BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489258
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24000.1 | Symbols: | Protein of unknown function (DUF819) ... 2189 0.0
> AT5G24000.1 | Symbols: | Protein of unknown function (DUF819)
| chr5:8110313-8112710 REVERSE LENGTH=1417
Length=1417
Score = 2189 bits (1185), Expect = 0.0
Identities = 1335/1408 (95%), Gaps = 7/1408 (0%)
Strand=Plus/Plus
Query 1 AAAAGTGGTATGGCTCTTCTATTCACAGTGGTTTCACCAAATCCACTGTCACCCACAATC 60
||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 10 AAAAGTGCAATGGCTCTTCTATTCACAGTGGTATCACCAAATCCACTGTCCCCCACAATC 69
Query 61 TCATCGCTCCACGTGTCTCCTTCCCGCCACCAC-T-T-ATCATCAATAATCATCCGCCGT 117
||||||||||||||||||||||||||||||||| | | ||||||||||| ||| ||||||
Sbjct 70 TCATCGCTCCACGTGTCTCCTTCCCGCCACCACTTATCATCATCAATAACCATACGCCGT 129
Query 118 AACAAATCGCCGCCGGGAACACTTC-CTCCACCGCGTCTTGTTTCATCTCGACGCCGGCG 176
|||||||||||||||| ||||| || |||||| ||||||||||||||||||||||||||
Sbjct 130 AACAAATCGCCGCCGGTAACAC-TCACTCCACATCGTCTTGTTTCATCTCGACGCCGGCG 188
Query 177 CGTGAAGGTCTTCTCACAACAACGATTCCCTCTAATCTCCCCCGACGATCACTGGTCTCA 236
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 189 CGTGAAGGTCTACTCACAACTACGATTCCCTCTAATCTCCCCAGACGATCACTGGTCACA 248
Query 237 ATGGGCCGCTCTCTTCGCCTCCGGAGCTTTCGGTGTCTGGTCGGAGAAGACGAAAATTGG 296
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 249 ATGGGCTGCTCTCTTCGCCGCCGGAGCTTTCGGTGTCTGGTCGGAGAAGACGAAAATTGG 308
Query 297 AAGCATGGTGAGTGGTGCGTTGACAAGTACGTTACTTGGGCTCGCCGCGAGCAATTTAGG 356
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 309 AAGTATGGTGAGTGGTGCGTTGACAAGTACGTTACTTGGGCTCGCCGCTAGCAATTTAAG 368
Query 357 GTTAATTCCGTTTGAAACGCCGTCGTATGACTTCTTCATGGAGTTTCTCTTGCCGCATAC 416
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 369 GTTAATTCCGTTTGAAACGCCGTCGTATGGCTTCTTCATGGAGTTTCTCTTGCCGCATAC 428
Query 417 GATTCCATTGTTGTTGTTTAGAGCTGATCTTCGTCGTATTATCCGATCTACTGGGTCATT 476
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 429 GATTCCATTGTTGTTGTTTAGAGCTGATCTCCGTCGTATTATCCGATCTACTGGATCATT 488
Query 477 GCTTCTTGCATTCTTAATTGGATCTGTTGCGACGATTGTTGGGACTGTGGTGGCTTTTAT 536
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 489 GCTTCTTGCATTCTTAATTGGATCTGTTGCGACGATTGTTGGAACAGTGGTGGCTTTTAT 548
Query 537 GTTGGTACCGATGAGATCGCTTGGTCCGGATAACTGGAAAATAGCAGCTGCTCTTATGGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GTTGGTACCGATGAGATCGCTTGGTCCGGATAACTGGAAAATAGCAGCTGCTCTTATGGG 608
Query 597 GAGTTACATTGGTGGATCCCTTAATTTTGTTGCGATATCGGAGGCTCTACAGATTTCTCC 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 609 GAGTTACATTGGTGGATCCCTTAATTTTGTTGCGATATCGGAGGCTCTACAGATATCTCC 668
