BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489259
Length=2740
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24010.1 | Symbols: | Protein kinase superfamily protein | ... 4324 0.0
> AT5G24010.1 | Symbols: | Protein kinase superfamily protein
| chr5:8113795-8116615 FORWARD LENGTH=2821
Length=2821
Score = 4324 bits (2341), Expect = 0.0
Identities = 2595/2719 (95%), Gaps = 12/2719 (0%)
Strand=Plus/Plus
Query 1 AATACAGAGAAGTGACAGCAAAAACGCACTTTCTAGTTTCTCCATCTCTTCTTCTCTTTA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3 AATACAGAGAAGTGACAGCAAAAACCCACTTTCTAGTTTCTCCATCTCTTCTTCTCTTTA 62
Query 61 ATATCATCAACCCAAAAACTTTCTCAAACCTTCCCC-AAAAAGCTTCACTCTAATGGCGT 119
|||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 63 ATATCATCAAACCAAAACCTTTCTCAAACCTTCCCCAAAAAAGCTTCACTCTAATGGCGT 122
Query 120 TTCCCAA-AAATCTAATCCAAACCcttctcttcttcttct---ctcttcttcatctttct 175
|| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 123 TT-CCAATAAATCTAACCCAAACCCTTCTCTTCTTCTTCTGCCCTCTTCTTCATCTCTCT 181
Query 176 ctcGCTGCTTTCACTCCAACTGATAATTACCTTGTCAATTCCGGTTCTAACACCAACACA 235
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 182 TTCGCTGCTTTCACTCCAACTGATAATTATCTCATCAATTCCGGTTCTAACACCAATACA 241
Query 236 TCTTTCTTCACAATCCGTTCTTTTCTCAGCGACTCTTCAAAACCTGGCTTGAGTTTTCTC 295
||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 242 TCTTTCTTCACAACCCGTTCTTTTCTCAGCGACTCTTCAGAACCTGGCTCGAGTTTTCTC 301
Query 296 TCCACCGATCGATCCATTTCGATTTCTGACCCGAACCCATCTCCAGATTCACCCGCTTTA 355
||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||
Sbjct 302 TCCACCGATCGATCCATCTCGATTTCTGACACGAACCCATCTCCAGATTCACCCGTTTTG 361
Query 356 TACAACACAGCTCGTGTTTTCCCCATCGGAGGATCATACAAATTCCAAGTCACTACCAAA 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 TACAACACAGCTCGTGTTTTCCCCGTCGGAGGATCATACAAATTCCAAGTCACTACCAAA 421
Query 416 GGCACTCACTTTATCCGTCTCCATTTCGCGCCTTTTAAAGCTTCAAGCTTTAACTTAAGG 475
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 422 GGCACTCACTTTATCCGTCTCCATTTCGCGCCTTTTAAAGCTTCGAGATTTAACTTAAGG 481
Query 476 TCTGCGAAATTTCGAGTTTTGATTAATGGGTTCTCTGTGATGAATAGTTTCAGTACTAGC 535
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 482 TCTGCTAAATTTCGAGTTTTGATTAATGGGTTCTCTGTGATTAACAGTTTCAGTACTAGC 541
Query 536 TCCGTCGTTGTTAAAGAATTCATACTCAAAATCGATGACCCTGTTTTAGAGATTTCGTTT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TCCGTCGTTGTTAAAGAATTCATACTCAAAATCGATGACCCTGTTTTAGAGATTTCGTTT 601
Query 596 TTGCCCTCTAAAGCTTCTGGGTTTGGGTTTGTTAATGCGGTTGAAGTGTTTTCAGCACCT 655
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTGCCCTTTAAAGCTTCTGGATTTGGGTTTGTTAATGCGGTTGAAGTGTTTTCAGCACCT 661
Query 656 AATAATTATATAATGGATCAAGGAACTAAGCTTGTAATCCCTAACTCTGCTCAAATCTTT 715
|| |||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 662 AAGGATTATATAATGGATCAAGGAACGAAGCTTGTGATTCCTAACTCTGCTCAAATCTTT 721
Query 716 AGTAACTTGTCATCTCAAGTTCTTGAGACTGTTCATAGAATCAACGTTGGTGGTTCGAAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGTAACTTGTCATCTCAAGTTCTTGAGACTGTTCATAGAATCAACGTTGGTGGTTCGAAA 781
Query 776 TTGACGCCGTTTAATGATACATTGTGGAGGACTTGGGTTGTTGATGACAACTATC-TCTT 834
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 782 TTGACGCCGTTTAATGATACGTTGTGGAGGACTTGGGTTGTTGATGACAACTATCTTC-T 840
Query 835 GTTGAGAGCTGCTGCGAGACGTGCTTGGACTACTCATTCTCCGAATTATCAAAACGGTGG 894
