BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489287
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24290.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 1744 0.0
> AT5G24290.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr5:8263132-8265741 REVERSE LENGTH=1915
Length=1915
Score = 1744 bits (944), Expect = 0.0
Identities = 1315/1483 (89%), Gaps = 70/1483 (5%)
Strand=Plus/Plus
Query 274 AGATCCAATAATACTCGAGACTACTGTGAGCGAAACCGGTTCGAACAATGAAACCGGTTC 333
|||||||||| |||| |||| ||||||||||||||||||||| | || | || |
Sbjct 399 AGATCCAATAGTACTTGAGAGTACTGTGAGCGAAACCGGTTC--A-AACG-AA---G--- 448
Query 334 AAACCAAGGAACCGGTTCAAACGAAGAAAATGGTAATAATTGGTTAGAGTCGAGCTCTAC 393
|| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 449 -AATC-TGAAACCGGTTCAAACGAAGAAAATGGTAATAATTGGTTAGAGTCGAGCTCCAC 506
Query 394 AAACTTACCaaaagtagaaaacgaaaggcaacagaacggagaagattgtgagat-g--ga 450
|||||| ||||| ||||| ||| ||||||||| ||| ||||||||||||||||| | ||
Sbjct 507 AAACTTGCCAAATGTAGAGAACAAAAGGCAACGGAATGGAGAAGATTGTGAGATAGAAGA 566
Query 451 agaagaagaaaagaacgagagatc---atc--a-tc-----ag-tttcaga---agagaa 495
||||||||||| ||||||||||| ||| | || || ||| | ||||||
Sbjct 567 GGAAGAAGAAAATAACGAGAGATCATTATCGGATTCAGAAGAGAAGTCAAACCTAGAGAA 626
Query 496 gTTGCTTGCAACACAAGAAAACTACGAGCTTGgagaa-gaggatgaagaaaagaaggaga 554
|||||||| |||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 627 GTTGCTTGGGACACAAGAAAACTATGAGCTTGGA-AATGAGGATGAAGAAAAGAACGAGA 685
Query 555 gatcatcatcagattcagaagagaagTCAAACCTGGAGAAGTTGCTTGCGACACAAGAAA 614
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 686 GATCATCGTCAGATTCAGAAGAGAAGTCAAACCTAGAGAATTTGCTTGCGACACAAGAAA 745
Query 615 AGTACGAGCTCTATTGTCCAAGCTGTAGCTCATGTATCACCAGAAAAGTGATTCTCAAGA 674
| |||||||| || ||||| ||||||||| |||||||||||||||| ||| |||||||||
Sbjct 746 ACTACGAGCTTTACTGTCCTAGCTGTAGCACATGTATCACCAGAAATGTGGTTCTCAAGA 805
Query 675 AAAGAAAACGAGGGAAGCACGTTGATTCGTCTCCAGATCTGAAACCCGATGTACCGGTTG 734
||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||
Sbjct 806 AAAGAAAACGAGGGAAGCACGTTAATTCATCTCTGGATCTGAAACCCGATATACCGGTTG 865
Query 735 TT---------GAACCAAGCCACATTGAGGAGATGGAGCCACCGGTTAAGGTTCATGTCC 785
|| ||||||||| |||||||||||||||| |||| ||||||||| ||||||
Sbjct 866 TTGAACCGGACGAACCAAGCGACATTGAGGAGATGGAATCACCAGTTAAGGTTTATGTCC 925
Query 786 CTGAGACTCGTATTGAGGATGATACTCAAGAAGATAAAGAGGAGGGAATTATCTTCAATT 845
|||||||||| |||||||||| | |||||||||| || | ||||||| |||||| | ||
Sbjct 926 CTGAGACTCGGATTGAGGATG--A-TCAAGAAGAT-AA-A-GAGGGAACTATCTTTACTT 979
Query 846 GCTTGG-CT-TG-TCTAAAGTACTTCATCCGGTTAGGAACAAGGTTCTTACAACTTGATT 902
|||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 980 GCTTGGTTTGTGATCTAAAGTACTTCATCCGGTTAGGAACAAAGTTCTTACAACTTGATT 1039
Query 903 ATATCACGGGAAAACCAGTTGAGGAACCAGTTGAAGAATGTATAGAGGTGATCATGAGGA 962
|||||| ||||||||| |||||| || |||||||||||| |||||| || ||||||
Sbjct 1040 ATATCAGGGGAAAACCGGTTGAGAAATCAGTTGAAGAATATATAGA--TG----TGAGGA 1093
Query 963 ATAGTATAAACACCACACAATCACCGA-CACAAATTCAACCGGACCGAGAAAGATTCGCC 1021
| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1094 AGAGTATAAACACCACACAATCACC-ACCACAAATTCAACCGGACGGAGAAAGATTCGCC 1152
Query 1022 GTTGAGTTGTTAAAGAGCACTGTCTACGGCGGTCTCACTGAGACCATCACCAGCCTCGGC 1081
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ATTGAGTTGTTAAAGAGCACCGTCTACGGCGGTCTCACTGAGACCATCACCAGCCTCGGC 1212
Query 1082 GTTGTATCCTCGGCCTCTGCCTCCGGTTCCTCCACCATGAATATCTTGGCTCTTGCGGTC 1141