Query 657 ATCTGTTGTAGCAGCGGGTGTAGCTGTAGACAATGTCATATGTGCTCTTTACTTCATGGT 716
||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 669 ATCTGTTATAGCAGCGGGTGTAGCTGTGGATAATGTCATATGTGCTCTTCACTTCATGGT 728
Query 717 TTTGTTTGCGTTGGCCTCAAAGATACCGCCTGAGACCACCTCAGCATCTTCCCCTGATGC 776
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 729 TTTGTTTGCGTTGGCCTCAAAGATACCCCCTGAGACCGCCTCAGCATCTTCCCCTGATGC 788
Query 777 TGACATGACTAAAGATGACGAGCTCAAGGACAAGAACAGAGTGGTTTCAACGTCGATTGC 836
|||||||||||| |||||| ||||| ||||||||||||||||||||||||| || |||||
Sbjct 789 TGACATGACTAAGGATGACAAGCTCGAGGACAAGAACAGAGTGGTTTCAACTTCAATTGC 848
Query 837 GCTATC-GATTTCCTTCCTGATATGCAAAGCTGCTGTTTCGATGACGACGCTATTTAATA 895
||||| | ||||||||||||||||||||||||| || || |||||||||||||||| |
Sbjct 849 ACTATCAG-TTTCCTTCCTGATATGCAAAGCTGCAATTACGTTGACGACGCTATTTAAGA 907
Query 896 TCCAAGGAGGCATGCTTCCTGCAGTAACAGCCATCACCATCGTCTTGGCAACTTCATTCC 955
| ||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 908 TACAAGGAGTTATGCTTCCTGCAGTAACAGCCATCACCATTGTCTTGGCAACATCCTTCC 967
Query 956 CTGATTTCTTCAATTCTCTGGCACCTTCTGCTGAAACCATCTCTCTCATTCTCATGCAGG 1015
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CTGATTTCTTCAACTCTCTGGCACCTTCTGCTGAAACCATCTCTCTCATTCTCATGCAGG 1027
Query 1016 TATTTTTCACAATTCTAGGAGCCACAGGGAGTGTATGGAATGTAATCAACACTGCCCCAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TATTTTTCACAATTCTAGGAGCCACAGGGAGTGTATGGAATGTAATCAACACTGCCCCAA 1087
Query 1076 GTATCTTCCTATTTGCTGCAATTCAAGTAATGGTTCATCTAGCAGTGACTTTGGTTCTAG 1135
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GTATCTTCTTATTTGCTGCTATTCAAGTAATGGTTCATCTAGCAGTGACTTTGGTTCTAG 1147
Query 1136 GAAAGCTATTCTGTATCGACATGAAGCTATTACTTCTTGCATCAAACGCTAACATCGGAG 1195
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1148 GAAAACTATTCTGTATCGACATGAAGCTATTACTTCTTGCATCAAATGCTAACATCGGAG 1207
Query 1196 GCCCAACAACTGCGTGTGCCATGGCAACCGCAAAAGGATGGACTTCTCTAGTCGTCCCCG 1255
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1208 GCCCAACCACTGCGTGTGCCATGGCAACCGCAAAAGGATGGACTTCTCTTGTCGTCCCCG 1267
Query 1256 GGATTCTCTCGGGCGTTTTTGGGGTCTCTATAGCAACTTTTCTCGGCATTGGATGTGGAG 1315
|||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1268 GGATTCTCTCTGGTGTTTTTGGGGTCTCCATAGCAACTTTTCTAGGCATTGGATGTGGAG 1327
Query 1316 TTTTTGTCCTTAAACGATTATAGATTTCTAAACAGTTGTAATGATTAGAAGATTCTGAAG 1375
|||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1328 TTTTTGTCCTCAAACGATTATAGATTTCTAAACAGTTCTAATGATTGGAGGATTCTGAAG 1387
Query 1376 CCACACTCCTTGTAAATTGTTAATTGTT 1403
| | ||| ||||||||||| ||||||||
Sbjct 1388 CTAGACTTCTTGTAAATTGCTAATTGTT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5