BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489266
Length=2170
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24100.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2976 0.0
> AT5G24100.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:8148616-8151308 FORWARD LENGTH=2248
Length=2248
Score = 2976 bits (1611), Expect = 0.0
Identities = 1960/2124 (92%), Gaps = 41/2124 (2%)
Strand=Plus/Plus
Query 1 TAAACGTTTATTAGCGTTTTGACTTTCCTAAATAATAATCTTTTATG-------GCTTC- 52
|||||||||| ||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 33 TAAACGTTTACTAGCGTTTTGACTTTCCTAAACAATGATCTTTTATGTCTTCCTTCTTCA 92
Query 53 ----C-ATTGCCTATAGTTTTTGCAGACCGAActtctttgttctttctctcttctctgct 107
| ||||||||||| ||||||||||| |||||||||| ||||||| |||||||| ||
Sbjct 93 ATAGCTATTGCCTATAG-TTTTGCAGACCAAACTTCTTTGGTCTTTCTATCTTCTCTTCT 151
Query 108 ttttaaattctcattattatctcttacattctctcttcCCAATTCAAACTAAAGTCTC-G 166
|| ||||||||||| | ||||||||||||||||||||| ||||| |||||||||| || |
Sbjct 152 TTCTAAATTCTCATAACTATCTCTTACATTCTCTCTTCTCAATTTAAACTAAAGTTTCAG 211
Query 167 CCAGTCC-TTAATGAGATTCCGCATTTGAACTATATAAAAGTCTCCATCACATAACCAGA 225
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CCAGTCCTTTAATGAGATTCCGCATTTGAACTATATAAAAGTCTCCATCACATAACCAGA 271
Query 226 GAAATTATTAAGAAGATGAGT--A-GAAGAT-TTTCCATCTTCTATGTTGTTTTACTTCT 281
||||||| ||||||||||||| | |||||| ||| |||||||||| |||||||| ||||
Sbjct 272 GAAATTAGTAAGAAGATGAGTAGAGGAAGATCTTT-CATCTTCTATTTTGTTTTATTTCT 330
Query 282 CTTCTTTGGATCAACTTCTCTGTTTTCTCGGGTCACCGGTGACCTAGCCGGCGACAGACA 341
||||||||||||| | |||||| ||||| |||||||||||| |||||||| ||||||||
Sbjct 331 CTTCTTTGGATCATCGGCTCTGTATTCTCAGGTCACCGGTGATCTAGCCGGTGACAGACA 390
Query 342 AGCTCTTCTCGACTTCCGCAACAACATCGTTCACCCACGGTCTCTAGCGTGGAACGCAAG 401
||| |||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 391 AGCCCTTCTCGATTTCCTCAACAACATCATTCACCCACGGTCTCTAGCGTGGAACACAAG 450
Query 402 CAGCCCGGTATGCACCACGTGGCCAGGGGTCACATGCGACAGAGACGGCACACGTGTCAC 461
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 451 CAGCCCGGTATGCACCACGTGGCCAGGGGTCACATGCGACATAGACGGCACACGTGTCAC 510
Query 462 TGCCCTTCACTTGCCCGGAGCAAGTCTTCTAGGAGTGATCCCGCC-GCGAACTATCAGCC 520
|||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||
Sbjct 511 TGCCCTTCACTTGCCCGGAGCAAGTCTTCTAGGAGTGATCCCACCTG-GTACTATCAGCC 569
Query 521 GTCTATCGGAGCTTCAGATCCTCAGTCTCCGATCCAACGGCCTACGAGGACCGTTCCCAA 580
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 570 GTCTATCGGAGCTTCAGATCCTCAGTCTTCGATCCAACGGCCTACGAGGGCCGTTCCCAA 629
Query 581 TTGATTTCTTGCAGCTTAAGAAACTCAAAGCAATTAGTCTCAGCAACAACAGATTCTCTG 640
