BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489304
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24390.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2379 0.0
AT3G49350.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 713 0.0
> AT5G24390.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr5:8326607-8329490 REVERSE LENGTH=2236
Length=2236
Score = 2379 bits (1288), Expect = 0.0
Identities = 1500/1601 (94%), Gaps = 19/1601 (1%)
Strand=Plus/Plus
Query 212 TGGGTTTCGATGAAAGCTCTTA-GAAGAATTCAAACGAGGTCTTCGTTTCCTAATCCTTC 270
||||||||||||||||||| || ||||||| ||||||| |||| ||||||| ||||||||
Sbjct 244 TGGGTTTCGATGAAAGCTC-TACGAAGAATACAAACGAAGTCTACGTTTCCAAATCCTTC 302
Query 271 TTCTCCGTCATCTCCGTGGACTCATTTGCGTTCTGCTTTCGTAATTGTTActtcttcttc 330
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 303 TTCTCCGTCATCTCCGTGGACTCATTTGCGTTCTGCTTTCGTCCTTGTTACTTCTTCTTC 362
Query 331 tcctgcttcttg---ttcttcttctGATCCGCATAGGCTAAAATCGCCCTGGTCCCGAAG 387
||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 363 TCCAGCTTCTTGTTCTTCTTCTTCTGATCCGCATCGGCTTAAATCGCCCTGGTCCCGGAG 422
Query 388 AAAA-CGAAAGAAACCCCTCACACTTCGCCGGTGGAGAAGGTTTTTCACTCCC-GAGGGT 445
|||| |||| ||||| ||||||||||||||||||||||| | |||||| ||| ||||||
Sbjct 423 AAAAGGGAAA-AAACCACTCACACTTCGCCGGTGGAGAAGATGTTTCAC-CCCTGAGGGT 480
Query 446 AGACTTCGGAACGGAGGAGTAGATTTATTGAAGAAAGTCCGGAGTAGAGGCATTGATCCT 505
||| ||||||| || ||||| ||||| ||||||||||| |||| ||||||||||||||||
Sbjct 481 AGAATTCGGAATGGGGGAGTTGATTTGTTGAAGAAAGTTCGGACTAGAGGCATTGATCCT 540
Query 506 AGCATTCGTTCGGAGGTTTGGCCATTTCTTCTTGGAGTGTGTGATTTGAATAGTTCCGAA 565
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 AGCATTCGGTCTGAGGTGTGGCCATTTCTTCTTGGAGTGTGTGATTTCAATAGTTCCGAA 600
Query 566 GAAGAGAGAGGTGCTACAAGAACTTGGAGAAGAAAAGTGTATGAGAGACTACGCAGGCAG 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGAGAGAGGTGCTACAAGAACTTGGAGAAGAAAAGTGTATGAGAGACTACGCAGGCAG 660
Query 626 TGCAAAAGGCTTCAAAGACAAAACAGTGCAACTCTTAAGTTAAACAAGATCAATAAAACT 685
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 661 TGCAAAAGGCTTCAAAAACAAAACAGTGGGACTTTTAAGTTAAACAAGATCAATAAAACT 720
Query 686 ACTCAAGATGA-G--CATGATAGTTGGTCTCTTGCACAAGACTCTGACAGTTCATGTTCT 742
||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 721 ACTCAAGATGATGAGCATGATAGTTGGTCTCTTGCGCAAGACTCTGAAAGTTCATGTTCT 780
Query 743 GGTGATGCTTGCAGCGCCCACGAGTCTCTTA-CTAGCGACAAAGACAACACGGAAGATAT 801
| |||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 781 GATGATGCTTGCAGCGTCCACGAGTCTCTTATC-AGCGATAAAGACAACACGGAAGATAT 839
Query 802 TGGCTACATGAGTGATGTCTCATGTACGCTTGACAGAGACTACTC-TGGTTCCAGACACC 860
|||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 840 TGGCTACATGAGTGATGTCTCATGTACGCTTGACAGAGACTA-TAATGGTTCAAGACACC 898
Query 861 TGAATTCTGAGTCCTCAGATTCAGATTCATCTGATGAGAATGATTCTGTTCAGGTCGCTC 920
|||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 TGAACTCTGAGTCGTCAGACTCAGATTCATCTGATGAGAATGATTATGTTCAGGTCGCTC 958
Query 921 CTTCTTCTGAAGGGAGGGATGAAAATAGTACTTCTCCATCCAGCATATATATTTCTCGTA 980
|||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 CTTCTTGTGAAGGGAAAGATGAAAACAGTACTTCTCCATCCAGCATATATATTTCTCGTA 1018
Query 981 CCAAAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTTGACGCTCTTCGTGCCGATA 1040
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1019 CCAAAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTAGACGCTCTCCGTGCAGATA 1078
