BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489254
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23930.1 | Symbols: | Mitochondrial transcription terminati... 1941 0.0
> AT5G23930.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:8074625-8075998 REVERSE LENGTH=1374
Length=1374
Score = 1941 bits (1051), Expect = 0.0
Identities = 1266/1369 (92%), Gaps = 17/1369 (1%)
Strand=Plus/Plus
Query 1 ATGTATTCATTGATACTCCAAGGTGGAAGAAGGTCACGCGAGTTACATCAATGGCAGAAT 60
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGTTTTCATTAATACTCCATGGTGGAAGAAGGTCACGCGAGTTACATCAATGGCGGAAT 60
Query 61 CGAGTAATGAATCTTCTTCTCCAAAACGGCTCTACTTTCACTGAATCGTTCTCTTCTGTT 120
| |||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 61 C------TGAATCTTCTTCTCCAAAACTCCTCTGCTTTCACTGAATCGTTCTCTTCCGTT 114
Query 121 GTTGCTACCGCTAAAGATCTAAGTTTTGAAGATGAAAGAAAGAGGAAGACTTTCACAGTC 180
||| |||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 115 GTTACTACTACTAAAGATCTAAGTCTTGAAGATGAACGAAAGAGGAAAACTTTCACAGTC 174
Query 181 TCTTACCTTATTGATTCATTAGGGTTAACTACAAAACTCGCTGAATCAATCTCAATGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCTTACCTTATTGATTCATTAGGGTTAACTACAAAACTCGCTGAATCAATCTCAATGAAA 234
Query 241 GCTAATTTCGATGAAAAAGGTAATCCAGATTCAGT-CTTGAAACTTCT-ACGAAGCTATG 298
||||| ||||||||||||||||||||||||||||| ||| ||||| || | |||||||||
Sbjct 235 GCTAACTTCGATGAAAAAGGTAATCCAGATTCAGTGCTT-AAACT-CTTAAGAAGCTATG 292
Query 299 GATTCAAAGATTGTCAAATCTCAAGTATCATTGCTACTTACCCACGATTTCTTGTTGAGA 358
|||||||||||| ||||||||||||||| ||| | ||||||||||||||||| ||||||
Sbjct 293 GATTCAAAGATTCTCAAATCTCAAGTATTATTTCCACTTACCCACGATTTCTCATTGAGA 352
Query 359 GTCCTGAGAAATCTCTTCGTGCTAAGCTTCATTTCTTGAAGCTAAATGGAGCTTCAAGCT 418
|||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 353 ATCCTGAGAAAACTCTTCGTGCTAAACTTCATTTCTTGAAGCTTAACGGAGCTTCAAGCT 412
Query 419 CTGAGCTTACTGAGATTGTTTCGAAAGTACCTAAAATCTTGGGGAAGAGAGGAGGGAAAT 478
|||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct 413 CTGAGCTTACAGAGATTGTTTCAAAAGTTCCTAAGATCTTGGGAAAGAGAGGAGGGAAAT 472
Query 479 GGATTATTCATTACTATGATTATGTCAAAGAGATCTTGCAAGATCAAGATACGAGTTCTT 538
|||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 473 GGATTAGTCATTACTATGATTATGTCAAAGAGATTTTGCAAGATCAAGATTCTAGTTCTT 532
Query 539 CTTC--C-AAGAGAAAGCAGACGAATCGAAATCGAAATGTATCGGTTTTGAGAGAATTGG 595
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 533 CTTCTTCCAAGAGAAAGCAGACGAATCGAAATCGAAATGTATCGGTTTTGAGAAAATTAG 592
Query 596 GAGTGCCTCAGAGACTGTTATTGAACTTGTTGATATCTAGAGCTAAACCAGTTTGTGGGA 655
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 593 GAGTACCACAGAGACTGTTATTGAACTTGTTGATCTCTAGAGCTAAACCAGTTTGTGGTA 652
