BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489292

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24313.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   424    6e-118


> AT5G24313.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:8276785-8277402 
REVERSE LENGTH=618
Length=618

 Score =  424 bits (229),  Expect = 6e-118
 Identities = 290/319 (91%), Gaps = 6/319 (2%)
 Strand=Plus/Plus

Query  1    ATAGTTGATGAGCAAATAAATTAACTCAATCGATCACCGGATaaaaaaaTGGCTTTTAGG  60
            ||||||||| |||||| |||||||||| |||||||||||||| | |||||||||| || |
Sbjct  4    ATAGTTGATAAGCAAAGAAATTAACTCTATCGATCACCGGATGAGAAAATGGCTTCTA-G  62

Query  61   AAGAATCATCTCTTAATATGTTGTATTCTCCTAGCTATGGTAATGATCGGGCATGCTCAA  120
              |||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||
Sbjct  63   --GAATCATCTCTTAATATGTTGTGTTCTCTTAGCTATGATCATGATCGGGCATGCTCAA  120

Query  121  ACCAATCGGAAACTTCTTGACGATAATGTATCATCCTCTTATTTTCCATCGATGGAATCT  180
            ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct  121  ACCAACCGGAAACTTCTTGACGATAATGTACCATCATCTTATTTTCCATCGATGGAGTCT  180

Query  181  CGTCAAGCTTTTCTTCCTTCTTCTCATCGTTCACTTGGTGCTGAGCATTATGAGAGATCA  240
            ||||| | ||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct  181  CGTCAGGTTTTTCTTCCTTCTTCTCATCGTTCACTTGTTGCTGAGCATTACGACAGATCA  240

Query  241  CCACCTCCACCACCACCAAAAAAGTCATCAGAAGTTGAACCCCAAACTAATGGTGTCTAG  300
            ||||||||||||||||| |||| |  |||||||||||||||||||||| |||||||||||
Sbjct  241  CCACCTCCACCACCACCCAAAA-G--ATCAGAAGTTGAACCCCAAACTGATGGTGTCTAG  297

Query  301  ACCATTGAGTTATGATGAG  319
            |||||||||| ||| ||||
Sbjct  298  ACCATTGAGTGATGGTGAG  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25518946676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5