BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489303
Length=2342
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24380.1 | Symbols: YSL2, ATYSL2 | YELLOW STRIPE like 2 | ch... 3502 0.0
> AT5G24380.1 | Symbols: YSL2, ATYSL2 | YELLOW STRIPE like 2 |
chr5:8323895-8326705 FORWARD LENGTH=2378
Length=2378
Score = 3502 bits (1896), Expect = 0.0
Identities = 2167/2296 (94%), Gaps = 25/2296 (1%)
Strand=Plus/Plus
Query 1 cttcttcttcttcttcttcCATCTTACGCCAAACCTCGAGTCTGCGAATCATTCGATTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 CTTCTTCTTCTTCTTCTTCCATCTTACGCCAAACCTCGAGTCTGCGAATCATTCGATTCT 75
Query 61 CAGATTGGCATCTTTTCCACGAATT-GC-CGGATCAAAACATTGTTTCCGTGTACGAGAA 118
|||||| |||| ||||| |||||| || || ||||||| |||||||||||||| ||||
Sbjct 76 CAGATTCGCATATTTTCTTCGAATTCGCTAGGCTCAAAACGTTGTTTCCGTGTACAAGAA 135
Query 119 GCAACCTAACGATTTGTGG-CAGCTTGAATTCCAGAGAT-CTCTAGGTTATTGAGAtt-t 175
|||||||||||||||| || ||| |||| |||| | | |||||||||||||||
Sbjct 136 GCAACCTAACGATTTGGGGCCAG-GTGAA-GGAAGAGCTGATTTAGGTTATTGAGATTCG 193
Query 176 ttttCCACAAATGGAGAACGAGAGGGTTGAGAGAGAACAGAACCAATTTCAAGAAGACGA 235
||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 194 TTTTCTTCAAATGGAAAACGAAAGGGTTGAGAGAGAACAGAGCCAATTTCAGGAAGACGA 253
Query 236 GTTTATCGATTCGAGAAAACCACCGCCATGGAGGAAACAGATCACGGTTCGAGCCATCGT 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 254 GTTTATCGATTCGAGAAAACCACCGCCATGGAGGAAACAGATCACGGTTCGAGCGATCGT 313
Query 296 CGCGAGTTTATTGATAGGGATTGTCTACAGTGTGATCTGTCTGAAGCTGAATCTAACGAC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CGCGAGTTTATTGATAGGGATTGTCTACAGTGTGATCTGTCTGAAGCTGAATCTAACGAC 373
Query 356 AGGACTCGTACCGAATCTAAACATCTCATCAGCTCTCTTGGCTTTCGTCTTT-CTCAAAT 414
|||||||||||||||||| |||||||||||||||||||||||||| || ||| |||||||
Sbjct 374 AGGACTCGTACCGAATCTCAACATCTCATCAGCTCTCTTGGCTTTTGT-TTTCCTCAAAT 432
Query 415 CTTGGACCAAAGTTCTTCAAAAAGCCGGAATCGCCACGACGCCTTTCACACGTCAAGAGA 474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CATGGACCAAAGTTCTTCAAAAAGCCGGAATCGCCACGACGCCTTTCACACGTCAAGAGA 492
Query 475 ATACTATTGCTCAAACTTGTGCTGTTGCTTGTTACAGCATCTCCCTTGCAGGTGGATTTG 534
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 493 ACACTATTGCTCAAACTTGTGCTGTTGCTTGTTACAGCATCTCTCTTGCAGGTGGATTTG 552
Query 535 CATCGTATTTGTTGGGTTTGAATAGACGAACTTACGAGCTTACGGGAGTGAACACTGAAG 594
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 553 CATCGTATTTGTTGGGTTTGAATAGACGAACTTACGAGGAGACAGGAGTGAACACCGAAG 612
Query 595 GAAACAATCCTCGTGGTATAAAAGAGCCTGGTGTTGGATGGATGACATCATTCCTCTTTG 654
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 613 GAAACAATCCTCGTGGTATAAAAGAGCCCGGTGTTGGATGGATGACATCATTCCTCTTCG 672
Query 655 TCACTAGTTTCATTGGACTAGTTGTATTGGTACCTCTTCGAAAGGTGATGATTATAGACT 714
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TTACTAGCTTCATTGGACTTGTTGTATTGGTACCTCTTCGAAAGGTGATGATTATAGACT 732
