BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489293
Length=545
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24314.2 | Symbols: PTAC7 | plastid transcriptionally active... 699 0.0
> AT5G24314.2 | Symbols: PTAC7 | plastid transcriptionally active7
| chr5:8277700-8279194 FORWARD LENGTH=655
Length=655
Score = 699 bits (378), Expect = 0.0
Identities = 484/531 (91%), Gaps = 24/531 (5%)
Strand=Plus/Plus
Query 1 GTGTAGCCATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTGCTGATA 60
||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 43 GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTATTGATA 102
Query 61 CAAGAAGCGGGAATTTGCGCTGCACATTTCACTCTCAGGTTTCTTGTGGGATTCAGAGAG 120
| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 103 CGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGGTTTCTTGTGGGATTCAGAGAG 162
Query 121 ATGATAATGGACGCCGTGTTTGGCGGA-G-G---A---G---G------AC-----A--T 156
||||||||||||||||||||||||||| | | | | | || | |
Sbjct 163 ATGATAATGGACGCCGTGTTTGGCGGAGGAGAACATTGGTAAGTACTAAACTTGATATTT 222
Query 157 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAGGAAC 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 223 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAAGAAC 282
Query 217 AAGTAAGGAAGATAAGAGAAGTTGGGAAAGTAATGACAATGGACATAGAGCAGCTGCTTT 276
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 283 AAGTAAGGAAGATAAGAGAAGTTGGGAAGGTAATGACAATGGACATAGAGCAGCTTCTTT 342
Query 277 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGTGTAGCAGCTGAAGCAACAGAGTACG 336
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 343 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGCGTAGCAGCTGAAGCAACAGAGTACG 402
Query 337 TGGaaaaaaaCAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTGAGCA 396
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 403 TGGACAAGAACAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTAAGCA 462
Query 397 ACCGCGTGAACGATCTCGGGTTTGATCGCCCTGAGGCTTATATAGAAGCTGATCCTTACA 456
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 463 ACCGTGTGAACGATCTCGGCTTTGATCGCCCTGAGGCTTATGTAGAAGCTGATCCTTACA 522
Query 457 AGCCCGGTCCTGGCTATTTGTTGGAGTATTACACATGAGATATTATTACAA 507
| |||||||||||||||||||||||||| ||||| ||| ||||||| ||||
Sbjct 523 AACCCGGTCCTGGCTATTTGTTGGAGTACTACACTTGATATATTATAACAA 573
Score = 65.8 bits (35), Expect = 4e-10
Identities = 38/39 (97%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 508 TTGTATTACC-AAACCAAATCAATGCATTCACAGCTTTG 545
|||||||||| ||||||||||||||||||||||||||||
Sbjct 605 TTGTATTACCAAAACCAAATCAATGCATTCACAGCTTTG 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26121756440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5