BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489282
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24240.1 | Symbols: | Phosphatidylinositol 3- and 4-kinase ... 3459 0.0
> AT5G24240.1 | Symbols: | Phosphatidylinositol 3- and 4-kinase
;Ubiquitin family protein | chr5:8230942-8234150 REVERSE LENGTH=2380
Length=2380
Score = 3459 bits (1873), Expect = 0.0
Identities = 2127/2249 (95%), Gaps = 19/2249 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaCTGAAGAGAGGGGTTTTCGAATTCTCAGAAACTTGGCGAGTAAGTTTTATCG 60
||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 80 AAATAAAATTGAAGAGAGGGGTTTTCGAATTCTCGGAAACTTGGCGAGTAAGTTTTATCG 139
Query 61 ---AACACCAGTTCCGATTTCACTAAGAAGAATCGCTTCACGGATTTTTATTTCGAGGTT 117
|||||||||||||| | | ||| |||||||||||||||||||| |||||||
Sbjct 140 AATAACACCAGTTCCGA--T---T-AGATTCTTCGCTTCACGGATTTTTATTCCGAGGTT 193
Query 118 CTTTGCGATTGATGCGATTACGAGAGACATTTTAGCTACGGTAATTCGAACGAAAGCCTA 177
||||| |||||||| |||||||||| |||||| ||||||| ||||||| |||||||||||
Sbjct 194 CTTTGGGATTGATGTGATTACGAGATACATTTCAGCTACGATAATTCGTACGAAAGCCTA 253
Query 178 ATCATAGGTGGTTTAGGATTGTTTTAACTCCGATATGAACATTTGGCAAATATTGCTTGG 237
|||||||| |||||||| |||| |||||| | |||||||| ||||| |||||||| ||||
Sbjct 254 ATCATAGGGGGTTTAGGGTTGTCTTAACTTCAATATGAACTTTTGGAAAATATTGATTGG 313
Query 238 CAAGATGTGAGTTAGAAAGCTCTTCAGTTCCAGAGTTCCTGAATCCGTGCAGGAACTTGG 297
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
Sbjct 314 CAAGATGTGAGTTAGAAAGCTTTTCAGTTCCAGAGTTCCTGAACCCGTGCAGGGACTT-G 372
Query 298 GTC-TTTCTAAAGCTCACGGGAGAAGAATAA-GGTTGATTCCTGGGATTTCAGCCTTTAT 355
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 373 GTCTTTTCTAAAGCTCACGGGAGAAGAATAAGGGTTGATTCCTGGGATTTCAGCCTTTAT 432
Query 356 T-CCTGTTGAGCTCTCTTCATTCCCAGGAATTTAGGATAGAAGTGTACAGTTGGAATGTC 414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCCCTGTTGAGCTCTCTTCATTCCCAGGAATTTAGGATAGAAGTGTACAGTTGGAATGTC 492
Query 415 AGTTGCTAGTGTAGCGTTGAGTCCAGCCCTGGAGGAACTTGTCAACTTTCCAGGTATTAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AGTTGCTAGTGTAGCGTTGAGTCCAGCCCTGGAGGAACTTGTCAACTTTCCAGGTATTAT 552
Query 475 TGGACGGTTTGGTTTGAACTTAGACGACCCAATCCTGGTTTTTCTCACTATTGCTGGATC 534
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 553 TGGACGGTTTGGTTTCAACTTAGACGACCCAATCCTGGTTTTTCTGACTATTGCTGGATC 612
Query 535 TGTGATCCCTAAGCGGGTCATGGAGTCAGATTCAATAGCATCTGTGAAGCTAAGGATTCA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGTGATCCCTAAGCGGGTCATGGAGTCAGATTCAATAGCATCTGTGAAGCTAAGGATTCA 672
Query 595 GAGTATCAAGGGGTTTTTTGTGAAAAAGCAGAAACTTCTATATGATGGTAGAGAGCCAAC 654
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | |
Sbjct 673 GAGTATCAAGGGTTTTTTTGTGAAGAAGCAGAAACTTCTGTATGATGGTAGAGAGGTATC 732
