BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489298
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24340.1 | Symbols: | 3'-5' exonuclease domain-containing p... 2416 0.0
> AT5G24340.1 | Symbols: | 3'-5' exonuclease domain-containing
protein | chr5:8297305-8300374 FORWARD LENGTH=1759
Length=1759
Score = 2416 bits (1308), Expect = 0.0
Identities = 1462/1535 (95%), Gaps = 15/1535 (1%)
Strand=Plus/Plus
Query 2 ATGGAAACCAATCTAAAGATCTATCTAGTTTCATCCACCGACTCGGCCGAGTTCACTCAC 61
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 24 ATGGAGACCAATCTAAAGATCTATCTAGTTTCATCCACCGACTCGTCCGAGTTCACTCAC 83
Query 62 CTGAAATGGTCTTTCACTCGTTCTACGATCATCGCCTTAGACGCCGAATGGAAACCACAA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 84 CTGAAATGGTCTTTCACTCGTTCTACGATCATCGCCTTAGACGCCGAATGGAAGCCACAA 143
Query 122 CACTCCAATACGTCGTCGTTTCCGACCGTCACTCTCCTCCAAGTCGCATGCCGACTCAGT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CACTCCAATACGTCGTCGTTTCCGACCGTCACTCTCCTCCAAGTCGCATGCCGACTCAGT 203
Query 182 TACGCCACGGATGATGATGAAGTCTCCGATGTCTTCCTCATTGACTTGACTTCGATTCAT 241
||||||| | ||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 204 CACGCCAC----G--GAT---GTCTCCGATGTCTTCCTCATTGATTTGAGTTCGATTCAT 254
Query 242 CTTCCGTCTGTGTGGGAGCTATTGAATGACATGTTCGTGTCGCCGGATGTGT-TGAAATT 300
||||| || || |||||||| |||||||| |||||||||||||||||||| | ||||| |
Sbjct 255 CTTCCATCGGTTTGGGAGCTGTTGAATGATATGTTCGTGTCGCCGGATGT-TCTGAAACT 313
Query 301 AGGGTTTCGGTTTAAACAGGATTTGGTTTACTTGTCTTCGACATTTACTCAACATGGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AGGGTTTCGGTTTAAACAGGATTTGGTTTACTTGTCTTCGACATTTACTCAACATGGATG 373
Query 361 TGAAGGTGGATTCCAAGAGGTGAAACAATACTTGGATATTATAAGCATATACAATTATCT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 374 TGAAGGTGGATTCCAAGAGGTGAAACAATACTTGGATATTACAAGCATATACAATTATCT 433
Query 421 GCAACATAAGCGGTTTGGGAGAAAGGCCCCAAAGGATATCAAGAGCTTGGCAGCTATATG 480
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 434 GCAACATAAGCGGTTTGGGAGAAAGGCGCCAAAGGATATCAAGAGCTTGGCTGCTATATG 493
Query 481 TAAGGAAATGCTGGACATCTCTCTCTCAAAGGAACTTCAATGTAGTGATTGGTCATATCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TAAGGAAATGCTGGACATCTCTCTCTCAAAGGAACTTCAATGTAGTGATTGGTCATATCG 553
Query 541 TCCTCTTACAGAAGAACAGAAACTATACGCTGCCACAGATGCTCACTGCTTGCTCCAGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 554 TCCTCTTACAGAAGAACAGAAACTATACGCTGCCACAGATGCTCACTGCCTGCTCCAGAT 613
Query 601 ATTCGATGTATTTAAGGCGCATCTTGTTGAAGGAATCACAGTGCAAGATTCT-AGAGAGA 659
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 614 ATTCGATGTATTTGAGGCGCATCTTGTTGAAGGAATCACAGTGCAAGAT-CTTAGAGTGA 672
Query 660 AAAATGTTGGCTTACAAGAAATTCTTACTGGATCAGATTATACCAGTAAGATTGTCACGG 719
|||||||||||||||||||||||| |||| ||| || |||| ||||||||||||||| |
Sbjct 673 TAAATGTTGGCTTACAAGAAATTCTGACTGAATCGGACTATAGCAGTAAGATTGTCACAG 732
