BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489289
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synth... 3526 0.0
> AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synthases,
ADP-glucose type | chr5:8266798-8271196 FORWARD LENGTH=2431
Length=2431
Score = 3526 bits (1909), Expect = 0.0
Identities = 2137/2247 (95%), Gaps = 15/2247 (1%)
Strand=Plus/Plus
Query 1 AGCATGTCGGCGAAGTTGGAAGGAGATTCTTTACGTAGTAGATAGGCCACCGGTGGTTTC 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AGCATGTCGGCGAAGCTGGAAGGAGATTCTTTACGTAGTAGATAGGCCACAGGTGGTTTC 60
Query 61 AATCTTCCCCAACAACCAGACGAAATCCAACATATATCTGTAACAATCGAAGAAACCCTC 120
||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |||
Sbjct 61 AATCTTCCCCAACAACCAGACGAAATCAAACATAAATCTGTAACAGTCGAAGAAACTCTC 120
Query 121 ACTCTTCAATCCATCAATGGCGTCTCTTCAGATCAGTGGCTCCGTTAAATTCGAGCCGCT 180
|||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 121 ACTCTTTAATTGATCAATGGCGTCTCTTCAAATCAGTGGCTCCGTTAAATTCGAGCCGTT 180
Query 181 CGTTGGATTCAACCGGATCCGCTATTTTCGTCCGATCGGCAGTCTCGGATTCCCTCGTTT 240
|||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||||
Sbjct 181 CGTTGGATTCAACCGGATCCGCCATTTCCGTCCGATCGCCAGTCTCGGATTTCCTCGTTT 240
Query 241 TCGCCGGAGATTCAGTATCGGAC-GTCCATTGTTGCTTCGTCGTTCTTCTTCCTTCTCCG 299
||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 TCGACGGAGATTCAGTATCGGACGGT-CATTGTTGCTTCGTCGTTCTTCTTCCTTCTCCG 299
Query 300 GCGGTAAAATCGGTGAGTCTGATGGTGATGAAAAAGGATTTATCACTGACGCAGAGAGAG 359
| | | || |||||||||| ||| | | | |||||||||| |||||||||||||
Sbjct 300 G-TG-ACTCTC-GTGAGTCTGA---TGA--AGAGA-GATTTATCACAGACGCAGAGAGAG 350
Query 360 ATGGTTCTGGCTCCGTTCTCGGATTTCAGCTCACTCCTCCTGGTGATCAAGAAATC-TTT 418
||||||||||||||||||| || ||||||||||||||||||||||||||| ||| | ||
Sbjct 351 ATGGTTCTGGCTCCGTTCTTGGCTTTCAGCTCACTCCTCCTGGTGATCAACAAA-CAGTT 409
Query 419 AGCACTAGCACAGGAGAAATTACTCATCAAGAAGAGAAGAAAGAGGCTATTGATGAAACA 478
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 410 AGCACTAGCACAGGAGAAATTACACATCATGAAGAGAAGAAAGAGGCTATTGATCAAATT 469
Query 479 GTAATGGCTGATTTTGGTGTACCTGGAAATAGAGCAGTTGAAGAAGGAGCTGTAGAGGTT 538
||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 470 GTAATGGCTGACTTTGGCGTACCTGGAAATAGAGCTGTTGAAGAAGGAGCTGCAGAGGTT 529
Query 539 GGAATTCCGAGTGGGAAAGCTGAAGTTGTTAATAACCTTGTTTTCGTTACATCCGAGGCT 598
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 530 GGGATTCCGAGTGGAAAAGCTGAAGTTGTCAATAACCTTGTTTTCGTTACATCCGAGGCG 589
Query 599 GCTCCTTACTCGAAAACAGGAGGATTAGGAGATGTTTGTGGTTCTTTGCCAATAGCTTTG 658
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 590 GCTCCTTACTCGAAAACAGGAGGATTAGGAGATGTTTGTGGTTCTTTGCCGATAGCTTTA 649
Query 659 GCAGGACGTGGGCACCGTGTTATGGTCGTTTCTCCTCGGTACCTCAATGGAACCGCTGCA 718
|| || |||||||| |||||||||||| |||||||||||||| | |||||||| ||||||
