BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489297
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24330.1 | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-REL... 1637 0.0
> AT5G24330.1 | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELATED
PROTEIN 6 | chr5:8295147-8297068 REVERSE LENGTH=1219
Length=1219
Score = 1637 bits (886), Expect = 0.0
Identities = 1050/1125 (93%), Gaps = 27/1125 (2%)
Strand=Plus/Plus
Query 1 ACCTCGGTC-AAATCTCACATTTATAATCTCTCA--CTCTCTCTTTCTCTGGT-AA--AA 54
||||||| | | |||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 2 ACCTCGG-CTAGATCTCACATTTATAATCTCTCACTCTCTCTCTTTCTCTGGTAAATCAA 60
Query 55 T--G-GT-AG-CT-GT-GC---GA--CGAAGAAGAACCCAAGCGTCAAACCCTAGATCCG 102
| | || || | || || || ||||| ||||| ||||||||||||||||||||||
Sbjct 61 TAAGTGTAAGAATGGTGGCTGTGAGGCGAAGGAGAACACAAGCGTCAAACCCTAGATCCG 120
Query 103 AACCACCGCAGCAATACATGGCGGA--A-GATTCCGATTCCGATTGGGATACAGTCTGCG 159
||||| | | |||| ||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 121 AACCA-C-C-GCAACACATGTCGGATCATGATTCCGATTCCGATTGGGATACAGTCTGCG 177
Query 160 AAGAATGCAGCTCCGGGAAACAACCTGCAAAGCTCCTTCTTTGCGACAAATGCGATAAAG 219
|||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 178 AAGAATGCAGTTCCGGTAAACAACCAGCAAAGCTGCTTCTTTGCGACAAATGCGATAAAG 237
Query 220 GGTTTCAT-TTATTTTGTCTCAGACCAATCCTCGTTTCAGTTCCCAAAGGCTCTTGGTTC 278
|||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GGTTTCATCTT-TTCTGTCTCAGACCGATCCTCGTTTCAGTTCCCAAAGGCTCTTGGTTC 296
Query 279 TGCCCTTCTTGTTCCAAACACCAGATCCCTAAATCTTTCCCTCTTGTTCAGACTAAGATC 338
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 297 TGCCCTTCTTGTTCCAAACATCAGATCCCTAAATCTTTCCCTCTTATTCAGACTAAAATT 356
Query 339 ATAGATTTCTTCCGGATTAAGCGGTCACCAGACTCATCTCAAATCTCAAATTCTTCAGAT 398
|||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 357 ATAGATTTCTTCCGGATTAAGCGGTCTCCAGATTCATCTCAAATCTCAAGTTCTTCAGAT 416
Query 399 AGTATTGGGAAGAAACGGAAAAAGAATAGCTTGGTGATGTCAAAGAAGAAGAGGAGGCTT 458
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 417 AGTATTGGGAAGAAACGGAAAAAGACTAGCTTGGTGATGTCAAAGAAGAAGAGAAGGCTT 476
Query 459 CTTCCGTATAATCCTAGCAATGATCCTCAAAGGAGACTTGAGCAAATGGCGTCTCTTGCT 518
||||| || |||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 477 CTTCCATACAATCCTAGCAATGATCCTCAAAGGAGGCTAGAGCAAATGGCGTCTCTGGCC 536
Query 519 ACTGCGTTGAGAGCTTCCAACACTAAGTTTAGCAATGAGCTTACTTATGTATCTGGAAAG 578
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 537 ACTGCGTTGAGAGCTTCCAACACCAAGTTCAGCAATGAGCTTACTTATGTATCTGGAAAG 596
Query 579 GCTCCAGGATCTGCAAATCAAGCTGCTTTTGAGAAAGGAGGCATGCAGGTTCTATCTAAA 638
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCTCCAAGATCTGCAAACCAAGCTGCTTTTGAGAAAGGAGGCATGCAGGTTCTATCTAAA 656
Query 639 GAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATGGACCTCGGTGAATGCCCGCCA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATGGACCTCGGTGAATGCCCGCCA 716
Query 699 CTTATGGTCGTCTTCGATCCTTATGAAGGGTTCACAGTAGAGGCGGACAGGTTTATAAAA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CTTATGGTCGTCTTCGATCCTTATGAAGGGTTCACAGTAGAGGCGGACAGGTTTATAAAA 776
Query 759 GACTGGACCATAATCACAGAGTACGTTGGAGATGTTGATTATTTGAGCAACAGAGAAGAT 818
|||||||| || ||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 777 GACTGGACAATTATCACAGAGTATGTTGGAGATGTTGATTATCTGAGCAATAGAGAAGAT 836
Query 819 GACTATGATGGAGACAGCATGATGACTCTACTTCATGCCTCTGATCCTTCGCAATGTCTC 878
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GACTATGATGGAGACAGTATGATGACTCTACTTCATGCCTCTGATCCTTCGCAATGTCTC 896
Query 879 GTTATTTGTCCTGACAGACGCAGTAACATTGCGCGGTTTATCAGCGGCATCAACAATCAC 938
|| ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 897 GTAATTTGCCCTGACAGACGCAGTAACATCGCCCGGTTCATCAGTGGCATCAACAATCAC 956
Query 939 TCTCCAGAAGGAAGGAAGAAGCAGAACCTGAAGTGTGTGAGATTCAACATCAACGGAGAA 998
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 TCACCAGAAGGGAGGAAGAAGCAGAACCTGAAGTGTGTGAGGTTCAACATCAACGGAGAA 1016
Query 999 GCTAGGGTTCTTCTCGTAGCTAATAGAGACATATCTAAAGGGGAAAGATTGTATTATGAT 1058
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1017 GCTAGGGTTCTTCTCGTAGCTAATAGAGACATATCGAAAGGGGAAAGATTGTATTATGAT 1076
Query 1059 TACAACGGTTATGAACATGAGTATCCAACTGAACATTTTGTATAA 1103
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 TACAACGGATATGAACATGAGTATCCAACTGAACATTTTGTATAA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55270800045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5