BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489255
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23970.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1897 0.0
> AT5G23970.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:8096290-8097660 FORWARD LENGTH=1371
Length=1371
Score = 1897 bits (1027), Expect = 0.0
Identities = 1256/1365 (92%), Gaps = 21/1365 (2%)
Strand=Plus/Plus
Query 1 TTTTGAATTTTTTGTTGAAAAAGACGAAGTG-G-CAATGAAGCTAGAATTCGTAAGCAAA 58
||| |||| |||||||||||||||||||||| | ||||||||||||| || ||||||||
Sbjct 1 TTTAGAATATTTTGTTGAAAAAGACGAAGTGAGAAAATGAAGCTAGAACTCTTAAGCAAA 60
Query 59 GAAATAATCAAACCCGCTTCACCTAATCATCCCCAAACCCTTTCTCTTTCTCTCTTCGAC 118
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GAAGTAATCAAACCCGCTTCACCTAATCATCTCCAAACCCTTTCTCTTTCTCTCTTCGAC 120
Query 119 CAGTTTCTTCCTTCAACTTACGTTTCCGCCATTTTCTTCTACGATGAACAAGCAAACCAA 178
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 121 CAGTTTCTTCCTTCAACTTACGTTTCCGCCATTTTCTTTTACGATGATCACTCAAACCAA 180
Query 179 GAAGACATAATCGTCCAGAGGCTCAAGAGCTCACTCTCTCAGACTCTGTCTCTTTTTTAT 238
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAAGAC---A---TCCAGAGGCTCAAAAGCTCACTCTCTCAGACTCTGTCTCTTTTTTAT 234
Query 239 CCACTCGCTGGACAAATCAAAGATGGTGTCACTGTTCATTGCAACGACCAAGGAGCTTTG 298
|||||||||||||||||||||||||| || ||||| ||||||||||| | |||||||||
Sbjct 235 CCACTCGCTGGACAAATCAAAGATGGAGTTACTGTCCATTGCAACGATGAGGGAGCTTTG 294
Query 299 TTTACAGAGGCACGGGCTGATATATTTCTCTCTGATTTCCTGAGAAATCCATCAGATGCT 358
||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 295 TTTACTGAGGCACGGGCTGAAATATTTCTCTCGGATTTTCTGAGAAACCCATCAGATGCT 354
Query 359 GATTTGGTTCACGAGTTCATTGTCTCTCCGGACCATGCAGATCCAGAAACCTGGCCGTTG 418
|||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 355 GATTTGATTCAAAAGTTCATTGTCTCTCCGGACCATGCAGATCCAGAAACATGGCCGTTG 414
Query 419 TTGCATGTCAAGGTCATTTTCTTTAAAGACAGAGGATTTGCGGTTGCAGTTAGCGTGTCT 478
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 415 TTGCACGTCAAGGTCATCTTCTTTAAAGACAAAGGATTTGCGGTTGCAGTTAGCGTGTCG 474
Query 479 CACAAGATATGCGATGCGGCCTCGTTGTCAACGTTTGTTTGCAGCTGGACAAACGCTTCA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 475 CACAAGATATGCGATGCGGCCTCGTTGTCAACGTTTGTTTGCAGCTGGACAAAGGCTTCA 534
Query 539 AAAGGGTACGCTGACACAG-TGAATCCTGAATTTCCGGGGCCCGATTTCTACCCTCCTGC 597
|||||||| || ||||||| || ||||||||||| |||| |||||||||||||||||||
Sbjct 535 AAAGGGTATGCGGACACAGTTG-ATCCTGAATTTGTGGGGGCCGATTTCTACCCTCCTGC 593
Query 598 TGATATTTCTATCGAGTTTCCTCCATTACTGGTACGCAAAACAAAATCTAAGACAAAAAG 657
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 594 TGATATTTCTATCGAGTTTCCTCCATTACTGGTACACGAAACAAAATCTAAGACAAAGAG 653