Sbjct 650 GCTGGTCGTGGGCATCGTGTTATGGTCATTTCTCCTCGGTACTTAAATGGAACTGCTGCA 709
Query 719 GACAATAACTATGCTCGGGCTAAGGATTTGGGAATACGTATCACAGTAAATTGCTTTGGT 778
||||| |||||||| ||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 710 GACAAGAACTATGCCCGGGCTAAGGATTTGGGGATACGTGTAACAGTAAATTGCTTTGGT 769
Query 779 GGTTCTCAAGAAGTTTCCTTCTATCATGAATATAGAGATGGTGTTGATTGGGTTTTTGTT 838
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 770 GGTTCTCAAGAAGTTTCCTTCTATCATGAGTATAGAGATGGTGTTGATTGGGTTTTTGTT 829
Query 839 GATCACAAATCCTACCATAGACCTGGTAATCCGTACGGAGATAGTAAAGGAGCCTTTGGT 898
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 830 GATCACAAATCCTACCATAGACCTGGTAATCCCTACGGAGATAGTAAAGGAGCCTTTGGT 889
Query 899 GATAATCAGTTTCGGTTCACGTTACTTTGCCATGCCGCATGTGAAGCCCCTCTTGTGCTG 958
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 890 GACAATCAGTTTCGGTTCACGTTACTTTGCCATGCTGCATGTGAAGCCCCTCTCGTGCTG 949
Query 959 CCTCTTGGAGGGTTCACTTACGGAGAGAAATCTCTCTTCCTTGTCAATGACTGGCATGCC 1018
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 950 CCTCTTGGAGGGTTCACTTATGGAGAGAAATCACTCTTCCTTGTCAATGACTGGCATGCC 1009
Query 1019 AGCCTTGTTCCCATACTTTTGGCCGCAAAGTATCGCCCATACGGAGTTTATAAGGATGCA 1078
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1010 GGCCTTGTTCCCATACTTTTGGCCGCAAAGTATCGCCCATATGGAGTTTATAAGGATGCA 1069
Query 1079 AGAAGCATTCTCATTATACATAACCTCGCCCATCAGGGAGTGGAGCCAGCAGCTACATAC 1138
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1070 AGAAGCATTCTCATTATCCATAACCTCGCTCATCAGGGGGTGGAGCCAGCAGCTACATAC 1129
Query 1139 ACCAACTTGGGATTGCCTTCGGAGTGGTATGGAGCTGTCGGGTGGGTATTTCCAACGTGG 1198
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1130 ACCAACTTGGGATTGCCTTCGGAATGGTATGGAGCAGTCGGGTGGGTATTTCCAACGTGG 1189
Query 1199 GCAAGAACTCATGCCCTTGACACCGGTGAAGCGGTTAATGTTCTCAAGGGTGCTATTGTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GCAAGAACTCATGCCCTTGACACCGGTGAAGCGGTTAATGTTCTCAAGGGTGCTATTGTG 1249
Query 1259 ACCTCTGACCGTATCATTACTGTGAGCCAGGGCTATGCATGGGAAATCACTACTGTCGAA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1250 ACCTCTGACCGTATCATTACTGTGAGCCAGGGCTATGCATGGGAAATCACTACTGTTGAA 1309
Query 1319 GGTGGTTATGGTCTTCAAGATTTGCTTTCTAGTCGGAAAAGTGTTATAAATGGGATCACG 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GGTGGTTATGGTCTTCAAGATTTGCTTTCTAGTCGGAAAAGTGTTATAAATGGGATCACA 1369
Query 1379 AATGGAATTAATGTTGATGAATGGAATCCATCCACGGATGAACACATTCCTTTCCATTAC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AATGGAATTAATGTTGATGAATGGAATCCATCCACGGATGAACACATTCCTTTCCATTAC 1429
Query 1439 TCTGCTGATGATTTCTCCGAGAAGGTCAAATGCAAGATGGCACTACAAAAGGAATTGGGT 1498
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1430 TCTGCTGATGATGTCTCCGAGAAGATCAAATGCAAGATGGCACTACAAAAGGAATTGGGT 1489
Query 1499 CTCCCCATTAGGCCTGAATGTCCTATGATTGGGTTTATAGGAAGACTTGATTACCAGAAG 1558
