BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489276

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   695    0.0  


> AT5G24165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G23885.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:8188560-8189276 FORWARD LENGTH=479
Length=479

 Score =  695 bits (376),  Expect = 0.0
 Identities = 437/466 (94%), Gaps = 6/466 (1%)
 Strand=Plus/Plus

Query  1    AGAAAGAAAACAAAGCAATTAATTCAAGAATCCA-AGGAAGCTGAAGATGAAG-AGAATT  58
            |||||||||||| |||||||| || ||||||||| ||||||||||||||| || ||||||
Sbjct  16   AGAAAGAAAACAGAGCAATTACTTGAAGAATCCATAGGAAGCTGAAGATG-AGAAGAATT  74

Query  59   CCTCGTATCAAATTTCCTCAAAGACATTCTATTTCATCTGGTTCTGGTCCGGCGACGGGA  118
            |||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||
Sbjct  75   CCTCGTATCAAATTTCCTCAGAGACATTCTATCTCATCTGGTTCTGGACCGGCGCCGGGA  134

Query  119  TCTGTTGCCGGCGGTAAGAAAAATGTGACGGCGAGTTCAGATGTTCCGGCGGCTCCGAAG  178
            |||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  135  TCTGTTTCCGGCGTTAAGAAAAATGTGACGGCGAGTTCTGATGTTCCGGCAGCTCCGAAG  194

Query  179  AACACTGCTGATGGAGGAAAAGCATCTCTGCAGCCGAAACGTACACCTGTCTCCGACAAA  238
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  195  AACACTGCTGATGGAGGGAAAGCATCTCTCCAGCCGAAACGTACACCTGTCTCCGACAAA  254

Query  239  GAAATCGAATCTATTATGTTGGGTGGTTGCATTTGACATTTGGG-AGTTACGAAGATTTG  297
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  255  GAAATCGAATCTATTATGTTGGGTGGTTGCATATGACATTTGGGGAGTTACGAAGATTTG  314

Query  298  ATCGAACACTTTGGTGTTCTTGTCTTGT-CGGCTGGTGAAGTTTATTATGCTGTTTTTAA  356
            ||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct  315  ATCGAACACATTGGTGTTCTTGTCTTGTTCGGCTGGTGATGTTTATTTTGCTGTTTTTAA  374

Query  357  ATGTAAAGAAATAACTAATAATGTAGAGAATATGATTTTGTAAGAATGATACTCTTTCTC  416
            |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  375  ATGTAAAGAAGTAACTAATAATGTAGAGAATATGATTTTATAAGAATGATACTCTTTCTC  434

Query  417  GTTATTAGTATTAAAAGATAAAATGCCTCTTCCGAGTTTCTGCATT  462
            ||||||| |||| || ||||||| ||||||| ||||||||||||||
Sbjct  435  GTTATTATTATTTAA-GATAAAAGGCCTCTTTCGAGTTTCTGCATT  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5