BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489253
Length=2456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23910.1 | Symbols: | ATP binding microtubule motor family ... 1247 0.0
> AT5G23910.1 | Symbols: | ATP binding microtubule motor family
protein | chr5:8068452-8072991 FORWARD LENGTH=2374
Length=2374
Score = 1247 bits (675), Expect = 0.0
Identities = 977/1110 (88%), Gaps = 72/1110 (6%)
Strand=Plus/Plus
Query 1388 GAAATCTGTTCGTC-ATTTACTGTTACAGATTCTCAATCTTCTTTGGTAGAAGAGGAATA 1446
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1294 GAAATCTGTTCGTCGA-TTACTGTTACAGATTTTCAATCTTCTTTGGTAGAAGAGGAATA 1352
Query 1447 TTCTCTGGCTTTCTCAAGTTATGCAGTAGCCATGGAACCGGTAAATTTTCCATCTGCAAC 1506
|||||||||||| ||||| | | | | | |||| | ||| || ||
Sbjct 1353 TTCTCTGGCTTTTTCAAG---T----T---C-T---A-CGGT--A---GCCA--TGGAA- 1389
Query 1507 TTCTCTGGCTATTCAACTAATGCATCTTTAAGCTCAGAAGCTGTTGACATTACAGAAAAG 1566
| | |||||||||| | |||||||||||||||||||||| || ||| |||||| |||
Sbjct 1390 --C-CGGGCTATTCAAATGGTGCATCTTTAAGCTCAGAAGCTATTTACACTACAGATAAG 1446
Query 1567 GAGACACCCTGGAAACATGAGGAAATTTTTTCAGGAGCCACTCATTGTGATGATGCTTTT 1626
||||||||| ||||||| |||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1447 GAGACACCCCGGAAACAAGAGGAAATGTTTGCTGGAGCCACTCATTGTGATGATGCTTTT 1506
Query 1627 GCAGACAAAGCACAAATAGTAGAGAGAGATGAAAACAATTCAGTCATT---GACGATCTG 1683
| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1507 GTAGACAAAGCACAAATAGTAGAGAGAGATGAAAACAATTCAGTCATTGAAGAAGATCTG 1566
Query 1684 GCTCTGGTTATTAATAAAGGTGAAAACCTGGACAAAGAGAACAACAGTTTGCTAGCCAAT 1743
||||||||||| || |||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 1567 ACTCTGGTTATTGATGAAGGTGAAAATCTGGACAAAGAAAACAACAGTTTGCTAGCAAAT 1626
Query 1744 GAAACTGCATCACCACCGCTTAGCATGCGACTTCAAGAACTATCAAACAATTTGAAGTCG 1803
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1627 GAAACTGCATCACCACCCCTCAGCATGCGACTTCAAGAACTATCAAACAATTTGAAGTCG 1686
Query 1804 ATATGCAAAATCTCAAACCAACTATCAGTACCTGAGAAATATCAAAGTCCCTTAACTATA 1863
||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1687 ATATGCAAATTCTCAAACCAACTATCAGTACCTGAGAAACATCAAACTCCCTTAACTATA 1746
Query 1864 TTACAGGCGGACGAAGCATCAGAGCACAGCGATATTACTGCTGAAGCTGCTGTCAGTGGA 1923
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 1747 TTACAGGCGGAAGAAGCATCAGAGCACAGTGATATTACTGCTGAAGCTGCTGTTAGTATA 1806
Query 1924 GAACTAAGAACACCGGAGAGAACTATGCCTTCGAACATTGGCTGCAGTCCTTGGAAGGCA 1983
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1807 GAACTAAGAACGCCGGAGAAAACTATGCCTTCGAACATTGGCTGCAGTCCTTGGAAGACA 1866
Query 1984 TATAGCGCACACAGCTCTAAATTGAAGAACTCTGCTGTTGGAGAATACCTCAAGTTCATA 2043
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1867 TATAGCGCACACAGCTCTAAATTGAAGAATTCTGCTGTTGGAGAGTACCTCAAGTTCATA 1926
Query 2044 AACACAGCTGGAAAGGAAGATCTAAAGAAGTTAAAGGGTATTGGCGACAAGAGAGCAGCG 2103
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1927 AACACAGCTGGAAAGGAAGATCTAAAGAAGTTAAAGGGTATTGGGGACAAGAGAGCAGCT 1986
Query 2104 TACATAGTTGAGCTCCGCGAAGAATCTCCATTTAAAACGGTTGATGATTTGAAAAGTATC 2163
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1987 TACATAGTTGAGCTCCGCGAAGAATCTCCATTTAAAACGCTTGATGATTTGCAAAGTATC 2046
