BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489277
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24170.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 946 0.0
> AT5G24170.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr5:8189483-8191392 REVERSE LENGTH=790
Length=790
Score = 946 bits (512), Expect = 0.0
Identities = 570/599 (95%), Gaps = 0/599 (0%)
Strand=Plus/Plus
Query 1 TTTTTCTCCGATCATCGGAAAACGCAGTAATCGAGATGCAGAAGCTCAACGACTTCTTCT 60
|||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 3 TTTTTCTCCGATCATCGGAAAAAGCAGTAATCAAGATGCAGAAGCTCAACGACATCTTCT 62
Query 61 CTGGTGGCGGTGACGGCGAAGGAACAACCGATAGTTTCCTTGAAGAAGGATCGGAGGGTC 120
| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 63 CCGGTGGAGGAGACGGCGACGGAACAACCGATAGTTTCCTTGAAGATGGATCGGAGGGTC 122
Query 121 TCTGTGCGCTCTCCACTACCCAGAGAATGTACGGATTCGCCGCATCTTTAGCCACTGGTT 180
||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 123 TCTGTGCTCTCTCCACCACCCAGAGAATGTACGGATTCGCCGCGTCTTTAGCCACTGGTC 182
Query 181 TGCTGCTTATGTTCCTGTCTATGATTGTATTTGGTATCCCCATCAAATTTGCACTGCTCT 240
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 183 TGCTACTTATGTTCCTGTCTATGATTGTATTTGGGATCCCCATCAAATTTGCACTGCTCT 242
Query 241 TCACATTTGGAAATGTTCTAGCTATTGGAAGCACAGCTTTCCTCATGGGACCTGAGCAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCACATTTGGAAATGTTCTAGCTATTGGAAGCACAGCTTTCCTCATGGGACCTGAGCAAC 302
Query 301 AGATGAATATGATGTTTGACCCTGTTCGTTTCTTAGCTACATCCATTTATATCGGATGTG 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGATGAGTATGATGTTTGACCCTGTTCGTTTCTTAGCTACATCCATTTATATCGGATGTG 362
Query 361 TCGTTGTTGCACTCATTTGTGCTCTCCTGATCCACAGCAAAATTTTAACCGTCCTTGCGA 420
||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||
Sbjct 363 TCGTTGTTGCACTCATTTGCGCTCTCCTGATCCATAGCAAAATCTTAACGGTCCTTGCGA 422
Query 421 TCCTATGCGAGATTTGTGCACTAATATGGTACAGCCTCAGTTATATTCCATTCGCACGGA 480
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 423 TCTTATGTGAGATTTGTGCACTGATATGGTACAGCCTCAGTTATATTCCATTCGCACGGA 482
Query 481 GAATGGTCTCTGAAATAATGATCCGTCTCTGCGACACCGAGCTATAGTCAGTCATCTGGC 540
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 483 GAATGGTCTCTGAAATAATGATCCGTCTTTGTGACACTGAGCTATAGTCAGTCATCTGGC 542
Query 541 AGCAAGATACAAAGCACATAAATTGTTTTATACTGGTCTCAAGAACTTGAGATCTGATT 599
||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 543 AGCAAAACACAAAGCACATAAATTGTTTTATACTGGTCTCGAGAACTTGTGATCTGATT 601
Score = 182 bits (98), Expect = 5e-45
Identities = 115/123 (93%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 600 TGAGCTTGTTTTATTGGGGTCGTGAAGCTCTTGTGTGTATTTTGTTGCTTCAAGCTCTTT 659
|||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 661 TGAGTTTGTTTTATTGGGGTCTTGAAGCTCTTGTGTGTATTTCGTTGCTTCAAGCTCTTC 720
Query 660 TGTTGCTTCAGTCTT-TAACGTTGTTTGGCATTTTGTGTGATCAAATACAAAGGttt-tt 717
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 721 TGTTGCTTCAGTCTTAAAACGTTGTTTGGCATTTTGTGTGATCAAATACAAAGATTTCTT 780
Query 718 ttt 720
|||
Sbjct 781 TTT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5