Query 720 CCAAACTTTGCAAGGCTACAGATGTAATCAGATCAATGTCGGAAAATGGTCAAAACATAG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TCAAACTTTGCAAGGCTACAGATGTAATCAGATCAATGTCGGAAAATGGTCAAAACATAG 792
Query 780 CCAATGGAGTGGTTTCTAGAAAAACAACACTAAACACGATGCCGATGGATGAGAATCTGT 839
|||||||||||||| | |||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 793 CCAATGGAGTGGTTCCAAGAAAAACGACACTAAACACGATGCCAATGGATGAGAATTTGT 852
Query 840 TGAAGATTGTCAGGAAGTATGGAGAAAGGATCCTGTTGAAGGAATCTGATCTTCTACCAA 899
|||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct 853 TGAAGATTGTCAGGAAGTTTGGAGAACGGATCCTGTTGAAGGAGTCTGATCTTCTACCAA 912
Query 900 AGAAACTCAAGAAGAAAACAAGAAGACGTGTCTCCTCAAGCTCTATGAACACAAATAAGC 959
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 913 AGAAACTTAAGAAGAAAACAAGAAGACGTGTCGCCTCAAGCACTATGAACACAAATAAGC 972
Query 960 ATTTGGTCTGTTCTGCAGACTGGCAAGGCCCACCCCCATGGGAC-CTATCTTTAGGCGGT 1018
| |||||||||||||| ||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 973 AGTTGGTCTGTTCTGCGGACTGGCAAGGTCCACCGCCATGGGACTC-ATCTTTAGGCGGT 1031
Query 1019 GATGGCTGCCCTAAATTTCTTTTGGATGTGATGGTTGAAGGTTTGGCGAAACATCTACGT 1078
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GATGGCTGCCCTAAATTTCTATTGGATGTGATGGTTGAAGGTTTGGCGAAACATCTACGT 1091
Query 1079 TGTGTGGGGATTGATGCTGCAATTCCACACTCAAAGAAGCCGGATTCAAGGGAGTTGCTT 1138
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1092 TGTGTGGGGATTGATGCTGCAATCCCACACTCAAAGAAGCCGGATTCAAGGGAGTTGCTT 1151
Query 1139 GATCAAGCATTCAAAGAGAAGAGAATTCTATTGACAAGAGATACAAAATTGTTGAGACAC 1198
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 1152 GATCAAGCATTCAAAGAGAACAGAGTTCTATTAACAAGAGATACAAAATTGTTGAGACAC 1211
Query 1199 CAAGATTTGGCAAAGCACCAAATATATAGAGTCAAGAGCCTTCTAAAAAATGAGCAGCTA 1258
|| |||||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||
Sbjct 1212 CAGGATTTGGCAAAGCATCAAATATATCGAGTAAAGAGTCTTCTTAAAAATGAGCAGCTA 1271
Query 1259 CTTGAGGTGATAGAGACTTTCCAGCTAAAGATCAGCGGAAATCAGCTGATGTCAAGATGT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1272 CTTGAGGTGATAGAGACTTTCCAGCTAAAGATCAGCGGAAATCAGCTGATGTCCAGATGT 1331
Query 1319 ACGAAATGCAATGGGAAATTTATTCAGAAACCTCTAAGCATTGAAGAAGCTATTGAAGCA 1378
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 ACGAAGTGCAATGGGAAATTTATTCAGAAACCTCTAAGCATTGAAGAAGCTATTGAAGCA 1391
Query 1379 GCAAAGGGTTTCCAAAGAATACCCAACTGCTTATTTAACAAAAATTTAGAGTTTTGGCAA 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 GCAAAGGGTTTCCAAAGAATACCCAACTGCTTATTTAACAAAAATTTAGAGTTTTGGCAG 1451
Query 1439 TGCATGAACTGCCATCAGCTATACTGGGAGGGAACCCAGTATCATAACGCAGTCCAGAAG 1498
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1452 TGCATGAACTGCCATCAACTATACTGGGAGGGAACTCAGTATCATAACGCAGTCCAGAAG 1511
Query 1499 TTCATGGAAGTATGTAAGTTGAGTGAGTGATTCAC 1533
|||||||||||||| ||||||||||||||||||||
Sbjct 1512 TTCATGGAAGTATGCAAGTTGAGTGAGTGATTCAC 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5