Query 656 AAGAAAGATTTGAAGAATCGGTTAAGAAGATTGTTGAGATGGGTTTTGATCCAAAAAGTC 715
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 653 AAGAAAGATTTGAAGAATCGGTTAAGAAGATTGTTGAGATGGGTTTTGATCCGAAAAGTC 712
Query 716 CAAAGTTTGTCAGTGCTTTGTATGTTTTCTATGATCTTAGTGATAAGACTATAGAGGAGA 775
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 713 CAAAGTTTGTTAATGCTTTGTATGTTTTCTATGAGCTTAGTGATAAGACTATAGAGGAGA 772
Query 776 AAGTGAATGCTTATAAAAGGTTAGGACTTTCT-TTGGATGAAGTTTGGGCAGTTTTCAAG 834
||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||
Sbjct 773 AAGTGAATGCTTATATAAGGTTAGGACTTAGTGTTA-ATGAAGTTTGGGCAGTTTTCAAG 831
Query 835 AAATGGCCTTTCTCTTTGAAATACTCGGAGAAGAAGATTATTCAGACGTTTGAGACTTTG 894
|||||||||||||||||||||||||| |||||||| || ||||| | |||||||||||||
Sbjct 832 AAATGGCCTTTCTCTTTGAAATACTCTGAGAAGAATATAATTCAAAAGTTTGAGACTTTG 891
Query 895 AAACGGGTTGGTCTAAGGGAAGAAGAGGTATGCTTAATGGTTAAGAGGTACCCTGAATGT 954
||||| |||||||||| | |||||||||| |||||| ||||||||| |||||||||||||
Sbjct 892 AAACGTGTTGGTCTAACGAAAGAAGAGGTCTGCTTAGTGGTTAAGAAGTACCCTGAATGT 951
Query 955 GTAGGGACTTCAGAGGAGAAGATAGTGAAGTCAGTTGAAACTTTTCTTGAGTTAGGATTC 1014
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 952 GTAGGGACTTCAGAGGAGAAGATAGTGAAGTCAGTTAAAACTTTTCTTGAGCTAGGATTT 1011
Query 1015 ACAAAAGACGAG-TTTGTGATGATCATCAAGCGGCATCCTCAGTGCATTGGATTAGCTGC 1073
|| ||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1012 ACGAAAGACGAGGTTT-TGATGATCATTAAGCGACATCCTCAGTGCATTGGATTAGCTGC 1070
Query 1074 GGATTCGGTGAAGAAGAAGTCCGAGTTTCTTGTGAAGACAATGGGTTGGCCTTTGAAGGT 1133
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1071 GGATTCGGTGAAGAAGAAGACCGAGTTTCTTGTGAAGACAATGGGTTGGCCTTTAAAGGT 1130
Query 1134 TGTAGCTTCAACCCCCATTGTACTTGGATTCAGCTTGGAGAAGTTTGTTTTACCGCGGTG 1193
||||||||| || || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1131 TGTAGCTTCGACTCCTATTGTACTTGGTTTCAGCTTGGAGAAGTTCGTTTTACCGCGGTG 1190
Query 1194 TAATGTAATCAAAGCTCTTTTGTCGAACGGGCTGATCGATGAAATCCCTGCGATCTCGTC 1253
||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||
Sbjct 1191 TAATGTAATCAAAGCTCTTATGTCGAACGGGCTGATCGGTGAAATGCCTGCGATATCGTC 1250
Query 1254 TGTATTGACGAGTCCTAAGCTGAAGTTTTTGAAGCTCTTTGTGGAGAAGCACCAAGATGT 1313
||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1251 TGTTTTGACGAGTCCTAAGCTGAAGTTTTTGAAGCTTTTTGTGGAGAAGCATCAGGATGT 1310
Query 1314 GTTGCCTGAGTTGAACTCTATCTTCACTGGAGATAACGTTCTAGTAAAT 1362
||||||||||||||||||||||||||| ||||||| | ||||| |||||
Sbjct 1311 GTTGCCTGAGTTGAACTCTATCTTCACCGGAGATAGCATTCTAATAAAT 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5