|||||||| || || |||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1213 GTTGTATCATCTGCTTCTGCCTCTGGTTCCTCCACCATGAATATATTGGCTCTTGCTGTC 1272
Query 1142 GCAAATTTGGCCGGTGGGCTCATCGTCCTAGCTCAAAACCTTCAAGATCTAAGAAACAGT 1201
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1273 GCAAATTTGGCCGGTGGGCTCATCGTCCTCGCTCAAAACTTTCAAGATCTAAGAAACAGT 1332
Query 1202 TCAGATCAAGAGAAAGATCGGTACGAGGAATTGTTAGGGAGACGTGCTAATTTCCGGATA 1261
|||||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||
Sbjct 1333 TCAGATCAAGAGAAAGATAGGTACGAGGAATTGTTAGGGAGACGTACTAAATCCCGGATA 1392
Query 1262 CATATCTTAGTAGCGGTGATGTCTTACATTTTCTTCGGCATAATGCCTCCATTGGTTTAC 1321
||||||||||||||||| ||||||||||||||||||||| |||| ||||| || ||||||
Sbjct 1393 CATATCTTAGTAGCGGTCATGTCTTACATTTTCTTCGGCCTAATTCCTCCGTTAGTTTAC 1452
Query 1322 GCATTTTCTTTCTACGAGACCGGAATCAAGAACTACAAGCTCATCTCGGTTTTCTTGGTT 1381
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1453 GCATTTTCCTTCTACGAAACCGGAATCAAGAACTACAAGCTCATCTCGGTTTTCTTGGGT 1512
Query 1382 TCTCTACTGTGCGTGATTTTGCTCGGTAT-GATCAAGGTCTATGTCCGAAAACCG-CCAA 1439
||||| | ||||| |||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 1513 TCTCTGGTTTGCGTAATTTTGCTCGGT-TCGATCAAGGTCTATGTCCGAAAACCAACCAA 1571
Query 1440 ACTCACGTGAATTGACTAAAGCTTATCTAAAATCTGCGGCTTATTATACGTCTACTGTTG 1499
||| ||| || ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1572 T-TCATGTGGATCGACTAAAGCTTATCTCAAATCTGCGGCTTATTATACGTCTATTGTTG 1630
Query 1500 TTGCTTCTTGCGGAATTTCATACTTTGTCGGAGATATTATGGGAGAGTATATCG-GTAAG 1558
|||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||
Sbjct 1631 TTGCTTCTTGCGGAATCTCATACGTTGTCGGAGATATTATGGGAGAGTATATCGAG-AAG 1689
Query 1559 CTCAGTTTGGTGGGTTTAGACCAGATCAGTATAACTTCACCATGTTATGGAACTAAACCC 1618
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1690 CTCAGTTTGGTTGGTTTAGACCAGATCAGTATAACTTCACCATGTTATGGAATTAAACCC 1749
Query 1619 GAGGAGTGCCGGTTTACTTCCTTTTAATGTAGTGAAAGGTGGAACTAAGAACCGGTCAGA 1678
|||||||||||||||||||||||||||| | | | || ||| |||||||||||||| ||
Sbjct 1750 GAGGAGTGCCGGTTTACTTCCTTTTAAT--A-T-ACAG-TGGGACTAAGAACCGGTCTGA 1804
Query 1679 CCAGCGTCGTATA-TTTCTGTTCTAATTACTTACTAAATCTCT 1720
||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1805 CCAACGTTGTATAATTTCTGTTCTAATTACTTACTAAATCTCT 1847
Score = 340 bits (184), Expect = 2e-92
Identities = 243/271 (90%), Gaps = 6/271 (2%)
Strand=Plus/Plus
Query 1 AGAACATTGGCATCGGTTTCATTACATTGGGATTGATATGGAAAAGTCAAACGGACCAGT 60
|||||||||| ||| | |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 87 AGAACATTGGAATCAGATTCATTACATAGGGATTGATATGGAAAAGTCAAACCAACCAGT 146
Query 61 TAATGCAAGCTGGTCCGAATTGAAGGACGGCGACAAAGAACTCGTAGATGCAGAATGTTT 120
| ||| || || |||||||||||||||||| || |||||| |||| ||||| |||| |||
Sbjct 147 TCATGTAACCTTGTCCGAATTGAAGGACGGAGATAAAGAAATCGTTGATGCTGAATTTTT 206
Query 121 GGTTGATCTTCTTGAGAGCTATAGATTTGGTAAGGATAATGTTCCAGCCCGAGAATTTCG 180
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 207 GGTTGATCTTCTTGAGAGCTATAGATTTGGTAAAGATAATGTTCCCGCCCGAGAATTTCG 266
Query 181 ATTCAAGGCGGCAGCGACGGCGCCGGCGCCGGTCAACACCACCGAGATAGAGGTGGAAGT 240
|| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 267 ATCCAAGGCGGCAGCGACGGCTCCGGCGCCGGTCAACACCACCGAGATAGAGTTGGAAG- 325
Query 241 CGAAGAGGACAATGATGGATCTCAAGCTCAA 271
| | | | |||||||||||||||||||||
Sbjct 326 --A-G-G-ATAATGATGGATCTCAAGCTCAA 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85039723230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5