BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489264
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24070.1 | Symbols: | Peroxidase superfamily protein | chr5... 1615 0.0
> AT5G24070.1 | Symbols: | Peroxidase superfamily protein | chr5:8134301-8135991
REVERSE LENGTH=1023
Length=1023
Score = 1615 bits (874), Expect = 0.0
Identities = 973/1022 (95%), Gaps = 2/1022 (0%)
Strand=Plus/Plus
Query 6 GCAGTTTGTGAAATTTTTCCCACTACTGGCCATCGTAATCATAAGCTTAGCCGGAACGGC 65
|||||||||||| |||||||||||| ||||| ||||| |||||||||||||||||| |||
Sbjct 3 GCAGTTTGTGAATTTTTTCCCACTATTGGCCCTCGTAGTCATAAGCTTAGCCGGAAAGGC 62
Query 66 GACGATAGAGGCTGCGACGGGATTGAACCCTCCGGTGAAGCTGGTTTGGCATTATTACAA 125
||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 63 TACGGTAGAGGCTGCGACGGGATTGAACCCTCCGGTGAAGCTTGTCTGGCATTATTACAA 122
Query 126 AGTTACTAACACTTGTGATGATGCAGAAACTTATATTAGATACCAAGTTGAAAAGTTTTA 185
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 123 ACTTACTAACACTTGTGATGATGCAGAGACTTATATTAGATACCAAGTTGAAAAGTTTTA 182
Query 186 TAAGAATGATAGTAGCATTGCCCCAAAGCTTCTTCGTCTCCTCTACTCCGATTGTATGGT 245
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 183 TAAGAATGATAGTAGCATTGCCCCAAAGCTGCTTCGTCTCCTCTACTCCGATTGTATGGT 242
Query 246 TAATGGATGTGATGCTTCGGTTCTTTTGCAAGGACCAAACTCGGAGAGGACAGCTCCACA 305
|||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 243 TAATGGATGTGATGGTTCGATTCTTTTGCAAGGACCAAACTCAGAGAGGACAGCTCCACA 302
Query 306 GAATCGAGGGCTTGGAGGTTTTGTGATAATCGATAAAATAAAGCAAGTTCTTGAATCACG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GAATCGAGGGCTTGGAGGTTTTGTGATAATCGATAAAATAAAGCAAGTTCTTGAATCACG 362
Query 366 CTGTCCTGGTGTTGTTTCTTGCGCTGATATCCTCAACCTTGCCACTAGAGATGCTGTTCA 425
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TTGTCCTGGTGTCGTTTCTTGCGCTGATATCCTCAACCTTGCCACTAGAGATGCTGTTCA 422
Query 426 CATGGCCGGTGCACCGTCTTATCCTGTGTTTACCGGGAGAAGGGATGGAGGGAGATTAAA 485
||||||||| ||||||||||||||||||||||| ||||||||||| || |||| ||||||
Sbjct 423 CATGGCCGGAGCACCGTCTTATCCTGTGTTTACGGGGAGAAGGGACGGTGGGACATTAAA 482
Query 486 TGCAGACGCCGTAGATCTGCCATCACCGTCCATCTCAGTCGATGAGTCATTGGCATACTT 545
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 483 TGCAGACGCCGTAGATCTGCCGTCACCGTCCATCTCAGTCGATGAGTCATTGGCATATTT 542
Query 546 CAAGTCCAAAGGTCTTGACGTTTTGGATATGACTACTCTTCTAGGAGCACATTCAATGGG 605
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 543 CAAGTCCAAAGGTCTTGACGTTTTGGATATGACTACTCTTCTAGGAGCACACTCAATGGG 602
Query 606 GAAGACACATTGCAGCTACATAGTGGACAGACTATACAACTTCAAGAACACTGGGAAACC 665
|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 603 GAAGACACATTGTAGCTACGTAGTGGACAGACTATACAACTTCAAGAACACAGGGAAACC 662
Query 666 AGATCCGACCATGAACTCAACATTGGTTTCACAACTTCGATATCTTTGTCCTCCAAGAAC 725
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 663 AGATCCGACCATGAACACGACATTGGTGTCACAACTTCGATATCTTTGTCCTCCAAGAAC 722
Query 726 ACAAAAGGGACAAACGGACCCACTCGTTTACCTAAACCCAGACTCAGGCTCGAGCAACAG 785
||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 723 ACAAAAGGGCCAAACCGATCCACTGGTTTACCTAAATCCAGACTCAGGCTCGAGCAACAG 782
Query 786 ATTCACCAGCTCCTACTACTCTCGTGTCTTGTCTCACAACGCTGTTTTGA-GGGTGGACC 844
|||||| ||||| ||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 783 ATTCACAAGCTCATACTACTCTCGTGTCTTGTCTCATAACGCTGTTTT-ACGGGTGGACC 841
Query 845 AAGAGTTGCTCAACAACGATGACTCAAAGGAGATCACGCAAGAGTTCGCTTCGGGTTTTG 904
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 842 AAGAGTTGCTCAACAACGATGACTCGAAGGAGATCACGCAAGAGTTTGCTTCCGGTTTTG 901
Query 905 AAGATTTCAGAAAGTCATTTGCTTTGGCAATGTCGAGGATGGGATCTATCAATGTTTTGA 964
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 902 AAGATTTCAGAAAGTCTTTTGCTTTGGCAATGTCGAGAATGGGATCTATCAATGTTTTGA 961
Query 965 CGGGAACAGCTGGAGAGATTCGGCGAGACTGCAGAGTTACCAACGCTAATTACGGGGCTT 1024
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 962 CGGGAACAGCTGGAGAGATTCGTCGAGACTGCAGAGTTACCAACGCTAATGACGGGGCCT 1021
Query 1025 AA 1026
||
Sbjct 1022 AA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5