BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489261
Length=2362
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24030.1 | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118317... 3568 0.0
> AT5G24030.1 | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118317-8122784
REVERSE LENGTH=2389
Length=2389
Score = 3568 bits (1932), Expect = 0.0
Identities = 2234/2379 (94%), Gaps = 24/2379 (1%)
Strand=Plus/Plus
Query 1 TTTTTTCTATTTCCTCCTAATTCTTCTTCGCTTCTTTCCCAACCAAAAAACACCATTCTT 60
|||||||||||| |||||||||| |||||||||||||||| ||| ||||||| ||||||
Sbjct 18 TTTTTTCTATTTTCTCCTAATTCGTCTTCGCTTCTTTCCCTACC--AAAACACAATTCTT 75
Query 61 ATCTCTACAAGAATTAGAGAAGATCTATAGATTTCAAACA-C----C--ATTTCTACGGC 113
|||||||||||||| ||||||||||| ||||||| ||||| | | |||||||||||
Sbjct 76 ATCTCTACAAGAATAAGAGAAGATCTGTAGATTTTAAACACCATTTCTGATTTCTACGGC 135
Query 114 TGC-AAATTTCCAAATCGCCAG-GTTAGTGTTAGGGGAAATaaaaaaaTGGAGGAGAAAC 171
||| ||||||| |||||| ||| | | | | | | || |||||||||||||||||||
Sbjct 136 TGCAAAATTTCAAAATCGTCAGAGGAAAT-TAAAAAG-AAGAAAAAAATGGAGGAGAAAC 193
Query 172 CAAACTATGTGATACAAGTAGAAGAAGAGCTTCCAAGTTTACTGAGAAAAGCTACAACAG 231
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 194 CAAACTATGTGATACAAGTAGAAGAAGAGCTTCCAACTTTACTGAGAAAAGCCACAACAG 253
Query 232 AAGAAATGGTTGGGTTTGACAATTACAAAGAGAATGGTCATCCTTTTCCTCACTCAATCA 291
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AAGAAATGGTTGGCTTTGACAATTACAAAGAGAATGGTCATCCTTTTCCTCACTCAATCA 313
Query 292 GTCGTTTTCATCCTTCTCATGCCTCCACGACTACTTTGAATGGTCAAGAAGCATCAAGAT 351
||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 314 GTCGTTTTCATCCATCGCATGCCTCCACGACTACTTTGAATGGTCAAGAAACATCAAGAT 373
Query 352 CAATAGACACAATGGAAG--C-TCATCATAACTACAATGAGACACCACCATGGACTCATC 408
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 374 CAATAGACACAATGGAAGCTCATCATCATAACTACAATGAGACAACACCATGGACTCATC 433
Query 409 AAAGAAAACCATCAATTTCAATGCCAACTTCACCAAATGTTCTCATGATCTCCGACCCGA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AAAGAAAACCATCAATTTCAATGCCAACTTCACCAAATGTTCTCATGATCTCCGACCCGA 493
Query 469 CAACATCTTTGGCTTCCGAAAACAACAAGAACAGTGGGTCGACTGGGAAATCTGTCAAGT 528
||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 494 CAACATCTTTGTCTTCCGAAAACCACAAGAACAGTGGGTCGACTGGCAAATCCGTCAAGT 553
Query 529 TTCTCTCTCAGCCAATGACCAAAGTCTCATCTCTCTACATAGAAACCGGTAACGATGATA 588
||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 554 TTCTCTCTCAGCCGATGACCAAAGTCTCATCTCTCTACATAGAAAGCGGTAATGGTGATG 613
Query 589 ATGATCGTCGTCTTAGCCATGAT-a--atcatcatcatcgtcaacaacaacatcagaatg 645
|||||||||||| ||||||||| | |||||||||||| ||| | ||||||||||| ||
Sbjct 614 ATGATCGTCGTCAAAGCCATGATAATCATCATCATCATCTTCATCGACAACATCAGAGTG 673
Query 646 gtcatcatcaaaatcaaaatcCGGCGGCGAACAAGCTTAAAGACAACAGGTACAACTCGT 705
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 674 GTCATCATCAAAATCAAAATCAGGCTGCGAACAAGCTTAAAGACAACAGGTACAACTCGT 733
