BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489300
Length=2869
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24360.2 | Symbols: IRE1-1 | inositol requiring 1-1 | chr5:8... 2604 0.0
> AT5G24360.2 | Symbols: IRE1-1 | inositol requiring 1-1 | chr5:8316440-8319892
FORWARD LENGTH=3007
Length=3007
Score = 2604 bits (1410), Expect = 0.0
Identities = 1604/1695 (95%), Gaps = 24/1695 (1%)
Strand=Plus/Plus
Query 1184 TCACAGATATTATTGATGGAAGCACTACACAGGCAGGCTTTGCTAGCAAATTTTCTGGtt 1243
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1312 TCACAGATATTATTGATGGAAGCACGAAACAGGCAGGCTTTGCTAGCAAATTTTCTGGTT 1371
Query 1244 tgattgttctacttttcggcttttgtgttactatgctttctttttgcggccttttctttt 1303
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1372 TGATTGTTCTAATTTTCGGCTTTTGTGTTACTATGCTTTCGGTTTGCGGCCTTTTCTTTT 1431
Query 1304 gCCGATTAAGACAGAGCATGCGGATCAAGGATCCTTATGTATCGGAAGTTCCAATCGCGA 1363
|||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||
Sbjct 1432 ACCGATTAAGACAGAGCATTCGGATCAAGGAACCATATGTATCTGAAGTGCCAATCGCGA 1491
Query 1364 TACCAAAGAAGAAAAAGTCCAAGAAAAATGG---------GAC---TCACAAGAAAGAGA 1411
||| ||||||||||| |||||||||||||| | | ||||||||||||||
Sbjct 1492 CACCGAAGAAGAAAAAATCCAAGAAAAATGGTACTACAAAGGCGGTTCACAAGAAAGAGA 1551
Query 1412 ACGGGCTTATATCTGGAGGGAACAAACATCCCTCTAATGAAGAGAATGATAAGAGATTAC 1471
| || |||||||||||||||||||| |||||||| |||| |||||||| ||||||||||
Sbjct 1552 ATGGATTTATATCTGGAGGGAACAAAGATCCCTCTCATGAGGAGAATGAGAAGAGATTAC 1611
Query 1472 TTACTACTTTCCCTGGCCTCAATAATAATAGTTCAGCAGAAGGATATAGGGTTGGTAAAC 1531
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1612 TTACTGCTTTCCCTGGCCTC---AATAATAGTTCAGCAGAAGGATATAGGGTTGGTAAAC 1668
Query 1532 TGTTTGTCTCCAACAAGGAGATTGCTAAAGGGAGTAATGGAACTGTTGTGCTTGAGGGAT 1591
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1669 TGTTTGTCTCCAACAAGGAGATTGCTAAAGGGAGCAATGGAACTGTTGTTCTTGAGGGAT 1728
Query 1592 CCTATGAAGGTCGTCTTGTAGCGGTTAAGCGTCTAGTACAATCACATCATGATGTGGCTC 1651
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1729 CCTATGAAGGTCGTCTTGTAGCGGTTAAGCGTCTAGTACAATCACACCATGATGTGGCTC 1788
Query 1652 AGAAGGAGATTTTGAATCTCATGGCCTCGGACAAACATCCAAATATTGTCCGCTGGTACG 1711
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1789 AGAAGGAGATTTTGAATCTCATGGCCTCAGACAAACATTCAAATATTGTCCGCTGGTACG 1848
Query 1712 GGGTTGACCAGGACGAACATTTTATCTATATTTCATTAGAACGGTGTGCTTGTAGCTTAA 1771
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1849 GGGTTGACCAGGACGAACATTTTATCTATATTTCATTGGAACTGTGTGCTTGTAGCTTAA 1908
Query 1772 ACGATCTCATCTATGCATCCTCTGCACTGCTTGAGAGTCCAGTGGCTTCAAGTAGTATAC 1831
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 1909 ACGATCTCATCTATGCATCATCTGCACTACTTGAGAGTCCAATGGCTTCAAGTAGTATAC 1968