Query 715 ACAAGCTAACGTATCCGAGTGGAACAGCAACAGCTGTTCTTATAAATGGATTTCATACTA 774
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 733 ACAAGCTAACTTATCCTAGTGGAACGGCAACAGCTGTTCTTATAAATGGATTTCATACTA 792
Query 775 GCAAAGGAAATAAGACAGCCAAGAAACAGATTCGCGGGTTTATAAAATCGTTTGGTTTGA 834
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GCAAAGGAGATAAGACAGCCAAGAAACAGATTCGCGGGTTTATAAAATCGTTTGGTTTGA 852
Query 835 GTTTCTTTTGGGCATTCTTTGGATGGTTTTATTCAGGTGGTGACAAATGCGGATTCTCTC 894
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 853 GTTTCTTTTGGGCATTCTTTGGATGGTTCTATTCAGGTGGTGAAAAATGCGGATTCTCTC 912
Query 895 AGTTCCCTACATTTGGATTACAAGCTTTGGA-AAAATCATTCTACTTTGACTTCAGTATG 953
|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 913 AGTTCCCTACATTTGGGTTACAAGCTTTGGACAAAA-CATTCTACTTTGACTTCAGTATG 971
Query 954 ACATATGTTGGAGCTGGGATGATTTGTTCGCATTTGGTGAATCTATCGTTGCTCTTCGGT 1013
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 972 ACATATGTTGGAGCTGGGATGATTTGTTCTCATTTGGTGAATCTGTCGTTGCTCTTCGGT 1031
Query 1014 GCCATCCTCTCGTGGGGAATCATGTGGCCTCTCATAGCCCGGCTTAAAGGCGAATGGTTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GCCATCCTCTCGTGGGGAATCATGTGGCCTCTCATAGCCCGGCTTAAAGGCGAATGGTTC 1091
Query 1074 CCTGCAACATTGGAAA-AGACTAGCATGCAGGGCTTAAATGGCTACAAGGTGTTTATATG 1132
||||||||||| |||| | | ||| |||||||||||||| ||||||||||||||||||||
Sbjct 1092 CCTGCAACATT-GAAAGATAATAGTATGCAGGGCTTAAACGGCTACAAGGTGTTTATATG 1150
Query 1133 CATTGCATTGATCTTAGGAGATGGACTTTATAACTTCCTCAAGATACT-TTTCTTCACTG 1191
||||||| |||||||||||||||| |||||||||||| | |||||||| ||| |||||||
Sbjct 1151 CATTGCACTGATCTTAGGAGATGGGCTTTATAACTTCGTTAAGATACTCTTT-TTCACTG 1209
Query 1192 GAAGAAGCTTCCACTCAAGACTCTCCAAAACCAACAGCATCAGCACATTGGTAGAAGTTC 1251
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GAAGAAGCTTCCACTCTAGACTCTCCAAAACCAACAGCATCAGCACATTGGTAGAAGTTC 1269
Query 1252 CAGAAGATGGCACAAAAGAATCCGATAACCTGAAACGAGAGAATGAAGTGTTCGTTCGAG 1311
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CAGAAGATAGCACGAAAGAATCCGATAACCTGAAACGAGAGAATGAAGTGTTCGTTCGAG 1329
Query 1312 AGAGCATTCCGCTATGGATGGCTTGTGTAGGATACGTATTCTTCTCCCTTGTCTCCATCA 1371
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1330 AGAGCATTCCGCTATGGATGGCTTGTGTCGGATACTTATTCTTCTCCCTTGTCTCCATCA 1389
Query 1372 TTGCGATCCCTCTGATGTTCCCTCAGTTGAAATGGTACTTCGTCCTCGTAGCTTACCTCC 1431
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1390 TTGCCATCCCTCTGATGTTCCCTCAGCTGAAATGGTACTTCGTCCTCGTAGCTTACCTCC 1449
Query 1432 TTGCCCCGTCCCTCAGCTTCTGTAACGCGTATGGAGCCGGGTTAACGGATATGAACATGG 1491
| |||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1450 TCGCCCCGTCTCTCAGCTTCTGTAACGCCTATGGAGCTGGCTTAACGGATATGAACATGG 1509
Query 1492 CTTACAACTACGGTAAAGCAGCGCTCTTTGTGATGGCAGCACTGGCAGGAAAAAACGATG 1551