Query 706 TCAAGACTTGGTCGGGGAAACTCGAGAGACAATTCACAAGAAAACCAGCTTCTGTTGAAC 765
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 734 TCAAGACTTGGTCGGGGAAACTTGAGAGACAATTCACAAGAAAACCAGCTTCTGTTGAAC 793
Query 766 CGGAGGCACCAAACCGGAATAACCAAAATTTGAATACCAATGAAGCCATGCCTGTGGACC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CGGAGGCACCAAACCGGAATAACCAAAATTTGAATACCAATGAAGCCATGCCTGTGGACC 853
Query 826 GCTACTATGATGCCTTAGAAGGTCCTGAATTAGAGACTCTACAGCCTCAAGAAGAGATCG 885
| |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 854 GTTACTATGACGCCTTAGAAGGTCCTGAATTAGAGACCCTACGGCCTCAAGAAGAGATCG 913
Query 886 TTCTACCAAATGATAAAAAGTGGCCGTTTCTTCTCCGTTACCCGATCTCCACCTTCGGTA 945
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 914 TTCTACCAAATGATAAAAAGTGGCCGTTTCTTCTCCGTTACCCCATTTCCACCTTCGGTA 973
Query 946 TGTGCCTCGGAGTGAGCAGCCAAGCCATAATGTGGAAAACTCTAGCCACCGCGGAGCCAA 1005
||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 974 TGTGCCTAGGAGTGAGCAGCCAAGCCATAATGTGGAAAACCCTAGCCACTGCAGAGCCAA 1033
Query 1006 CCAAGTTTCTCCATGTACCCCTCTGGATCAACCAGGGTCTCTGGTTCATCTCAGTCGCTT 1065
||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1034 CCAAGTTCCTCCACGTACCCCTCTGGATCAACCAGGGTCTATGGTTCATTTCAGTGGCTT 1093
Query 1066 TGATCTTCACTATCGCCACCATCTACCTCCTCAAGATCATCCTTTAT-TTCGAAGCCGTA 1124
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1094 TGATCCTCACTATCGCCACCATCTACCTCCTCAAGATCATCCTTT-TCTTCGAAGCCGTA 1152
Query 1125 CGCCGCGAATACTACCATCCAATTAGAATCAACTTCTTTTTTGCTCCTTTCATTTCTTTA 1184
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1153 CGCCGCGAATACTACCATCCAATCAGAATCAACTTCTTCTTTGCTCCTTTCATTTCTTTA 1212
Query 1185 CTCTTCCTGGCCCTCGGTGTCCCACCTTCCATAATTACAGATTTGCCACATTTCCTTTGG 1244
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1213 CTCTTCCTTGCCCTCGGTGTCCCACCTTCCATAATTACAGATTTGCCGCATTTCCTTTGG 1272
Query 1245 TACCTCCTCATGTTTCCTTTCATCTGTCTTGAGCTTAAGATCTACGGTCAATGGATGTCC 1304
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1273 TACCTCCTCATGTTTCCATTCATCTGTCTTGAGCTTAAGATCTACGGTCAGTGGATGTCC 1332
Query 1305 GGTGGTCAACGCCGGCTCTCCCGAGTCGCCAACCCGACCAACCATCTCTCAGTCGTCGGG 1364
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1333 GGTGGTCAACGACGGCTCTCCCGGGTCGCCAACCCGACCAACCATCTCTCGGTCGTTGGG 1392
Query 1365 AACTTTGTCGGGGCCTTGCTTGGTGCGTCCATGGGGCTTAGAGAAGGCCCTATATTCTTC 1424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AACTTTGTTGGGGCCTTGCTTGGTGCGTCCATGGGGCTTAGAGAAGGCCCTATATTCTTC 1452
Query 1425 TACGCTGTTGGGATGGCTCACTACTTGGTTCTGTTTGTGACTCTCTACCAAAGGCTACCG 1484
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1453 TATGCTGTTGGGATGGCTCATTACTTGGTTCTGTTCGTGACTCTCTACCAAAGGCTACCG 1512
Query 1485 ACCAACGAGACTTTGCCTAAAGATCTTCACCCTGTATTCTTCCTCTTTGTCGCGGCTCCA 1544
||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 1513 ACCAACGAGACTTTGCCTAAAGATCTTCATCCTGTCTTCTTCCTCTTCGTTGCGGCTCCA 1572
Query 1545 AGTGTTGCTTCCATGGCTTGGGCTAAGGTCACTGGCTCCTTTGATTATGGCTCCAAAGTT 1604