Query 1832 AACCGATTCAGAGAAACCCAATCTTTGAAAATGGCAAGGGAGTTGAGCTATGGAAGGAAA 1891
| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1969 ATTCGATTCAGATAAACCCAATCTTTGAGAATGGCAAGGGAGTTGAGCTATGGAAGGAAA 2028
Query 1892 ACGGACATCCGTCTCCTGTTTTGTTGAAGTTAATGAGTGATATAGTTGCTGGTCTAGTTC 1951
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2029 ACGGACATCCTTCTCCTGTTTTGTTGAAGTTAATGAGGGATATAGTTGCTGGTCTAGTTC 2088
Query 1952 ATTTGCATGATATTGGAATCGTACATCGGGATCTAAAACCTCAAAATGTGTTGATTGTTA 2011
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2089 ATTTGCATGATATTGGAATCGTACATCGAGATCTAAAGCCTCAAAATGTGTTGATTGTTA 2148
Query 2012 AGAACTCATCTGTATGTGCAAAGCTATCAGATATGGGTATTAGCAAGCGCTTGCCAGCCG 2071
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2149 AGAACTCATCTCTATGTGCAAAGCTATCAGATATGGGTATTAGCAAGCGCTTGCCAGCCG 2208
Query 2072 ACACAAGTGCCTTGACTAGAAACTCAAC-----T-GGTTCTGGAAGTTCTGGGTGGCAAG 2125
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2209 ACACAAGTGCCTTGACTAGAAACTCAACTGGTTTAGGTTCTGGAAGTTCTGGGTGGCAAG 2268
Query 2126 CACCTGAACAACTCCGCAATGAACGACAAACAAGAGCCGTTGATCTCTTCAGTTTAGGGT 2185
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2269 CACCTGAACAACTCCGCAATGAACGACAAACAAGAGCGGTTGATCTCTTCAGTTTAGGGT 2328
Query 2186 GTGTTCTATTTTTCTGTATGACTGCAGGTAAACATCCTTACGGAGACAATTATGAGAGGG 2245
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2329 GTGTTCTGTTTTTCTGTATGACTGGAGGTAAACATCCTTACGGAGACAATTATGAGAGGG 2388
Query 2246 ACGTAAACGTTTTGAATGATCGAAAA-GATCTTTTCTTGATCGAGAGTCTTCCAGAAGCT 2304
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2389 ACGTAAACGTTTTGAATGATC-AAAAGGATCTTTTCTTGATCGAGAGTCTTCCAGAAGCT 2447
Query 2305 GTTCATCTTCTCTCTGGTCTCCTGAACCCGGATCCAAATTTGAGACCGAGAGCACAAGAA 2364
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2448 GTTCATCTTCTCACTGGTCTCCTAAACCCGGATCCAAATTTGAGACCGAGAGCACAAGAT 2507
Query 2365 GTTCTGCATCATCCATTGTTCTGGAACTCTGACATGAGACTGTCTTTCCTCCGGGATGCA 2424
||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2508 GTTATGCATCATCCATTGTTCTGGAACTCTGACATGAGACTGTCTTTTCTTCGGGATGCA 2567
Query 2425 AGTGATAGAGTCGAATTGGAAAACCGAGAGGAAGGCTCACAGCTCTTGGCTGCACTTGAA 2484
|| |||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2568 AGCGATAGAGTTGAACTGGAAAACCGAGAAGAAGGTTCACAGCTCTTGGCTGCACTTGAA 2627
Query 2485 AGCACAGCAGCGGTTACATTAAACGGGCGGTGGGATGAGAAACTGGATAGCATATTCCTA 2544
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2628 AGCACAGCAGCGGTTACTTTAAATGGGCGGTGGGATGAGAAACTGGATAGCATATTCCTA 2687
Query 2545 GACAATATCGGGCGTTACAGGCGGTACAAGTTTGACAGCATCCGCGATTTGTTACGGGTC 2604
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2688 GACAATATCGGGCGATACAGGCGGTACAAGTTTGACAGCATCCGCGATTTGTTACGGGTC 2747