Query 2164 GGACTCTCAGCAAAACAGGTTAAGGGATTGCTGAAAAAAGAAATCGGGGAGATTTTC--G 2221
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 2047 GGACTCTCAGCAAAACAGGTTAATGGATTGCTGAAAAAAGAGATCGGGGAGATTTTCTAG 2106
Query 2222 -AGT--AG-----TTC---AC--------A-A-CAAATAG-ATCTGAAGATATTTATGAA 2259
||| || ||| || | | ||||| | ||||||| |||||||||||
Sbjct 2107 TAGTTGAGGGACATTCTCTACGGTTGTTCACAACAAAT-GTATCTGAAAATATTTATGAA 2165
Query 2260 GGTTTC--GAG---GC-A---A-CACGACATTGCTTCTAAGATTTCGAAGGTCTATATAG 2309
|||||| ||| || | | ||||| |||||||||||||||| ||| |||||||||
Sbjct 2166 GGTTTCTAGAGATTGCGAGGCAACACGATGTTGCTTCTAAGATTTCAAAGTTCTATATAG 2225
Query 2310 GA-GGCTAAGTTGTTGAATGTGTAATTCGTGTTATTACGAGATCTTAATTTGTGGTTTCA 2368
|| ||||||||||||||||||||||| ||||||| || |||| |||||||| ||||| ||
Sbjct 2226 GAAGGCTAAGTTGTTGAATGTGTAATGCGTGTTACTATGAGAACTTAATTTATGGTTACA 2285
Query 2369 ATACTTTCAATTGAATTTGTGTCGTACTGTCTAAAGA-TTTGGGTTATTTCAAAGGCAAT 2427
||||||| |||| |||||||||||||||||| ||| | ||||||| ||||||||||||||
Sbjct 2286 ATACTTTAAATTCAATTTGTGTCGTACTGTCCAAA-ACTTTGGGT-ATTTCAAAGGCAAT 2343
Query 2428 GTGAAGTAGTATCAAATTTCC-TTTTCATA 2456
|||||||||||||||||| || |||| |||
Sbjct 2344 GTGAAGTAGTATCAAATT-CCATTTTTATA 2372
Score = 1149 bits (622), Expect = 0.0
Identities = 735/790 (93%), Gaps = 5/790 (1%)
Strand=Plus/Plus
Query 549 TCAGGTACCTGTGAAGTCGCTCTCAGAATTCCAGAACTTATATTATGGTCTCAAGAAATC 608
|||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct 513 TCAGGTACCTGTGAAGTCACTCTCAGAATTCCAGAACTTATATTTTGGTTTCAAGAAATC 572
Query 609 CCAGAAGCTGACCAGTGACCCTCCAGTTAGGAGTCATAAAGGTGTGATGATACACGTTAC 668
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 573 CCAGAAGCTGACCAGTGACCTTCCAACTAGGAGTCATAAAGGTGTGATGATACATGTTAC 632
Query 669 CACTGGCAACGCCAATCCAGGCTCCCTTGGGAGGATGAACTTTCTTGATATGGCAGGATA 728
||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 633 TACTGGAAACGCCAATTCAGGCTCCCTTGGGAGAATGAACTTTCTTGATATGGCAGGATA 692
Query 729 TGAGGATTCCAGGAAACAAAACAGTGCTCTAGCTCCTCTAGAGATTGCCAGAATTAATAA 788
|||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||
Sbjct 693 TGAGGATTCCAGGAAACAAAACAGTGCTTTAGGTCCTCTAGAGATTGCTAGAGTTAATAA 752
Query 789 GTCGATATATGCTTTACAGAATGTCATGTATGCTCTCAACACAAATGAATCCCATGTGCC 848
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 753 GTCGATATATGCTTTACAGAATGTCATGTATGCTCTAAACGCAAATGAATCCCATGTGCC 812
Query 849 ATATCGGGAGAGCAAACTCACTCGAATGCTGAAAGATTGTTTTAAAGGATGCAACAGAAC 908
|||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||
Sbjct 813 ATATCGGGAGAGCAAACTCACTCGTATGCTGAAAGATTGTTTAAAAGGATCCAACATAAC 872
Query 909 GCTGCTGATCACATGTTTGCCCCGGAAATTTAGCCAAGACTCCTTTTACATGCTAAACTT 968
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 873 TTTGCTAATCACATGTTTGCCCCGGGAATTTAGCCAAGACTCCTTTTACATGCTAAACTT 932
Query 969 AGCATCACGGATCTGTCTAGGCAGTAACCGAGCCATGAATAATCCTACTAAGAAGAAGAT 1028
|||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||
Sbjct 933 AGCATCACGGATCTGTCTAGGCGGTAACCGAGCCATCACTAATCCTACCAAGAAGAAGAT 992
Query 1029 CAACGGTC-CTGAAAGATCTATTTCATTATCATCTGCCGCTCAAAGGAGACAGACACCTT 1087