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1490 CTCCCCATTAGGCCTGAATGTCCTATGATTGGTTTTATAGGAAGACTTGATTACCAGAAG 1549
Query 1559 GGCATTGATCTGATCCAAACCGCTGGTCCTGATCTCATGGTGGATGACATTCAATTCGTC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GGCATTGATCTGATCCAAACCGCTGGTCCTGATCTCATGGTGGATGACATTCAATTCGTC 1609
Query 1619 ATGCTTGGTTCGGGTGACCCAAAATATGAAAGCTGGATGAGAAGTATGGAGGAAACATAC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ATGCTTGGTTCGGGTGACCCAAAATATGAAAGCTGGATGAGAAGTATGGAGGAAACATAC 1669
Query 1679 AGAGACAAATTCCGCGGTTGGGTTGGGTTCAATGTTCCCATCTCTCATCGAATCACAGCC 1738
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1670 AGAGACAAATTCCGTGGTTGGGTTGGGTTCAATGTCCCCATCTCTCATCGAATCACAGCC 1729
Query 1739 GGCTGTGACATTCTTCTCATGCCGTCGAGATTCGAGCCCTGCGGTTTAAATCAGTTATAC 1798
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1730 GGCTGTGACATTCTTCTCATGCCGTCGAGATTCGAGCCCTGTGGTTTAAATCAGCTATAC 1789
Query 1799 GCAATGAGATACGGAACCATTCCAGTTGTTCATGGCACAGGAGGGCTCAGAGATACGGTT 1858
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1790 GCAATGAGATACGGAACCATTCCAGTTGTTCATGGCACTGGAGGACTCAGAGATACGGTT 1849
Query 1859 GAGAATTTCAACCCTTATGCAGAAGGTGGAGCTGGTGCTGGTACAGGGTGGGTCTTCACT 1918
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1850 GAGAATTTCAACCCTTATGCAGAAGGTGGAGCTGGTACTGGTACAGGGTGGGTCTTCACT 1909
Query 1919 CCCTTGTCGAAAGATAGCATGGTGTCGGCCTTGAGGTTGGCTGCTGCAACGTACAGAGAG 1978
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1910 CCCTTGTCGAAAGATAGCATGGTCTCGGCCTTGAGGTTGGCTGCAGCAACGTACAGAGAG 1969
Query 1979 TATAAAGAGTCATGGGAAGGATTGATGAGAAGAGGAATGACACGAAACTATTCTTGGGAA 2038
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1970 TATAAACAGTCATGGGAAGGATTGATGAGAAGAGGAATGACCCGAAACTACTCTTGGGAA 2029
Query 2039 AACGCTGCCGTTCAGTATGAGCAAGTTTTCCAATGGGTTTTCATGGACCCTCCCTACGTC 2098
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 2030 AACGCTGCCGTTCAGTATGAGCAAGTTTTTCAGTGGGTTTTCATGGACCCTCCCTATGTC 2089
Query 2099 AGCTAGACCAAACACAAACCGAATCAAACCGAGTTGGACCGGACCAGACCAGACCTGACC 2158
|||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2090 AGCTAGACCAAACATAAACTGAACCAAACCGAGTTGGACCGGATCAGACCAGACCTGACC 2149
Query 2159 AATCAGATGGAGAATGTGGAACCTCCTCTTCCGGTTATCGAAAATCTATGGTTTTCAACG 2218
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2150 AATCAGATGGAGAGTGTGGAACCTCCTTTTCCGGCTATCGAAAATCTATGGTTTTCAACG 2209
Query 2219 TTTCCACACATTAAACCGTGTATCTAT 2245
|||||||| |||||||||||||||||
Sbjct 2210 TTTCCACA--TTAAACCGTGTATCTAT 2234
Score = 54.7 bits (29), Expect = 4e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 2336 TGATAAGACATTATACGAGTAGACTAATA 2364
|||||||||||||||||||||||||||||
Sbjct 2381 TGATAAGACATTATACGAGTAGACTAATA 2409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117368874210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5