BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489270
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1722 0.0
> AT5G24130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl,
flower; EXPRESSED DURING: 4 anthesis, petal differentiation
and expansion stage; Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink). | chr5:8162213-8164066 FORWARD LENGTH=1226
Length=1226
Score = 1722 bits (932), Expect = 0.0
Identities = 1074/1143 (94%), Gaps = 8/1143 (1%)
Strand=Plus/Plus
Query 1 CAGTCTCTCTCTAGACACATAATCTT-CAATCAAATGGTGAAACTCGCGACGGCGCGTGA 59
||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 CAGTCTCTCTCTAAACGCATAATCTTACAATAAAATGGTGAAACTCGCGACGGCGCGTGA 60
Query 60 GATTAGAACGTACGGCCCTCGGCTAGGGAGGAGCAGAGCCGAGTACATCAACGCAGGTCT 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GATTAGAACGTACGGCCCTCGGCTTGGGAGGAGCAGAGCCGAGTACATCAACGCAGGTCT 120
Query 120 ATACTTGTTTGCAACCGTAGCGCTCATCGGCGGTTTCACGGCGACAGGATTCTCATGGGA 179
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ATACTTGTTTGCAACCGTGGTGCTCATCGGCGGTTTCACAGCGACAGGATTCTCATGGGA 180
Query 180 ACCAAGATCCGGCCTCGTCCTTATTCTCCTAGCTCTCGTTCTTATAACTGCCGTGAATGT 239
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 181 ACCAAGATCCGGCCTCGTCCTTATTCTCTTAGCTCTCGTTCTTATAACCGCCGTGAATGT 240
Query 240 TCATGATCTCGTGGCTCATCTAGCCGGAATCGATTACCGGTTAAGGTTAATGGAGTATGA 299
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TCATGATCTTGTGGCTCATCTAGCTGGAATCGATTACCGGTTAAGGTTAATGGAGTATGA 300
Query 300 TTTGCAACTGGGGCTTGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGt 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGCAACTGGGGCTAGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGT 360
Query 360 ttttttCTTGGGAATCTTTTTCGTCTTCCATCAGGCTGAGACAAAACGTGGATACAGTGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTTTCTTGGGAATCTTTTTCGTCTTCCATCAGGCTGAGACAAAACGTGGATACAGTGG 420
Query 420 AAGAGAGCATCATGCATTAAACTTGCTTATTGCGGGTCCGTTGCTTTGGGTGATAGGATC 479
||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||
Sbjct 421 AAGAGAGCATCATGCATTAAACTTGCTGATAGCGGGTCCGTTACTTTGGTTGATAGGATC 480
Query 480 GATTCACAACTCATGCCAAATCTACCAGAGAGCAGACAGTCATGTCCAAATTCTACAGCA 539
||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||
Sbjct 481 GATTCACAACTCATGCCAAATCTACGAGAGAGCGGATAGTCATGTTCAAATTCTACAGCA 540
Query 540 GTGTGTTCACATTCCTTTCTTGGTTGGATCTCTTCTATTCTTGGTTTCGGCAGTTCTCAA 599
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 GTGTGTTTACATTCCTTTCTTGGTTGGATCCCTTCTATTCTTGGTTTCCGCAGTTCTCAA 600
Query 600 TAGCCTCGACCA-ATCCGGGTCATCTCACAGTGGCTTGAAGCTTCTTGGGGAAAGATGGG 658
|||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 TAGCCTCGAC-ATATCCGGGTCATCTCGTAGTGGATTGAAGCTTCTTGGGGAAAGATGGA 659
Query 659 TTTGGCTTGGGATTGCCGGGGCTATATGTTTGTTTGTGGGAGGATTGATGAACGTTGTTA 718
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 TTTGGCTTGGGATTTCCGGGGCTATATGTTTGTTTGTGGGAGGATTGCTGAACGTTGTTA 719
Query 719 AGGTTTTTAACTTCGTTCAGATCACTGGGCTACGCCTCGAGAAACTACGGGGCGGAGCTC 778
|||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 720 AGGTTTTTAACTTCGTCCAGATCTCTGGGCTCCGCCTCGAGAAACTACGGGGTGGAGCTC 779
Query 779 AAGACCGGCTTCTTGAAGGGAGAGAAGGATATCTCCCTCTTGTTGCTGAAGAAGAAAGAA 838
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGACCGACTTCTTGAAGGGAGAGAAGGATATCTCCCTCTTGTTGCTGAAGAAGAAAGAA 839
Query 839 TAAGGAAAATGGAAGCTGA-C--GAAGCTTCTAGTAGAACCAAACCCCGTGCCCACTTAA 895
||||||||||||||||||| | ||||||||||||||| |||||||||| || ||| ||
Sbjct 840 TAAGGAAAATGGAAGCTGATCACGAAGCTTCTAGTAGAGCCAAACCCCGGGCACACACAA 899
Query 896 CCTCCAAAGCTGGAGCGGGAGCTACAGAGACCGTGGTAGTATCATCTCCGACACCATACA 955
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 CCTCCAAAGCCGGAGAGGGAGCTACAGAGACCGTGGTGGTATCATCTCCGACACCATACA 959
Query 956 AGGATGTTCTCGTTGGACAGAGCTGAGGAAGATTATTCATGTTTAAATGTTGTTTTGTAC 1015
||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 960 AGGATGTTCTCGTTGGACAGATCTGAGGAAGATTAGTCATGTTTAAATGTTCTTTTGTAC 1019
Query 1016 TCTATATTCGTTTTTATCTACGAAGACAACAGATTTTGCCGTTCACCACAAGCTATG--A 1073
|| ||||| ||||||| || || |||| ||| ||||||||||||| || | | |||| |
Sbjct 1020 TCCATATTTGTTTTTAGCTGCGGAGACCACATATTTTGCCGTTCAACATATGTTATGTGA 1079
Query 1074 TTCGTTTCCTTGTTGATCAGCCTTTATGAATATTGAAATATGTTACAATACATCAAGACT 1133
||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 TTCGTTTCCTTTTTGGTCAGTCTTTATGAATATTGAAATAGGTTACAATACATCAAGACT 1139
Query 1134 TTA 1136
|||
Sbjct 1140 TTA 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5