||| |||| | || |||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 993 CAATGGTCTC-GATAGATCTGTTTCATTATCCTCAGCCGCTCAAAGGAGACAGACACCTT 1051
Query 1088 TGAATGTGTCTGCTACTTCTAGAAAACAGACAATGCTAAGGGGAAGTGTGACAGAGAGAA 1147
||| | |||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct 1052 TGACTATGTCTGCTGCTTCTAGAAAACAGACAGTGCTGAGGGGAAATGTGACAGAGAGAA 1111
Query 1148 AGACTAAAATCAACAATGCTGCTTCTGCAATTAAAGCAAGGAAACTGTTCGGTGAAGCAA 1207
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1112 AGACTAAAATCAACACTGCTACTTCTGCAATTAAAGCAAGGAAACTGTTCGGTGAAGCAA 1171
Query 1208 ACGATTCGGTGAAATGTAAAAATAGCTCTAAGAAGATGGAAGGCAAATCAA-GAATGGCT 1266
| ||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||| |
Sbjct 1172 ATGATTCGGTGAAATGTAAAAATAGCTCTAAGAAGGTGGAAGGCAAAGCAAAGA-TGGTT 1230
Query 1267 CTGAAAAATGTAATCTCCACTTCAAAGGTTGTCTCGAGCATTCAGGCCTCTTCACCTAAA 1326
|||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1231 CTGAAAAAGGGAATCTCCACTTCAAAGGTTGTCTTGAGCGTTCAGGCCTCTTCACCTAAA 1290
Query 1327 GAAGTAAATC 1336
|||| |||||
Sbjct 1291 GAAG-AAATC 1299
Score = 706 bits (382), Expect = 0.0
Identities = 474/519 (91%), Gaps = 4/519 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAGCCATGGCCGGAAAGTGGTCCGGGTGGTGGCTAGGGTCAAGCCTTCGACGGAT 60
|||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACGAGCCATGGCCGGAAAGTAGTCCGGGTGGTGGCTAGGGTCAAGCCATCGACGGAT 60
Query 61 CTGGTATCAACGAGATCAATATCGGTTCACAAGCCGCTGGGTGAAGATTCAGAGAGTGTT 120
|||| |||||||| |||||| |||||||| || ||| ||||||| |||||||||| ||||
Sbjct 61 CTGGCATCAACGAAATCAATTTCGGTTCAGAAACCGATGGGTGATGATTCAGAGACTGTT 120
Query 121 TCGATTTCGTTTGGAGCTCAATTCGCTGGTTCGAAAGATTCATATAAATTGGACTATTGC 180
| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 121 ACAATTTCGTTCGGAGCTCAATTCGCTGGATCGAAAGATTCATATAGATTGGACTATTGC 180
Query 181 TATGAAGAAAATGAAACCACAAGTTCAATTCTCACAAAGGAGATAAAGCCTCTTATCTCT 240
|| |||||||||||||| || ||||||||||||| |||||||||||||||||||| |||
Sbjct 181 TACGAAGAAAATGAAACTACTGGTTCAATTCTCACTAAGGAGATAAAGCCTCTTATATCT 240
Query 241 ACTGTCTTTGAGGGTAAAGATGCGAATGTCATAGCCCAAGGAGCTAGAAATGGCGGAAAA 300
|||||||||||||||||||||||||||||||| ||||| ||||| |||||| | || |||
Sbjct 241 ACTGTCTTTGAGGGTAAAGATGCGAATGTCATCGCCCACGGAGCAAGAAATAGTGGTAAA 300
Query 301 ACACATCTAATACAGGGAAATGAGAGGGAGCTTGGTTTAACTGTTCTTACAATGTCTGAG 360
|||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 301 ACACATCTGATACAGGGAAATGAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAG 360
Query 361 ATGCTATCCATGGCTGAGGAAAGAGGAGACTCAG-TTTCTGTATCAGTTTACGAGGTTTC 419
||| |||||||||||||||||||||||||| | | ||| |||||||||||||||||| ||
Sbjct 361 ATGTTATCCATGGCTGAGGAAAGAGGAGACGC-GATTTTTGTATCAGTTTACGAGGTGTC 419
Query 420 TCAAGAAACCGTGTATGACCTGTTAGGCCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAG 478
||||||||| |||||||||||||||| |||||||||| |||||||| | |||| | ||||
Sbjct 420 TCAAGAAACTGTGTATGACCTGTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAG 478
Query 479 GTGCACAAGGGAAAATTCAACTAAAGGGACTTTCTCAGG 517
|||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGCACAAGGGAAAATTCAACTAAAGGGACTTTCTCAGG 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121855504547
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5