BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489265
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24090.1 | Symbols: ATCHIA, CHIA | chitinase A | chr5:814369... 1572 0.0
> AT5G24090.1 | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143699-8145252
REVERSE LENGTH=1114
Length=1114
Score = 1572 bits (851), Expect = 0.0
Identities = 988/1052 (94%), Gaps = 17/1052 (2%)
Strand=Plus/Plus
Query 1 AACAAAAGTCATCTTTTACTTCTTTTATaaaaaaaaGAAGTTAAGCAATAACAAACAAAC 60
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AACAAAAGTCATATTTTACTTCTTTTAT-AAAAAAAGAAGTTAAGCAATAACAAACAAAC 59
Query 61 ACATAACCACAAAGATG-------A-C----A--AAAAACATGACTAACATTAATCTTCT 106
||||||||||||||| | | | | ||||||||||| ||||| | |||||
Sbjct 60 ACATAACCACAAAGAAGACAAAACATCTTTAACCAAAAACATGACCAACATGACTCTTCG 119
Query 107 CAAGCATGTTATATACCTTCTCTTCTTCATAAGCTGCTTTATTACCAAACCCTCCGATGC 166
|||||||||||||||| |||| |||||||||||||||| | ||| |||||||||||||||
Sbjct 120 CAAGCATGTTATATACTTTCTTTTCTTCATAAGCTGCTCTCTTAGCAAACCCTCCGATGC 179
Query 167 ATCCAGAGGTGGCATAGCCATCTATTGGGGCCAAAACGGCAACGAAGGTAATCTCTCGGC 226
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 180 ATCCAGAGGTGGCATAGCCATCTATTGGGGCCAAAACGGAAACGAAGGTAACCTCTCTGC 239
Query 227 CACGTGTGCGACCGGCCGGTATGCTTACGTCAACGTCGCCTTTCTTGTGAAATTCGGAAA 286
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CACGTGTGCCACCGGCCGGTATGCTTACGTCAACGTCGCCTTTCTTGTGAAATTCGGAAA 299
Query 287 TGGTCAAACACCGGAGCTCAACCTTGCCGGCCACTGCAACCCTGCGGCCAACACTTGCAC 346
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TGGCCAAACACCGGAGCTCAACCTTGCCGGCCACTGCAACCCTGCGGCGAACACTTGCAC 359
Query 347 CCATTTTGGCTCTCAGGTCAAAGATTGTCAGTCTCGTGGCATCAAGGTTATGTTGTCTCT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCATTTTGGCTCTCAGGTCAAAGATTGTCAGTCTCGTGGCATCAAGGTTATGTTGTCTCT 419
Query 407 CGGCGGCGGGATCGGAAACTACTCGATTGGGTCCAAGGAGGACGCAAAAGTTGTCGCTGA 466
|||||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 420 CGGCGGCGGGATTGGAAACTACTCGATTGGGTCGAGGGAGGACGCAAAAGTTATCGCTGA 479
Query 467 TTACCTGTGGAACAACTTCTTGGGAGGAAAATCATCATCACGTCCCTTAGGTGATGCTGT 526
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTATCTGTGGAACAACTTCTTGGGAGGAAAATCATCATCACGTCCCTTAGGTGATGCTGT 539
Query 527 TCTTGATGGTATCGATTTCAATATCGAGCTTGGCTCTCCTCAACACTGGGATGATCTCGC 586
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTAGATGGTATCGATTTCAATATCGAGCTTGGCTCTCCTCAACACTGGGATGATCTCGC 599
Query 587 CAGGTCTCTCTCAAAGCTTAGCCACAGAGGCAGAAAAGTATATTTAACAGGAGCTCCTCA 646
|||| ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 600 CAGGACTCTCTCAAAGTTTAGCCACAGAGGAAGAAAAATATATCTAACAGGAGCTCCTCA 659
Query 647 ATGTCCATTTCCAGACAGATTAATGGGAAATGCTCTCAACACTAGACGTTTTGACTATGT 706
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 660 ATGTCCATTTCCAGACAGATTAATGGGAAGTGCTCTCAACACTAAACGTTTTGACTATGT 719
Query 707 TTGGATCCAATTCTACAACAATCCACCGTGTTCATACACTTCAGGAAATACTCAAAACCT 766
|||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 720 TTGGATTCAATTCTACAATAATCCACCGTGTTCATACAGTTCAGGTAATACTCAAAACCT 779
Query 767 CTTTGATTCGTGGAACAAGTGGACCACTTCAATCACAGCCCAGAAAAT-CTTCTTGGGTC 825
||| ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 780 CTTCGATTCATGGAACAAGTGGACCACTTCAATCGCAGCCCA-AAAATTCTTCTTGGGTC 838
Query 826 TTCCGGCAGCTCCCGAAGCTTCCGGAAGTGGCTATATCCCGCCAGATGTACTGACTTCAC 885
| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 839 TACCGGCAGCTCCTGAAGCTGCCGGAAGTGGCTATATCCCACCAGATGTACTGACTTCAC 898
Query 886 AGATACTTCCGACTTTAAAGAAGTCTAGGAAGTATGGAGGTGTAATGCTTTGGTCTAAAT 945
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGATTCTTCCGACTTTAAAGAAGTCTAGGAAGTATGGAGGTGTAATGCTTTGGTCTAAAT 958
Query 946 TTTGGGATGATAAAAATGGATACAGTTCATCTATATTGGCTAGTGTGTGAAAAGAATCGT 1005
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTGGGATGATAAAAATGGATACAGTTCATCTATATTGGCTAGTGTGTGAAAAGAATCGT 1018
Query 1006 AATGACCATTCTATGTATATCAATTCTCTCGT 1037
||| ||||| ||||| |||||||||||||||
Sbjct 1019 TATGGCCATTGTATGTGTATCAATTCTCTCGT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5