BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489269
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | ch... 2809 0.0
> AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E |
chr5:8157551-8160229 REVERSE LENGTH=1904
Length=1904
Score = 2809 bits (1521), Expect = 0.0
Identities = 1754/1865 (94%), Gaps = 21/1865 (1%)
Strand=Plus/Plus
Query 1 CACAAGTGAGCTAGCTTTTCGAAAGATTCAATTTTTCAGCCTT-AGATTGTGATGGGAGT 59
|||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 56 CACAAGTGAGCTAGCTTTGAGAAAGATTCAATTTTTGAGCCTTAAGATTGTGATGGGAGT 115
Query 60 TGTGTTTATTTCAAGTTCAGCTGCAAGATCTCCGCTTGGGTTAAGCAGCGATCTTTTGAC 119
||||| ||||||||||||||||||||||||||| || ||||| ||| ||||||||||||
Sbjct 116 TGTGTCTATTTCAAGTTCAGCTGCAAGATCTCCACTCGGGTTGGGCAACGATCTTTTGAC 175
Query 120 ACATCGGTCTTCGCTTAAGAAGCCATCCATTGTTGCGTTTAAAGCCGATGATTCGAGCAA 179
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 176 ACATCGGTCTTCACTTAAAAAGCCATCCATTGTTGCTTTTAAAGCCGATGATTCCAGCAA 235
Query 180 TTCAGCTATGATCATTCCTCCTCGAGAACAAGTTTTGATTCCTGCCGAAAAGCATAATGA 239
||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 236 TTCAGCTTTGATCATTCCTCCTCGTGAGCAAGTTTTGATTCCTGCTGAAAAGCATAATGA 295
Query 240 GAAGAAGAGAGTAGTAACGAGGAGGAAGCCGTGTAAAACTCCGAAAAAACCGAGTTCTTT 299
||||||||||| |||||||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct 296 GAAGAAGAGAGAAGTAACGAGGAGAAAGCCTTGTAAAACCCCGAAAAAACCGCTTTCCTT 355
Query 300 GGAACACAATTCGGCTCCTTCGTGTTCATTAGGAGTTGATTACTATGAAGCTGCTGCTAG 359
|||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||| ||
Sbjct 356 GGAACATAATTCGGCTCCTTCGTGTTCGTTAGGAGTAGATTACAATGAAGCTGCTGCAAG 415
Query 360 ACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAAGAGGATGTTGA 419
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 416 ACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAGGATGATGTTGA 475
Query 420 AGATGGCGGTTCCAAAACGAAAGTTTCACCGAGGAGAAAAAGGAAACAGAGTGGTGAGGA 479
||||||||| || ||| | |||||||||| |||||||||||||||| | |||||||||||
Sbjct 476 AGATGGCGGCTCTAAAGCCAAAGTTTCACGGAGGAGAAAAAGGAAAGAAAGTGGTGAGGA 535
Query 480 GAAGAAAGTTGTTGTGAGGAATAATGTGAAGAAGGAAAAGCGTTTGAGTCTTGATAAACG 539
||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 536 GAAGAAAGTGGTTGTGAGGAATAATGTGAAGAAGGAAAAACGTATGAGTCTTGATAAACG 595
Query 540 GATCGCTTTGAAGAGAAACGTTCAGGACAAACCAGTTGTTGTTTCTGCTGAGAAGAAAGT 599
||| |||||||||||||||||||| || |||||||| |||| ||||| ||| ||||||||
Sbjct 596 GATTGCTTTGAAGAGAAACGTTCAAGAGAAACCAGTCGTTGCTTCTGTTGATAAGAAAGT 655
Query 600 AACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTC 715
Query 660 TAATGATATTGTGAGCTTGGACTGGaaaaaaaTGAAGATACCTCCTGTTCTTTCTTCCAC 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 716 TAATGATATAGTGAGCTTGGACTGGAAAAAAATGAAGATACCTCCTGTTCTTTCTTCTAC 775
Query 720 TGAACATGCTTGGTTGTTTAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTAAAAGA 779
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 TGAACATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTGAAAGA 835
Query 780 TGAATTGCATAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGAGGAGATCAA 839
|| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 836 TGTATTGCAAAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGGGGAGATCAA 895
Query 840 TATGACCGCAGGTGAAGTAAAAAAGAAGATCGAAATAGGTAGAGCTGCAAGAAACAAACT 899