Query 655 TCGAAATGATTCCCAAATTCGAGATTATGGCCTTGCTGATGGGAAACTGTTGCATTTGGT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TCGAAATGATTCCCAAATTCGAGATTATGGCCTTGCTGATGGGAAACTGTTGCATTTGGT 792
Query 715 TATTAGCCTTTCAGATCTTCAAGCCATTTCTGTAAGAACTGTTGATGGGAAAGAGTTTGA 774
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TATTAGACTTTCAGATCTTCAAGCCATTTCTGTAAGAACTGTTGATGGGAAAGAGTTTGA 852
Query 775 GCTCGTTGTTGAGAGGAGTAGAAATGTTGGTTACGTGAAGCAGCAAATTGCTTCAAAGGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GCTCGTTGTTGAGAGGAGTAGAAATGTTGGTTACGTGAAGCAGCAAATTGCTTCAAAGGA 912
Query 835 AAAAGAGCTTGGAATCCCCAGGGATCATGAACTCACATTAGATGGTGAAGAGCTGGATGA 894
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAAAGAGCTCGGAATCCCCAGGGATCATGAACTCACATTAGATGGTGAAGAGCTGGATGA 972
Query 895 CCAGAGACTCATCACTGATCTCTGTAAAAATGGAGAGAATGTGATTCACTTGCTAATTAG 954
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 973 CCAGAGACTCATCACTGATCTCTGTCAAAATGGAGACAATGTGATTCACTTGCTAATTAG 1032
Query 955 GAAATCCGTTAAAGTCAGAGCTAAACCAGTGGGGAAGGATTTTGAGGTGTTTATTGAAAA 1014
||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 1033 CAAATCCGCTAAAGTCAGAGCTAAACCAGTGGGGAAGGATTTTGAAGTGTTTATCGAAGA 1092
Query 1015 TGTAAATCACAAGCACAATGTGGATGGTAGAAGAGGGAAAAACATATTATCACAAGTGAA 1074
|||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||
Sbjct 1093 TGTAAATCACAAGCACAATGTGGATGGTAGAAGAGGAAAAAACATATCATCAGAAGCGAA 1152
Query 1075 GCATAAAGAGTTCTTTGTGGAGCCTGTTATTGTTAATCCTGAAATTAAACTGCCTTTATT 1134
|| |||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 1153 GCCTAAAGAGTTCTTCGTGGAGCCTTTTATTGTTAATCCTGAAATTAAACTTCCGATATT 1212
Query 1135 GCTCAAAGAACTTATCAGCTCCACTTTAGAAGGCTTGGAGAAGGGAAATGGCCCGATTCA 1194
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1213 GCTGAAAGAGCTTATCAGCTCCACTTTAGAAGGCTTGGAGAAGGGAAATGGCCCAATTCG 1272
Query 1195 ATCATCTGATGGATCAGGAGGTGCTTATTTTATGCAAGATCCATCCGGACACAAGTATAT 1254
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 1273 ATCATCTGATGGATCAGGAGGAGCTTATTTTATGCAAGATCCATCTGGACACAAGTATGT 1332
Query 1255 CTCTGTCTTCAAGCCCATTGACGAGGAGCCAATGGCTGTGAACAATCCGCGCGGACAGGC 1314
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 1333 CTCTGTCTTCAAGCCCATTGACGAGGAACCAATGGCTGTGAACAATCCGCATGGACAGCC 1392
Query 1315 TGTTTCAGTTGATGGCGAGGGACTAAAGAAAGGTACACAGGTAGGTGAAGGAGCTATGAG 1374
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1393 TGTTTCAGTAGATGGCGAGGGACTAAAGAAAGGCACACAGGTTGGTGAAGGAGCTATCAG 1452
Query 1375 AGAAGTAGCAGCCTACATTTTGGACTATCCCATGACTGGACCACGAACTTTTCCTCATGA 1434
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1453 AGAAGTAGCAGCCTACATTTTGGACTATCCTATGACTGGACCACGAACTTTTCCTCATGA 1512
Query 1435 CCAAACCGGTTTCGCTGGAGTTCCGCCAACAACAATGGTCAAATGCTTACACAAGGATTT 1494
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1513 CCAAACCGGTTTTGCTGGTGTTCCGCCAACAACAATGGTCAAATGCTTGCACAAAGATTT 1572