Query 2605 ATAAGGAACAAACTGAATCACTATAGAGAGCTTCCAAAAGAATTACAGGAACTACTTGGG 2664
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2748 ATACGGAACAAACTGAATCACTATAGAGAGCTTCCAAAAGAATTACAGGAACTACTTGGG 2807
Query 2665 AGTGTACCAGAAGGGTTTGAGAGGTACTTCTCAAGCAGGTTCCCAAAACTGTTGATTCAG 2724
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2808 AGTGTACCTGAAGGGTTCGAGAGGTACTTCTCTAGCAGGTTCCCAAAACTGTTGATTCAG 2867
Query 2725 GTTTATACAGTTTTATTTGATTACTGTAACAATGAAGAGTTCTTTTTCAAGTACTCTAAG 2784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2868 GTTTATACAGTTTTATTTGATTACTGTAACAATGAAGAGTTCTTTTTCAAGTACTCTAAG 2927
Query 2785 ACCACTGTATTTTAGGATTATTTTCTTCTGTTGACTCTCTCTGTATAATAGGGATTTACT 2844
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 2928 ACCACTGTATTCTAGGATTCTTTTCTTCTGTTGGCTCTCTCTGTATAATAGGGATTTACT 2987
Query 2845 TAATAAAGTGCTACA 2859
||||||| ||||||
Sbjct 2988 -AATAAAGAGCTACA 3001
Score = 1195 bits (647), Expect = 0.0
Identities = 801/872 (92%), Gaps = 24/872 (3%)
Strand=Plus/Plus
Query 314 GAGAATCTGGTTATGTGTTGGTTTCTACGGTAGATGGATCGATATCTTTGGTGGATATGT 373
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GAGAATCTGGTTATGTATTGGTTTCTACGGTAGATGGATCGATATCTTTGGTGGATATGT 486
Query 374 CCTCTCAGAAGCTGGATTGGACATTTCATACCAATGAGCCGATATATTCGTCTTACCAAG 433
| || |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 487 CTTCACAGAAGCTAGATTGGACATTCCATACCAATGAGCCTATATATTCGTCTTACCAAG 546
Query 434 CTCCTCATTATCATTATACCACTGATGAGGAACGTGCCTCGGCGCTTGGTGATGACTTTT 493
|||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 547 CTCCTCATTATCATTACACCACTGATGAAGAACGTTCCTCGGTGCTTGGTGATGACTTTT 606
Query 494 ACATGGATTGTGATAAAGATTGGCGTCTTTTCAATTCCTCTATGCGAAAAGGAAAACGCG 553
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 607 ACATGGATTGTGATAAAGATTGGCGTCTTTACAATTCCTCTGTACGAAAAGGAAAACGCG 666
Query 554 TAAATGAGATAGTGGATGCTTCGGAGTTCATTGGAACACTGCCATACACATCGACGGATA 613
| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 667 TTAATGAGATAGTGGATGCTTCGGAGTTTATTGGTACGTTGCCATACACATCGACGGATA 726
Query 614 GGATTGTTTTGGGGAAAAAGGACACATCTGTATTTCTCTTGGATTGGAAGACTGGGAAAT 673
|||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 727 GGATTGTTTTAGGTAAAAAGGATACATCTGTGTTTCTCTTGGATTGGAAGACTGGGAAGT 786
Query 674 TAGTTAAGAGGTATAGAATGGACGAGCTGTATTCTAATACAGTCGTTGAAAATGATAAAG 733
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 787 TAGTTAAGAGGTATAGAATGGACGAGCTGTATTCTAATACAGTTGTTGAAAATGATAAAG 846
Query 734 AGAAGGCTATTGTTTTGTCTAAAGAAGCTCCGATACTATTTGGATCAGGGTTTAAGGAAT 793
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 847 AGAAGGCTATTGTTTTGTCTAAAGAAGCTCCTTTACTATTTGGATCGGGGTTTAAGAAAT 906