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 TATGACTGCGGGTGAAGTAAAAAAGAAAATCGAAATAGGTAGAGCTGCAAGAAACAAACT 955
Query 900 TATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATATTTTCATGATTTTAC 959
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 956 TATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTAC 1015
Query 960 CAACGGACCGAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAAT 1019
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAAT 1075
Query 1020 TGACCGCTTTGAGCCAAAAAGGAAGTTCCGTCTTTCGACTTATGGTTTGTTTTGGATTAG 1079
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1076 TGACCGCTTTGAGCCGAAAAGGAAGTTTCGTCTTTCGACTTATGGTTTGTTTTGGATTAG 1135
Query 1080 ACATGCCATCATAAGGTCAATGACAACTTCAAATTTCACTCGTGTCCCATTTGGACTTGA 1139
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1136 ACATGCCATCATACGGTCAATGACAACTTCAAACTTCACTCGTGTCCCATTTGGACTTGA 1195
Query 1140 ATCGGTTAGAGTGGAGAT-TTTCAAAACAAAGACTGAGCTATTGTTTGAGCTGGGAAGAC 1198
|||||||||||||||||| | | ||| ||||||||||||||| ||||||| |||||||||
Sbjct 1196 ATCGGTTAGAGTGGAGATATAT-AAAGCAAAGACTGAGCTATGGTTTGAGATGGGAAGAC 1254
Query 1199 TTCCAACCGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAG 1258
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CTCCAACGGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAG 1314
Query 1259 TATTGAGGGCTGCAAAACCCGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAG 1318
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TATTGAGGGCTGCAAAACCGGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAG 1374
Query 1319 AATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTG 1434
Query 1379 CTCTTCTCAGGCTCGCTCTCGACGACGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGG 1438
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1435 CTCTTCTCAGGCTCGCTCTCGACGATGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGG 1494
Query 1439 TTATTCGACAGAGATACGGTCTTGATGGGAAAGGCGACAGGACTCTAGGAGAGATAGCTG 1498
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1495 TTATTCGACAGAGGTACGGTCTTGATGGAAAAGGCGACAGGACTCTAGGAGAGATAGCTG 1554
Query 1499 GAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGC 1614
Query 1559 TTAAGCATCAGGCTC-GAGTTGATTACCTTCGTCAATACATCGTCTGAAACCAAACCGAG 1617
||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1615 TTAAGCATCAGGC-CAGAGTTGATTACCTTCGTCAATACATCGTCTAAAACCAAACCGAA 1673
Query 1618 CCGAATTGAGC-GCCTCACTCAAGCATTTGTGCATACTTGGTATGATTTCTTGAATTTAC 1676
||||| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1674 CCGAACTGAGCCGCCTCACTCAACCATTTGTGCATACTTGGTATGATTTCCCGACTTTAC 1733
Query 1677 GAGATACTTCAAACCCTCTTATAACCGTTGTATAGTTGTGTATGTAAGTAATATCAGAGT 1736
||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1734 GAGATACTTCACACCCTCTTATAACCGTTGTATAGTTGTGTATGTAA-TAG---CGGAGT 1789
Query 1737 TACTTATAGCTGCGTTAAATCGAGCAGTGAATCAAAATCGTTGTATTATATCATTACTAT 1796
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1790 TACTTATAGCTGCGTTAAATCGATCAGTGAATCGCAATCGTTGTATTATATCATTA---- 1845
Query 1797 ACAGTCTATACTCATACTGAAAAGTTATACATGTAAAGTTTGAGACATTGT-ATGCATTA 1855
|| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1846 ---GT--ATACTCATACTGAAAAGTTATACATGTAAAGTTTGAGATAT-GTTATGCATTA 1899
Query 1856 TTTTC 1860
| |||
Sbjct 1900 TCTTC 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5