||||||||||| | |||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCTCGTGTCCTCCTCTTTCTCTTCATCTTTTCTTTATCGGTTTTGGTTGGATCAATC 60
Query 58 AATGGACGATCATGTGGATCATCGACGCCCACTTCAGAGGATATGTACCAAAAA-CAGAT 116
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 61 AATGGACGGTCATGTGGATCATCGACGCCCACTTCAGAGGATATGTAC-AAAAAGCAGAT 119
Query 117 GGAAAGAG-CCGACGAATCAGCA-GATCGAA-TGGGAAGGATTGGTTTGGAGTGTGAACC 173
|||||| | |||| ||||||||| | | ||| ||||||||||||||||||||||||||||
Sbjct 120 GGAAAG-GTCCGAGGAATCAGCACG-T-GAAATGGGAAGGATTGGTTTGGAGTGTGAACC 176
Query 174 CCAAGGGTACACAGGTGGTTCAGGCAACACGAACTACTCTGTTGGTGCTACCATTCTCGG 233
| ||||||||||||||||||||||||||||||||| || ||||||| || ||||||||
Sbjct 177 CGAAGGGTACACAGGTGGTTCAGGCAACACGAACT-CT--GTTGGTGATATGATTCTCGG 233
Query 234 GTTCTTCATTCTTTTCTTTATTTTTGGTGCCCCCATTGTGATCTGTCTCGCCTGTATCCG 293
||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| | ||
Sbjct 234 CTTCTTCATTCTTTTCTTTATTGTTGGTGCCCCCATTATGATCTGTCTCGCGTGTGTTCG 293
Query 294 GAGGCAAAAGGCTATAAACGCAGCCAATCTCAATAATGTTTCTAGTCAAGTGGTGGGAGC 353
||| ||| |||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct 294 GAGACAACAGGCTATAAACGCAGCCAATCTCAATAACGTTTCCGGTCAAGTGGTAGGAGC 353
Query 354 TCATGTGGCTCATGGAACTGATCTCAAGTCTTATCCGG-GAACCAAC-ACCGTCCAAAAG 411
||||| | | | ||||||||||||||||||| || | | ||||||||||||
Sbjct 354 TCATG-G----A---A-CTGATCTCAAGTCTTATCCTCAGA-C-AGGGACCGTCCAAAAG 402
Query 412 GGAGATCCCAATTACCAAGTTTGA 435
||||||||||||||||||||||||
Sbjct 403 GGAGATCCCAATTACCAAGTTTGA 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5