BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489279
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5... 948 0.0
AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5... 599 2e-170
AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5... 501 5e-141
> AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5:8199757-8201051
FORWARD LENGTH=1016
Length=1016
Score = 948 bits (513), Expect = 0.0
Identities = 686/765 (90%), Gaps = 29/765 (4%)
Strand=Plus/Plus
Query 1 ATGCCTGATGTGAAACTTGACATCCGATGCATCTTTA-ATAACCTCCATGGAGGCGGCC- 58
||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||
Sbjct 1 ATGCCTGATGTGAAACTTGACATCCGATGCATC-TTAGATAACCTCCATCAAGGC-CCCA 58
Query 59 GGACTATCCACGCCATACAAGCTATCAGCGCTATGATTGACAAACACAGCGAATCAGCTA 118
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 59 GGACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAAACACAGCGAATCAGCTA 118
Query 119 TATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGATGGCCGGGAAGACCATGA 178
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 119 TCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCCGGGAAGACCATGA 178
Query 179 ACATTTATGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATCATAACTGTTCCTC 238
| |||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 179 AAATTTCTGGATTCCTTCTCGAGAGTTACATATTCAACCCACCCATCATATCTATTCCTC 238
Query 239 TGGAGCAGCTACCTGGCGGCGGTAC-ACTTAAAGGTGTGTATCGAATCGCCGAGAGTCTC 297
| ||||||||||||||||||| | | |||||||||||||| ||||||| ||||||| |||
Sbjct 239 TAGAGCAGCTACCTGGCGGCGTT-CTACTTAAAGGTGTGTTTCGAATCACCGAGAGCCTC 297
Query 298 GTCAAAGCTACTGCAGCTAGT-TT-CGAGATGGCCTTAACCAATCAACGGGTTCAAGAAG 355
||||||||||||||||||| | || | | |||||||||| ||||||||||||||||||
Sbjct 298 GTCAAAGCTACTGCAGCTACTGTTACTA--TGGCCTTAACTGATCAACGGGTTCAAGAAG 355
Query 356 ATTCTAAGACAGCATCGTGGATACCTTATATATATGTGAATCCAGCAGATCCAATTTGTG 415
|||| || ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 356 ATTCCAAAACAGCATTGTGGATACCTTATTTATATGTGAATCCAGCAGATCCAATATGTG 415
Query 416 CAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTAAGATCGGAGCAAGTAAAA 475
|||||||||| |||||||||| |||||||| |||||||||||||||||||||||| | |
Sbjct 416 CAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGATCGGAGCAAGCCACA 475
Query 476 TCGAGAAAACCGGTTCTAGACAT-TCATTTAGAACTCAATGGAAACGAGGAATAGGAACA 534
|||||| || |||||||||| | |||||||||| || ||||| ||| |||||||||||
Sbjct 476 TCGAGAGAATCGGTTCTAGA-AGCTCATTTAGAAATCCATGGACCCGAAGAATAGGAACA 534
Query 535 TCATCA-C--CA-C-T-------GTCCGATTTGTCAATGGAACCTCTTCACCTTCTTCCA 582
|||||| | || | | ||| |||||||||||||||||||||||||||||||||
Sbjct 535 TCATCATCATCATCATCACCACTGTCTGATTTGTCAATGGAACCTCTTCACCTTCTTCCA 594
Query 583 TCAGCAGATATGACTATCAACAAGAACAAATCGTG-TTCGTCTATGGTAGCTCATGGGCT 641
||||||||||||||| | ||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 595 TCAGCAGATATGACTGTAAACAAGAACAAATCG-GCTTCGTCTATGGCAGCTCATGGGCT 653
Query 642 TCACCAATGGTGGGAGCAAGACTCGGTCCTAAGGAAAAATTGGAAAAGCTGCTTAATTAG 701
|||||||||||||||||||||||| |||||||||||||||||||||| ||| || |||||