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1510 CTTACAACTATGGTAAAGCGGCGCTCTTTGTGATGGCGGCACTGGCAGGAAAAAACGATG 1569
Query 1552 GAGTGGTGGCTGGGATGGTTGCTTGTGGTCTCATCAAATCAATTGTCTCTGTCTCGGCTG 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1570 GAGTGGTGGCTGGGATGGTTGCTTGTGGTCTCATCAAATCAATTGTCTCTGTCTCAGCTG 1629
Query 1612 ACCTGATGCATGATTTCAAGACAGGACATCTAACGCAAACCTCGCCCCGCTCGATGCTTG 1671
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1630 ACCTGATGCATGATTTCAAGACGGGACATCTTACGCAAACCTCGCCCCGCTCAATGCTTG 1689
Query 1672 TTGCACAAGCCATCGGGACAGCGATAGGCTGCGTGGTCGCACCACTCACCTTCTTCCTCT 1731
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1690 TTGCACAAGCCATAGGGACAGCGATAGGCTGCGTGGTTGCGCCACTCACCTTCTTCCTCT 1749
Query 1732 TCTACAAGGCGTTTGATGTTGGAAACCAAAATGGTGAATACAAGGCTCCTTATGCTATGA 1791
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1750 TCTACAAGGCGTTTGATGTTGGAAACCAAAATGGTGAATACAAAGCTCCTTATGCTATGA 1809
Query 1792 TTTACAGAAACATGGCCATTATCGGTGTTCAAGGTCTCTCGGCTCTTCCCC-AGCATTGC 1850
| |||||||||||||| ||||||||||||||||||| ||| |||| ||||| ||||||||
Sbjct 1810 TATACAGAAACATGGCTATTATCGGTGTTCAAGGTCCCTCCGCTC-TCCCCAAGCATTGC 1868
Query 1851 CTGGAGCTTTGCTACGGATTCTTTGCCTTTGCGGTTGTTGCCAACCTGGCAAGAGACCTG 1910
|| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1869 CTAGAGCTTTGCTACGGATTCTTTGCCTTTGCGGTTGCTGCCAACTTGGCAAGAGACCTC 1928
Query 1911 TTGCCAGATAGGCCGGGGAAGTGGATCCCACTCCCGATGGCAATGGCTGTACCGTTCCTG 1970
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 TTACCAGATAAGCCAGGGAAGTGGATCCCACTCCCGATGGCAATGGCTGTACCGTTCCTG 1988
Query 1971 GTGGGTGGGTCGTTTGCAATCGATATGTGTATCGGGAGTGTT-GTGGTATTCGTTTGGCA 2029
|||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||| |
Sbjct 1989 GTGGGTGGGTCGTTCGCAATCGATATGTGTATCGGGAG-CTTAGTGGTATACGTTTGGAA 2047
Query 2030 GAAGGTGAACCGTAAGAAGGCAGATGTGATGATTCCGGCTGTTGCATCAGGTTTGATATG 2089
|||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2048 AAAGGTGAATCGTAAGAAGGCAGATGTGATGGTTCCAGCTGTTGCATCAGGTTTGATATG 2107
Query 2090 TGGAGATGGTCTCTGGATTCTGCCTTCTTCTTTGCTGGCTCTGGCTAAGGTTAGACCTCC 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TGGAGATGGTCTCTGGATTCTGCCTTCTTCTTTGCTGGCTCTGGCTAAGGTTAGACCTCC 2167
Query 2150 TATCTGTATGAACTTCACTGCGGCTCATTAAGGCGGAGAGAATTTTC-AGACAAAACCCG 2208
|||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||
Sbjct 2168 TATCTGTATGAACTTCACTGCGGCTCATTAAGGCAGAAAGA-TTTTCCAGACAAAACCCG 2226
Query 2209 AACTTATTGCCGGAGGAATGAATGTATACTAGATGTGGTTAGGTTAGGAGTAGACAGTTA 2268
|||||| ||||||| || | |||||| |||||||||||||||||||||||||||||||
Sbjct 2227 AACTTACCGCCGGAG-AA--A-TGTATAGTAGATGTGGTTAGGTTAGGAGTAGACAGTTA 2282
Query 2269 AAGAGGGATTAAACCA 2284
||||||||| ||||||
Sbjct 2283 AAGAGGGATGAAACCA 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116264462220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5