Query 794 CGGAAGATCTTCCTGAGCTGGTTTATATTGAGAGAAAAGATTTTAAAATCCAATGTATAT 853
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 907 CGGAAGATTTTCCTGAGCTGGTTTATATTGAGAGAAAAGATTTTAAAATACAATGTATAT 966
Query 854 CAAAGTTTGGAGATGTTTTGTGGAGTGTTTCTTATGCTAAGATGGAAGCTAAACTACAAA 913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 967 CAAAGTTTGGAGATGTTTTGTGGAGTGTTTCTTATGCTAAGATGGAAGCTAAACTACAGA 1026
Query 914 ACCATGAGAGCGTACACCTCATGGGTGGGTTATCATCATCAGATGGTATTCCTATTAGAA 973
| |||||||||||||| |||| |||||||||||||||||| ||| |
Sbjct 1027 ATCATGAGAGCGTACAGTTCATCAGTGGGTTATCATCATCAG-TGG-----------G-- 1072
Query 974 CTTCTTGGGGAAAAAACCATTTCCCGCTATCCTATACGACAAGTGTTCCTGTGGTACAGT 1033
| ||||| ||| |||||||| || |||||||||||||||||| |||||||||
Sbjct 1073 ------G---AAAAA-CCAGTTCCCGCTGTCTTATACGACAAGTGTTCCTATGGTACAGT 1122
Query 1034 TACGTAATGTTAACTATGAAACACTGTTTCCGAGACTTGGTTTTCTAGACGAGGCGTTGT 1093
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TACGTAATGTTAAGTATGAAACACTGTTTCCGAGACTTGGTTTTCTAGACGAGGCGTTGT 1182
Query 1094 ATCTTCCCTTTCAAGATAGAAAACCTAATCGGTTGGCTCCTGGAGATGGGAATCAGTTGG 1153
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1183 ATCTTCCGTTTCAAGATAGAAAACCTAATCAGTTGGCTATTGGAGATGGGAATCAGTTGA 1242
Query 1154 CACTTCCGAGCAATAAAGAGGCTGAAGAAGTC 1185
|||||||| |||||||||||||||||||||||
Sbjct 1243 CACTTCCGGGCAATAAAGAGGCTGAAGAAGTC 1274
Score = 414 bits (224), Expect = 2e-114
Identities = 289/319 (91%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 1 ATTTTATTTCCGACAGCAAAATTTGCGAAGTCAAATCGCGTAATCTCTAGTTCAGTTTTG 60
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 4 ATTTCATTTCCGACAGC-AAATTTGCGAAGTCAAATCGCGTAATC-AAACTTCAGTTTTG 61
Query 61 TTCCG-TTTCGAAATCTCAATTCCGTGTAGGAGATCTCCATAAACCCTAACCCCCTCAAG 119
||||| ||||||| |||| ||| ||| ||||||||||||||||||||||| |||||| ||
Sbjct 62 TTCCGTTTTCGAATTCTCCATTTCGTATAGGAGATCTCCATAAACCCTAATCCCCTC-AG 120
Query 120 -GTGCAGCCAAAATCCGATTGTG-TTTTCTCTATTCAAAAAAGAAA-TTTCATGGTTTTC 176
||||| | || || |||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 121 AGTGCATCTAACATTCGATTGTGTTTTTCTCTATTCAAAGAAGAAATTTTCATGGTTTTC 180
Query 177 TAAAGAGATGAGAGGATCTGCACTACTTGATTTGAT-TCTGTTCCTGCTCGTATCTCCAT 235
||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 181 TAAAGCGATGAGAGGATCTGCACTACTTGATTTGATAT-TGTTCCTTCTCGTATCTCCAT 239
Query 236 TAGCACACAGCTTCAAAGGATCTGAAATCTCCAAATTCTATGACAAATCCATTTCCAATC 295
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 240 TAGCACACAGCTTCAAAGGATCTGAAATCTCCAAGTTCTATGACAAATCTATCTCCAATC 299
Query 296 AAATCTCTCAGCCCGATCG 314
|||||||||| |||||||
Sbjct 300 AAATCTCTCAATCCGATCG 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142574452006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5