Sbjct 654 TCACCAATGGTGGGAGCAAGACTCCGTCCTAAGGAAAAATTGGAAAAACTGTTTGATTAG 713
Query 702 GCCCGACCCTGAAGGCAAATCTTGAA-AGGATGCATCAAATGATA 745
|||||| |||| || ||||||||||| || ||||||||||||||
Sbjct 714 GCCCGATCCTGGAGACAAATCTTGAAGAG--TGCATCAAATGATA 756
> AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5:8195600-8197119
FORWARD LENGTH=1128
Length=1128
Score = 599 bits (324), Expect = 2e-170
Identities = 598/727 (82%), Gaps = 31/727 (4%)
Strand=Plus/Plus
Query 6 TGATGTGAAACTTGACATCCGATGCATCTTTAATAACCTCCATGGAGGCGGCCGGACTAT 65
|||| ||||||||||| || ||||||||| || | ||||||| ||| ||| || ||||
Sbjct 399 TGATTTGAAACTTGACCTCAAATGCATCTTCAACACCCTCCATCAAGGTGGCAGGTCTAT 458
Query 66 CCACGCCATACAA-GCT-ATCAG-CGCTATGATTGACAAACACAGCGAATCAGCTATATG 122
|||||||| || | | ||| | || |||| | |||||||||| | | |||||||| ||
Sbjct 459 GTACGCCATA-AATG-TAATCCGCCG-TATGGTGGACAAACACAACCATTCAGCTATCTG 515
Query 123 GCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGATGGCCGGGAAGACCATGAACAT 182
||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 516 GCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGAAAAT 575
Query 183 TTATGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATCAT-AACTGTTCCTCTGG 241
|| |||||||||||||||||||||||||||||||||||||||| | || ||||||| |
Sbjct 576 TTCTGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATC-TCGTCTATTCCTCTAG 634
Query 242 AGCAGCTACCTGGCGGCGGTACACTTAAAGGTGTGTATCGAATCGCCGAGAGTCTCGTCA 301
||||||||||||| |||| || | |||||||| ||| || |||| || ||||| ||||||
Sbjct 635 AGCAGCTACCTGGTGGCGATATAATTAAAGGTTTGTTTCAAATCACCAAGAGTGTCGTCA 694
Query 302 AAGCTACTGCAGCTAGTTTCGAGATGGCCTTAACCAATCAACGGGTT-C--AAGAAGATT 358
|||| || | | ||| | |||||||||||| ||| || |||| | |||| |||
Sbjct 695 AAGCCAC--C-G-TAG---C--CATGGCCTTAACCGATCTACAGGTTCCAAAAGACGATC 745
Query 359 CTAAGACAGCATCGTGGATACCTTATATATATGTGAATCCAGCAGATCCAATTTGTGCAG 418
| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 746 CAAAGACAGCATCATGGATACCTTATTTATATGTGAATCCAGCAGATCCAATATGTGCAG 805
Query 419 GATACATCGATTACTTCAGACACAAAACCTTCATGTCTAAGATCGGAGCAAGTAAAATCG 478
|||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||
Sbjct 806 GATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCG 865
Query 479 AGAAAACCGGTTCTAGACATTCATTTAGAACTCAAT-GGAAACGAGGAATAGGAACA-TC 536
||| || |||| ||||| | ||| |||| | || || || || ||| ||||| | |
Sbjct 866 AGAGAATCGGTGCTAGAAAATCAGTTAGGAGTCTATTGGTGG-GAAGAAGAGGAAAACT- 923
Query 537 ATCACCACTGTCCGATTTGTCAAT-GGAACCTCTTCACCTTCTTCCATCAGCAGATATGA 595
|||||| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 924 ATCACC---GTCGGATTTGTCA-TCGGAACCTCTCCACCTTCTTCCATCAGCAGATATGA 979
Query 596 CTATCAACAAGAACAAATCGTGTTCGTCTATGGTAGCTCATGGGCTTCACCAATGGTGGG 655
|| | |||||||||||| || | ||| | | |||||| || ||||||||||||||||
Sbjct 980 CTGTAAACAAGAACAAACCGACTAAGTCAACGACAGCTCACGGACTTCACCAATGGTGGG 1039
Query 656 AGCAAGACTCGGTC-CTAAGGAAAAATTGGAAAAGCTGCTTAATTAGGCCCGACCCTGAA 714
||| ||||||| | || ||| |||||||| ||||||||| || || || ||| ||||
Sbjct 1040 AGCGAGACTCGA-CACTGAGGGAAAATTGGGAAAGCTGCTGCATCAGACCTTACCATGAA 1098