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 630 TTGATTTCTTGCAGCTTAAGAAACTCAAAGCAATTAGTCTCGGGAACAACAGATTCTCTG 689
Query 641 GCCCATTACCGTCCGATTACGCCACGTGGACGAATCTCACCGTTCTTGATCTGTCCGGTA 700
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 690 GCCCATTACCATCCGATTACGCCACGTGGACGAATCTCACTGTTCTTGATCTGTACAGTA 749
Query 701 ACAGGTTTAACGGTAGCATTCCCGCGGGATTTGCTAATCTTACCGGACTCGTCTCACTTA 760
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 750 ACCGGTTTAACGGTAGTATTCCCGCGGGATTTGCTAATCTTACCGGACTCGTCTCGCTTA 809
Query 761 ACCTAGCTAAAAACTCATTTTCCGGTGAGATTCCGGATCTTAATCTCCCCGGTCTACACA 820
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 810 ACCTAGCTAAAAACTCATTCTCCGGTGAGATTCCGGATCTTAATCTCCCCGGTCTACGCA 869
Query 821 GACTTAACTTTTCCAACAACAATCTCACCGGATCAATCCCAAATTCTCTGAAAAGATTCG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GACTTAACTTTTCCAACAACAATCTCACCGGATCAATCCCAAATTCTCTGAAAAGATTCG 929
Query 881 GGAACTCGGCTTTTTCCGGCAACAACTTAGT-TTACGAAAATGCCCCTCCTCCGGTGATT 939
||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 930 GGAACTCGGCTTTTTCCGGCAACAACTTAGTCTT-CGAAAATGCCCCTCCTCCGGCGGTA 988
Query 940 CCTAAAGAGAAAGAG-AAAGaaaaaaaGGGGATCTATATATCCGAACCCGCGATTCTCGG 998
| | |||||| ||| | ||||| || |||||||| || |||||||||||||||||
Sbjct 989 GTTTCATTCAAAGAGCAAA-AGAAAAACGGCATCTATATCTCTGAACCCGCGATTCTCGG 1047
Query 999 GATAGCGATTAGCGTTTGCTTCGTGATATTCTTTGTAATCGCGGTTCTGATAATCGTTTG 1058
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1048 GATAGCGATTAGCGTTTGCTTCGTGATATTCTTTGTAATCGCGGTTGTGATAATCGTTTG 1107
Query 1059 CTATGTTAAAagacagaagaaacgagagacagagacagaaccaaaaccagagaagttgaa 1118
|||||| ||||| ||| || || || |||||||||||||||||||||| ||||||||
Sbjct 1108 CTATGTGAAAAGGCAG-AG----GA-AGTCAGAGACAGAACCAAAACCAGATAAGTTGAA 1161
Query 1119 accagcgcagaagaTGCCAAGTGAGAAGGAAGTTTCTAAATTAGGAAAAGAGCAGAATAT 1178
|| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1162 ACTAGCTAAGAAGATGCCAAGTGAGAAGGAAGTTTCTAAATTAGGAAAAGAGAAGAATAT 1221
Query 1179 AGAAGACATGGAGGATAAGAGCGAAATTAACAAAGTAATGTTTTTTGAAGGAAGCAATCT 1238
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1222 TGAAGACATGGAGGATAAGAGCGAAATTAACAAAGTAATGTTCTTTGAAGGAAGTAATCT 1281
Query 1239 AGCTTTTAACTTGGAAGACCTT-TTGATAGCTTCTGCAGAGTTTCTAGGGAAGGGCACTT 1297
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1282 GGCTTTTAACTTGGAAGA-CTTGTTGATAGCTTCTGCAGAGTTTCTAGGGAAGGGCGTTT 1340
Query 1298 TCGGGATGACGTATAAGGCGGTTCTAGAAGATTCCAAGGTCATCGCGGTTAAGAGGTTGA 1357
| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1341 TTGGGATGACGTATAAGGCGGTTCTAGAAGATTCCAAGGTTATCGCTGTTAAGCGGTTGA 1400
Query 1358 AGGACATAGTAGTGTCCCGGAAGGATTTTAAACATCAAATGGAGATTGTAGGAAACATTA 1417