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTGAGAGCTGCTGCTAGACGTGCTTGGACTACTCATTCTCCGAATTATCAAAACGGTGG 900
Query 895 TGCCACGAGAGAGATTGCTCCGGATAATGTTTATATGACTGCTCAGGAGATGGATCGAGA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGCCACGAGAGAGATTGCTCCGGATAATGTTTATATGACTGCTCAGGAGATGGATCGAGA 960
Query 955 TAATCAGGAGTTGCAGGCAAGGTTTAACATTAGTTGGGGATTTCAGGTTGATGAGAAACG 1014
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 961 TAATCAGGAGTTGCAGGCAAGGTTTAACATTAGTTGGGGGTTTCAGGTTGATGAGAAACG 1020
Query 1015 AGTTCTTCATTTGGTTCGTTTGCATTTCTGCGATGTCGTTAGTTCGTCGCTTAATCAGCT 1074
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1021 AGTTCTTCATTTGGTTCGTTTGCATTTCTGCGATATCGTTAGTTCGTCGCTTAATCAGCT 1080
Query 1075 CTATTTCAATGTCTTTATCAATGAGTATCTTGCGTATAAAGATGTTGATCTTTCCACGCT 1134
||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1081 CTATTTCAATGTCTTTATCAATGAGTATCTTGCGTTTAAGGATGTTGATCTCTCCACGCT 1140
Query 1135 TACTTTCCATGTGCTTGCGTCTCCGTTGTACATTGATTTTGTTGCGGAATCTGATCGTTC 1194
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 TACTTTCCATGTGCTTGCGTCTCCGTTGTACATTGATTTTGTTGCGGAGTCTGATCGTTC 1200
Query 1195 TGGAATGTTGAGGATTAGTGTTGGACCGTCTGATCTTAGTAATCCGGCGAGAGTTAATGC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TGGAATGTTGAGGATTAGTGTTGGACCGTCTGATCTTAGTAATCCGGCGAGAGTTAATGC 1260
Query 1255 TCTATTGAATGGAGTTGAGATCATGAGGATTTTAAGCCCTGTGAGTTCTGAAGTGGTATC 1314
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1261 TCTATTGAATGGAGTTGAGATCATGAGGATTTTGAGCCCTGTGAGTTCTGAAGTGGTATC 1320
Query 1315 TGGAAAGAGGAATGTTGTCTGGATCGTGGTTGGCTCGGTTTTGGGAGGTTTTGTGTTCTT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TGGAAAGAGGAATGTTGTCTGGATCGTGGTTGGCTCGGTTTTGGGAGGTTTTGTGTTCTT 1380
Query 1375 GTCGCTGTTCTTCTTGTGCGTTTTGTGCTTGTGCAGGCGCAAGAACAACAAGATGAGGAG 1434
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1381 GTCGCTGTTCTTCTTGAGCGTTTTGTGCTTGTGCAGGCGCAAGAACAACAAGACGAGGAG 1440
Query 1435 TTCGGAAAGCACGGGGTGGACACCTTTGAGGAGGTTTAGAGGCAGTTCCAATAGTAGAAC 1494
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TTCAGAGAGCACGGGATGGACACCTTTGAGGAGGTTTAGAGGCAGTTCCAATAGTAGAAC 1500
Query 1495 AACTGAAAGAACTGTTAGTTCTAGTGGCTACCATACTCTGAGAATCTCTTTCGCGGAATT 1554
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1501 AACTGAAAGAACTGTTAGTTCTAGTGGCTACCATACTCTGAGAATCTCGTTCGCGGAGTT 1560
Query 1555 ACAATCCGGAACCAATAACTTTGATAAAAGTTTAGTAATCGGAGTAGGCGGATTTGGGAT 1614
|||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||
Sbjct 1561 ACAATCCGGAACCAATAACTTTGATAGAAGTTTAGTTATCGGAGTTGGCGGATTCGGGAT 1620
Query 1615 GGTCTTTAAAGGGTCTCTCAAAGACAACACCAAAGTAGCTGTAAAGAGAGGCTCGCCTGG 1674
||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1621 GGTTTTTAGAGGGTCTCTTAAAGACAACACCAAAGTAGCTGTGAAGAGAGGCTCTCCTGG 1680
Query 1675 TTCAAGACAGGGCTTACCGGAGTTTCTATCTGAGATAACCATCCTCTCTAAGATCCGTCA 1734
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1681 TTCAAGACAGGGCTTACCAGAGTTTCTCTCTGAGATAACCATTCTCTCTAAGATCCGTCA 1740
Query 1735 TCGCCATCTGGTTTCGCTGGTGGGGTATTGCGAAGAACAGTCTGAGATGATTCTTGTTTA 1794
||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TCGCCATCTAGTTTCACTTGTTGGGTATTGCGAAGAACAGTCTGAGATGATTCTTGTTTA 1800
Query 1795 TGAGTACATGGATAAAGGACCCCTCAAAAGTCACTTATACGGATCCACCAACCCGCCTTT 1854
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TGAGTACATGGATAAAGGACCACTCAAAAGTCACTTATACGGATCCACCAACCCGCCTTT 1860