Query 658 GTTTGTCTTTGGTTCTTTGATGATTGAAAAGCTAAAAAACAGAGCTTCTAGTGGCAATCT 717
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 654 GTTTGTCTTTGGTTCTTTGATGATTGAAAAGCTTAAAAACAGAGCTTCAAGTGGCAAACG 713
Query 718 TG-AGCCACAAGTC-ACCCGTATTGAGTCCATCACGGCGCTGCTGTTAAGATGCATGACA 775
|| | ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGTA-CCACAAG-CTACCCGTATTGAGTCCATCACGGCGCTGCTGTTAAGATGCATGACA 771
Query 776 AAGGCAGGGCATTCAAAGGCGGGTAAGGT-AACAAAATTTGCAATAACACAGACCATGAA 834
|| ||||||||||||||| |||||||||| || | ||||||||||||||||||| ||| |
Sbjct 772 AAAGCAGGGCATTCAAAGTCGGGTAAGGTGAA-AGAATTTGCAATAACACAGACAATGGA 830
Query 835 CTTGCGAACTAGAGTTTCTTCCTCTTTCTTGCCGCACAAGGCAATTGGAAACTTCTTCTT 894
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 831 CTTGCGACCTAGAGTTTCTTCCTCTCTCTTGCCGCACAAGGCAATTGGAAACTTCTTCTT 890
Query 895 TTTACCATTACTTAAGGAAAGCTCAGAGAGTAAGATGGAAATCGAAGAAACTGTTTCTAA 954
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 891 TTTACCATTACTTAAGGAAAGCTCAGAGAGTAAGATGGAAATCGAAGAAACGGTGTCTAA 950
Query 955 GCTGCAGAAAACTAAAGAGGAGCTCAATCAGCTTATCAGAAACGATCCTGACGACGCAAA 1014
|||||||||||||||| ||||||| ||| ||||||||||||||||| | || ||||||||
Sbjct 951 GCTGCAGAAAACTAAACAGGAGCTGAATGAGCTTATCAGAAACGATTCGGAAGACGCAAA 1010
Query 1015 GAGTAGCGTTGAAGCCAAAGAGAGAATCGCAAGCGCGATGCTGAGTTCTTTGCACGAGGT 1074
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 1011 GAGTAGCGTTGAAGCCAAAGAGAGAATCGCAAGCGCGATGCTGAGTTCGTTGTGTGAGAT 1070
Query 1075 AAGTCCTGAGACCGAGACATATGTTGTGTCTAGTTGGTGCAGGATGTCGTTTTACGAGGC 1134
||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 1071 AAGTCCTGAGATGGAGACATATGCTGTGTCTAGCTGGTGCAGAATGTCGTTTTACGAGGC 1130
Query 1135 GGATTTTGGATGGGGAAAGCCGGTTTGGGTTGCCCCAGGTTCGGTTGGTAAGACCCAGGT 1194
| ||||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||
Sbjct 1131 GAATTTTGGATGGGGGAAGCCGGTTTGGGTTGCCCCAGATTCAGTTGATAAGACGCAGGT 1190
Query 1195 CGTGTTAATGGA-TGCAAAGGACAGTGAAGGGATTGAGGCATGGGTTACACTACCTGAAA 1253
|||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1191 CGTGTTAATGGACT-CAAAGGACAGTGAAGGGGTTGAGGCAAGGGTTACACTACCTGAAA 1249
Query 1254 CCGACATGGTTGAGTTTGAGCATGAT-GATGAGCTGCTCGCTTACGCTACTATAAGTCCT 1312
||||||||| | ||| |||||||||| | ||| || |||| |||||||||| |||||||
Sbjct 1250 CCGACATGGCTAAGTATGAGCATGATAG-TGAACTACTCGTTTACGCTACTCCAAGTCCT 1308
Query 1313 AGTGTCCTCATCTAGTAATAACTAATGTTTATCAGACAAGTCTAA 1357
||| ||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1309 AGTATCCTCATCTAGTAATAATTA-TGTTTATCAAACAAGTCTAA 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66816925395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5