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1573 AGTGTTGCTTCCATGGCTTGGGCTAAGGTCACTGGCTCCTTCGATTATGGCTCCAAAGTT 1632
Query 1605 TGTTACTTTATCGCCATTTTCCTCTATTTCTCATTGGCTGTTCGGATTAATTTCTTCCGG 1664
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1633 TGTTACTTTATCGCCATTTTCCTCTATTTCTCATTGGCTGTTCGGATCAATTTCTTCAGG 1692
Query 1665 GGAATCAAATTTTCGCTGTCTTGGTGGGCGTACACATTTCCGATGACCGGGGCTGCAATT 1724
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1693 GGAATCAAATTTTCGCTGTCCTGGTGGGCGTACACCTTTCCGATGACCGGAGCTGCAATT 1752
Query 1725 GCAACCATCAGATACGCAACAGTGGTTAGGAGCACTATGACTCAAATCATGTGTGTGGTC 1784
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1753 GCTACCATCAGGTACGCAACAGTGGTTAAGAGCACTATGACTCAAATCATGTGTGTGGTC 1812
Query 1785 CTCTGTGCCATTGCAACGTTGGTCGTATTCGCACTGCTTGTGACCACCATTATCCACGCC 1844
|| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1813 CTATGTGCCATTGCAACGTTAGTCGTGTTCGCACTGCTCGTGACCACCATTATCCACGCC 1872
Query 1845 TTTGTTCTCCGGGATCTTTTTCCCAATGACCTCGCCATAGCCATCAGCAACCGGCCGAGA 1904
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1873 TTTGTCCTCCGAGATCTTTTTCCCAATGACCTCGCCATAGCCATCAGCAACCGTCCGAGA 1932
Query 1905 CCCAAACAGAATAGCCATCACCGGTGGCTTGACCAATTGAGAAACGTAAGCTCAGAGAAC 1964
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1933 CCCAAACAGAATAGCCAACACCGGTGGCTTGACCAACTGAGAAACGTAAGCTCAGAGAAC 1992
Query 1965 ATCGAGAATTACTTGAAATTCACAGACTCCGACAGCACTCATAGTAATGATTTAGAAGCT 2024
|||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 1993 ATCGAGAACTACTTGAAATTCACAGACTCCGACAGCAGTCAGAGTAATGATGTAGAAGCT 2052
Query 2025 TGCAACGGCAAAACTCAAGAGAGTGATTCATCATAAATTGGAAAATCATTaaaaaaaaaT 2084
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 2053 TGCAACGGCAAAACTCAAGAGAGTGATTCATCATAAATTGGAGAATCACGAAAAAAGTTT 2112
Query 2085 TCATAACCCCTGGTACAGAGTCGTATCCGAAGTTTTGGTTTTTATTTGTTGTCAGTGTCT 2144
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2113 TCATAACCCCTAATACAGAGTCGTATCCGAAGTTTTGGTTTTGGTTTGTTGTCAGTGTCT 2172
Query 2145 CTGACACAAGTGAGGAACCTAGTAACGGTAAT-GTTGCTGTGGTTCTAATGAGCATGTGT 2203
||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||
Sbjct 2173 CTGACACAAGTGAGGAACCTAGTAACG-TAATTGTTGCTGTGGTTCTAATGATCATGTGT 2231
Query 2204 GTAAAAGTAGTAGTAAGCAAACGATAGGGGTTGTCTACAATGGTGAGCCAATCCAAACGA 2263
|||| | |||| |||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2232 TTAAA-GCAGTATTAAGTAAACGGGAGGGGTTGTCTACAATGGTGAACCAATCCAAACGA 2290
Query 2264 CCCAGTATCTCCTAAACCGGAACTGTTAACAGTTATCACAATACTTCAAAGAGCATGTAA 2323
||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2291 CCCAGTATCTCTTAAACCAGAACTGTTAGCAGTTATCATAATACTTCAAAGAGCATGTAT 2350
Query 2324 ACTTGTTTTGTTCCAATAAATAAAAAGTTTTGAGGGGTT 2362
|||||||||||||||||||||||||||||||||||||||
Sbjct 2351 ACTTGTTTTGTTCCAATAAATAAAAAGTTTTGAGGGGTT 2389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117268473120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5