Query 1855 GTCATGGAAGCAACGGCTTGAGGTCTGCATTGGTGCAGCCAGAGGACTTCATTACCTTCA 1914
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 ATCTTGGAAACAACGGCTTGAGGTCTGCATTGGTGCAGCCAGAGGACTTCATTACCTTCA 1920
Query 1915 CACCGGTTCTTCGCAAGGAATCATCCACCGGGATATCAAATCTACCAATATCTTACTAGA 1974
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1921 CACCGGTTCTTCGCAAGGAATCATCCACCGGGATATCAAATCCACCAATATCTTACTAGA 1980
Query 1975 TAACAACTATGTAGCCAAAGTTGCAGACTTTGGACTCTCAAGATCCGGTCCTTGTATTGA 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TAACAACTATGTAGCCAAAGTTGCAGACTTTGGACTCTCAAGATCCGGTCCTTGTATTGA 2040
Query 2035 TGAGACACATGTGAGCACCGGTGTAAAAGGAAGCTTCGGATATCTTGATCCTGAATACTT 2094
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2041 TGAGACACATGTGAGCACCGGTGTAAAAGGAAGCTTTGGATATCTTGATCCTGAATACTT 2100
Query 2095 CAGAAGACAACAGCTCACGGATAAATCCGATGTTTATTCATTTGGGGTTGTTCTTTTCGA 2154
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 2101 CAGAAGACAACAGCTCACGGATAAGTCCGATGTTTATTCATTTGGTGTTGTTCTTTTTGA 2160
Query 2155 AGTTCTTTGCGCTAGACCAGCTGTTGATCCATTGCTTGTTAGAGAGCAAGTCAATTTAGC 2214
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 2161 AGTTCTTTGCGCTAGACCCGCTGTTGATCCGTTGCTTGTTAGGGAGCAAGTAAATTTAGC 2220
Query 2215 AGAATGGGCAATCGAGTGGCAAAGGAAAGGGATGCTCGATCAAATCGTTGATCCGAAAAT 2274
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 2221 AGAATGGGCAATAGAGTGGCAAAGGAAAGGGATGCTTGATCAGATCGTTGATCCGAATAT 2280
Query 2275 CGCCGATGAAATCAAACCGTGCTCATTGAAGAAATTCGCTGAAACCGCCGAGAAATGCTG 2334
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2281 CGCAGATGAAATCAAACCGTGCTCGTTGAAGAAATTCGCTGAAACCGCAGAGAAATGCTG 2340
Query 2335 TGCGGATTACGGCGTAGATAGACCGACAATTGGCGATGTTCTGTGGAATTTAGAACATGT 2394
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2341 TGCGGATTACGGTGTAGATAGACCGACAATTGGCGATGTTCTATGGAACTTAGAACATGT 2400
Query 2395 ACTTCAGCTTCAAGAATCAGGACCATTGAACAATCCTGAAGAAGTTTATGGAGATGTTAC 2454
||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2401 GCTTCAGCTTCAAGAATCCGGACCATTGAACATTCCTGAAGAAGATTATGGAGATGTTAC 2460
Query 2455 CGACTCGGGAACAGCTCGGCAAGGTCCGTCTAGTGGCTCGAACACAGATAGGGACTATGG 2514
|||| || |||| ||||||||||||| ||||| ||||||||||| ||| || ||||||||
Sbjct 2461 CGACCCGAGAACGGCTCGGCAAGGTCTGTCTAATGGCTCGAACATAGAGAGAGACTATGG 2520
Query 2515 AGATGGAACTTCAGGCATAATCAGTAGCAGCCAAGTCTTCTCTCAGCTAATGACCAACGC 2574
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2521 AGATGGAACTTCAGGCATAATCAGTAGCACCCAAGTGTTCTCTCAGCTAATGACCAACGC 2580
Query 2575 TGGCAGATAAATAAAAGTCATTCCTGTATAGAGCAAG-AGT-ATTCATAGTCATAGAGGG 2632
||| |||||||| ||||||||| || ||||||||||| | | || |||||||||||||
Sbjct 2581 TGGGAGATAAATTAAAGTCATTGCTATATAGAGCAAGTATTTAT-CATAGTCATAGAGT- 2638
Query 2633 ACAATACATAAACCGGGAAACCAAAGCAGTGTACCGGCATCTTAGATTCTGTTTGTGTTT 2692
||||||| ||||||||||||||||||| ||||||||| |||| |||||| ||| ||||||
Sbjct 2639 ACAATACCTAAACCGGGAAACCAAAGCGGTGTACCGGTATCTCAGATTCGGTTCGTGTTT 2698
Query 2693 GGTATAATTTTGTTTGGTT 2711
|||||||||||||||||||
Sbjct 2699 GGTATAATTTTGTTTGGTT 2717
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 2711 TACATTATTTGGTTAAATATTAAACCGGTT 2740
||||||||||||||||||||||||||||||
Sbjct 2782 TACATTATTTGGTTAAATATTAAACCGGTT 2811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136102916359
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5