Query 715 GGCAAAT 721
|||||||
Sbjct 1099 GGCAAAT 1105
> AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5:8225861-8227551
FORWARD LENGTH=1131
Length=1131
Score = 501 bits (271), Expect = 5e-141
Identities = 588/735 (80%), Gaps = 46/735 (6%)
Strand=Plus/Plus
Query 1 ATGCCTGATGTGAAACTTGACATC-C-GATGCATCTTTAATAACCTCCATGGAGGCGGCC 58
||| |||||||||||| | | ||| | || | ||| || | |||||||| ||||||
Sbjct 406 ATGACTGATGTGAAACAT-A-ATCTCAAATTTAGCTTCAACACCCTCCATGAAGGCGGTA 463
Query 59 GGACTATCCACGCCATACAAGCTATCAGCGC--TATGATTGACAAACACAGCGAATCAGC 116
|| || | || ||||||| ||| || | ||| |||| | ||||||||||| ||| ||||
Sbjct 464 GGTCTTTGCAGGCCATACGAGCAAT-A-CGCAGTATGGTGGACAAACACAGTGAAGCAGC 521
Query 117 TATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGATGGCCGGGAAGACCAT 176
||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 522 TATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCAT 581
Query 177 GAACA--TTTATGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATCATAACTGT- 233
|| || ||| ||||||||||||||| |||||||| ||||||||||||||| | |||
Sbjct 582 GA-CAAGTTT-TGGATTCCTCCTCGAAAGTTACATCTTCAACCCACCCATC-TCG-TGTA 637
Query 234 T-CCTCTGGAGCAGCTACCTGGCGGCGGTACACTTAAAGGTGTGTATCGAAT-CGCCGAG 291
| ||||| |||||| ||||||| || | | |||||||||||| || ||| | || ||
Sbjct 638 TTCCTCTAGAGCAGTTACCTGGGGGAAAAAAAATTAAAGGTGTGTTTC-AATTCACCAAG 696
Query 292 AGTCTCGTCAAAGCTACTGCAGCTAGTTTCGAGATGGCCTTAACCAATCAACGGGTTCAA 351
| | ||||||||||||| | ||||| | | | | | |||||| ||| || |||||||
Sbjct 697 ACTGTCGTCAAAGCTACCGTAGCTA-T---G-G-T--C-TTAACCGATCTACAGGTTCAA 747
Query 352 GAAGAT--TCTAAGA-CAGCATCGTGGATACCTTATATATATGTGAATCCAGCAGATCCA 408
||||| || || | ||||||| |||||||||||| |||| ||||| ||||||||||||
Sbjct 748 GAAGACGATCCAAAAACAGCATCATGGATACCTTATTTATACGTGAACCCAGCAGATCCA 807
Query 409 ATTTGTGCAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTAAGATCGGAGCA 468
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 808 ATATGTGCGGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGATAGGAGCA 867
Query 469 AGTAAAATCGAGAAAACCGGTTCTAGACATTCATTTAGAACTCAATGGAAACGAGGAATA 528
|| | ||||||| || |||| || || | ||| |||| | || || || | |||| |
Sbjct 868 AGCCACATCGAGAGAATCGGTGCTGGAAAGTCAGTTAGGAGTCTATTGAT--G-GGAA-A 923
Query 529 GGAACATCATCACCACTGTCCGATTTGTCAATGGAACCTCTTCACCTTCTTCCATCAGCA 588
| |||||||| || | ||||||||| ||||||||||||||||||||||||||||
Sbjct 924 --ATCATCATCATCA--G----ATTTGTCAACGGAACCTCTTCACCTTCTTCCATCAGCA 975
Query 589 GATATGACTATCAACAAGAACAAATCGTGTTCG-TCTATGGTAGCTCATGGGCTTCACCA 647
||||||| | | |||||||||||| || | | | |||| ||||||||| ||||| ||
Sbjct 976 GATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAGCTCATGGACTTCATCA 1034
Query 648 ATGGTGGGAGCAAGACTCGGTCC-TAAGGAAAAATTGGAAAAGCTGCTTAATTAGGCCCG 706
||||||||||| |||||||| || | ||| |||||||| ||||||||| || || ||
Sbjct 1035 ATGGTGGGAGCGAGACTCGG-CCATGAGGGAAAATTGGGAAAGCTGCTGCATCAGACCTT 1093
Query 707 ACCCTGAAGGCAAAT 721
||||||| |||||||
Sbjct 1094 ACCCTGACGGCAAAT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5