Query 1495 CAACCATCCTAATGGTTACAGTTTCGCTCCTGAGAACACAAAAATCGGTTCACTGCAGAT 1554
||||||||| ||||||||||||||| |||||||||||||||| || || |||||||||||
Sbjct 1573 CAACCATCCCAATGGTTACAGTTTCTCTCCTGAGAACACAAAGATAGGCTCACTGCAGAT 1632
Query 1555 GTTTGTGAGTAATGTTGGAAGTTGTGAAGATATGGGATACCGAGTATTCCCTGTCGATCA 1614
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1633 GTTTGTGAGTAATGTTGGAAGTTGCGAAGATATGGGATACCGAGTATTCCCTGTCGATCA 1692
Query 1615 GGTTCACAAGATATCGGTTCTAGACATAAGGCTGGCTAATGCAGATCGACATGCTGGCAA 1674
||||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1693 GGTTCACAAGATATCAGTACTAGACATAAGACTGGCTAATGCTGATCGTCATGCTGGCAA 1752
Query 1675 CATTTTGGTCAGCCGAGACGGAAAAGATGGCCAGATGGTGCTTACTCCAATAGACCACGG 1734
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1753 CATTTTGGTTAGCCGAGATGGAAAAGATGGTCAGATGGTGCTTACTCCAATAGACCATGG 1812
Query 1735 CTATTGCTTTCCCAATAAGTTTGAAGATTGCACATTTGAATGGCTATACTGGCCTCAAGC 1794
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1813 CTATTGCTTTCCCAATAAGTTTGAAGATTGCACATTCGAATGGCTATACTGGCCTCAAGC 1872
Query 1795 AAAAGAGCCATACTCTTCAGAGACAGTGGAATACATCAAATCCTTGGACCCTGAGCAAGA 1854
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1873 AAAAGAGCCATACTCTTCAGAGACATTGGAATACATCAAATCCTTGGACCCCGAGAAAGA 1932
Query 1855 CATCAAACTTCTGAGACTCCATGGTTGGGAGATTCCGCCTGCATGCGCCCGTGTCCTCCG 1914
|||| ||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 1933 CATCGAACTTCTGAGATTCCATGGTTGGGAGATTCCACCTTCATGCACCCGTGTCCTCCG 1992
Query 1915 TATTTCAACCATGCTTCTAAAGAAAGGTTCTGCAAAGGGTCTCACACCTTTTACCATCGG 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 TATTTCAACCATGCTTCTAAAGAAAGGTTCTGCAAAGGGTCTCACACCTTTTACCATCGG 2052
Query 1975 AAGCATAATGTGCAGAGAAACACTCAAGGAAGAATCTGTGATCGAACAAATCATACATGA 2034
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2053 AAGCATAATGTGCAGAGAAACACTCAAGGAAGAATCTGTGATCGAGCAAATCATACATGA 2112
Query 2035 TGCAGAAGCCATAGTGCCGGCAGAGACAACCGAAGATGAGTTTATCAA-CACCGTCTCTG 2093
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 2113 TGCAGAAGCCATAGTGCCCACAGAGACAACCGAAGATGAGTTTAT-AAGCACCGTCTCTG 2171
Query 2094 CCATTATGGACAACCGGCTCGACCAGTATGCTTGGAACTGAAAAATATCGTT-ATCGTTC 2152
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2172 CCATTATGGACAACCGGCTCGACCAGTATGCTTGGAACTGAAAAATATC-TTCATCGTTC 2230
Query 2153 CTTCACCCCAATCTTTGTTTGTGATTGTTCAACAGATGTATATCCAGTGTCCGTAACTAT 2212
||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2231 TTTCGCTCCAATCT--GTTTGTGATTGTTCAACAGATGTATATCCAGTGTCCGCAACTAT 2288
Query 2213 AAATAAGTGTCACTGTCTTTGAACTAATC 2241
|||||||||||||||||||||||||||||
Sbjct 2289 AAATAAGTGTCACTGTCTTTGAACTAATC 2317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111194207175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5