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 AAGACATAGTAGTGTCCCGGAAGGATTTTAAACATCAAATGGAGATTGTAGGAAACATTA 1460
Query 1418 AGCACGAGAACGTTGCTCCCTTAAGGGCTTACGTGTGTTCCAAGGAAGAGAAGCTTATGG 1477
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1461 AGCACGAGAACGTTGCTCCCTTAAGAGCTTACGTGTGTTCCAAGGAAGAAAAGCTTATGG 1520
Query 1478 TGTATGATTACT-ACTCTGATGGCAGTCTTTCTCTTCGTCTTCATGGCAAGAACACCGAC 1536
|||||||||| | ||||| | |||||||| |||||||||||||||||||||||| | |||
Sbjct 1521 TGTATGATTA-TGACTCTAACGGCAGTCTCTCTCTTCGTCTTCATGGCAAGAACGCAGAC 1579
Query 1537 GAGGGCCATGTCCCGTTGAACTGGGAAACACGATTGAGATTCATGATCGGAGTAGCAAAA 1596
||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1580 GAGGGTCACGTCCCGTTGAACTGGGAGACGCGATTGAGATTCATGATCGGAGTAGCAAAA 1639
Query 1597 GGATTAGGTCACTTACACATACAGAAGCTCGCACATGGAAACATCAAATCTTCTAACGTC 1656
|||||||||||| |||| | ||| || |||||||||||||||||||||||||||||||||
Sbjct 1640 GGATTAGGTCACATACATACACAAAACCTCGCACATGGAAACATCAAATCTTCTAACGTC 1699
Query 1657 TTCATGAACTCGGAAGGATATGGATGTATATCGGAAGCCGGTTTACCTCTGTTAACCAAC 1716
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1700 TTCATGAACTCGGAAGGATATGGGTGTATATCGGAAGCCGGTTTACCTCTGTTAACCAAC 1759
Query 1717 CCGGTTGTGAGGGCAGATTCATCAGCCAGATCAATACTACGTTACCGTGC-CTCAGAAGT 1775
|||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1760 CCGGTTGTGAGGGCAGATTCATCAGCCAGATCGGTACTACGTTACCGTGCGC-CAGAAGT 1818
Query 1776 AACCGACACAAGGAGATCTACACCGGAATCAGACGTATACAGTTTTGGAATCTTGATGTT 1835
||||||||| ||||||||||| || ||||||||| |||||||||||||||| |||||| |
Sbjct 1819 AACCGACACGAGGAGATCTACGCCAGAATCAGACATATACAGTTTTGGAATATTGATGCT 1878
Query 1836 GGAGACTCTAACCGGAAGATCGAGTT-TGGATGATAGAAAGGAAGGGATAGATCTGGTGG 1894
||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 1879 GGAGACTCTAACCGGAAGATCGA-TTATGGATGATAGAAAGGAAGGGATAGATCTAGTGG 1937
Query 1895 TATGGGTTAATGAAGTTATTGCAAAACAATGGACAGGTGAAGTGTTTGATTTGGAGCTTG 1954
||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1938 TATGGGTGAATGACGTTATTTCAAAACAATGGACAGGTGAAGTGTTTGATTTGGAGCTTG 1997
Query 1955 TGAAGACTCCTAACATTGAATCAAAGTTACTTCAGATGTTGCAGTTAGGGACAAGTTGTG 2014
|||| ||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 1998 TGAAAACTCCTAACGTTGAAGCAAAGTTGCTTCAGATGTTGCAGTTAGGAACAAGTTGTA 2057
Query 2015 CGGCTAGGGTTCCGGCGAAGAGACCAGAGATGGTGAAAGTGATTGAGACTTTGGAGGAGA 2074
|||||| ||||||||| |||||||| || |||||||||||| ||||||||||||| ||||
Sbjct 2058 CGGCTATGGTTCCGGCAAAGAGACCGGATATGGTGAAAGTGGTTGAGACTTTGGAAGAGA 2117
Query 2075 TTGAGAGGGACTGATTAATACATT 2098
||||||| |||||||||||| |||
Sbjct 2118 TTGAGAGAGACTGATTAATAAATT 2141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107629968480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5