Query 1041 CAGAGTGGACTCCATATTCCTCA-TCCCAAGCTATGGTGTCAGAGAATAGGGCACGCCGT 1099
|||| |||||||||||||| ||| ||||||||| |||| ||||||||||||||||| |||
Sbjct 1079 CAGAATGGACTCCATATTC-TCAATCCCAAGCTTTGGTTTCAGAGAATAGGGCACGTCGT 1137
Query 1100 GCTGCTGAGGCAGTTGTTTTAAAGGATTACAGTCATTTGGAACCTTCGAAAGTCTTTCAC 1159
|||||||| ||||||| | |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1138 GCTGCTGAAGCAGTTGGTCTAAAGGATTACAGTTATTTGGAACCTTCGAAAATCTTTCAC 1197
Query 1160 GCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTATATGATCCTGAAATTGGCTAT 1219
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1198 GCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTACATGACCCTGAAATTGGCTAC 1257
Query 1220 TGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCTGTCATACCTGATGACTACGAG 1279
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1258 TGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCAGTCATACCTGATGACTACGAG 1317
Query 1280 GCATTTTGGTGTTTTGTTGGGTTCATGAAGAAAGCACGTCAGAATTTCAGACTCGATGAG 1339
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1318 GCATTTTGGTGTTTCGTTGGGTTCATGAAGAAAGCTCGTCAGAATTTCAGAGTCGATGAG 1377
Query 1340 GTTGGGATCACAAGGCAACTCAACATAGTATCAAAGATTATCAAATCCAAAGACTCACAG 1399
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1378 GTTGGGATCACAAGGCAACTGAACATAGTCTCAAAGATTATCAAATCCAAAGACTCACAA 1437
Query 1400 CTCTACAAGCATCTTGAGAAAGTCAAGGCGGAAGACTGTTTCTTTGTTTACAGAATGGTG 1459
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1438 CTCTACAAGCATCTTGAGAAAGTCAAGGCTGAAGACTGTTTCTTTGTTTACAGAATGGTT 1497
Query 1460 CTTGTGATGTTTAGAAGAGAGCTGACTCTGGAGCAAACACTGTATCTCTGGGAAGTGATT 1519
||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1498 CTTGTTATGTTTAGAAGAGAGCTGACTCTGGAGCAAACATTGCATCTCTGGGAAGTGATT 1557
Query 1520 TGGGCAGACCAAGCTGCAGTAAGAGCTGGCATGGGGAAATCTTCCTGGAGCCGTCGAATA 1579
|||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||
Sbjct 1558 TGGGCAGACCAAGCTGCAATAAGAGCTGGGATGGGGAAATCTTCCTGGAGCAGACGAATA 1617
Query 1580 AAGCAGCGGGCTCCTCCCACAGAGGATTTGTTGCTGTACGCGGTAGCTGCTTCTGTGTTG 1639
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1618 AAGCAGCGGGCTCCTCCCACGGAGGATTTGTTGCTGTACGTGGTAGCTGCTTCTGTGTTG 1677
Query 1640 CAAAGGAGGAAAGTCATAATAGAGAAGTACAATAGCATGGAGGAGATTCTCCGGGAGTGC 1699
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1678 CAAAGGAGGAAAGTCATAATAGAGAAGTACAGTAGCATGGAGGAGATTCTCCGAGAGTGC 1737
Query 1700 CACAATATGGTAGGGAAACTAGACGTGTGGAAGCTCTTAGACGATGCACACGACCTTATT 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 CACAATATGGTAGGGAAACTAGACGTGTGGAAGCTCTTAGACGATGCACACGACCTTATT 1797
Query 1760 GTCACCCTCCACGCCAAGATCGAACATTCGAATCCCATAAT 1800
|| |||||||||||||||||||||||||| | ||||| |||
Sbjct 1798 GTTACCCTCCACGCCAAGATCGAACATTCTA-TCCCACAAT 1837
Score = 313 bits (169), Expect = 5e-84
Identities = 218/241 (90%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 1866 CAAACCCAGGATTTGATATACTGCTATCTAAATCCCGATGTAACATAT-AACAAGGCCAG 1924
|||||| |||||||||| ||| ||||||||||||||| | |||||||| || | |||| |
Sbjct 1959 CAAACCGAGGATTTGATTTACCGCTATCTAAATCCCGGTTTAACATATCAA-ATGGCCTG 2017
Query 1925 TATCAAGATAGGCATGATTTGTGTGGTGTGTTGTGAAACTTTCAGAGGTGAGTTTCTTTG 1984
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2018 AATCAAGATAGGCATGATTTGTGTGGTGTGTTGGGAAACTTTCAGAGGTGAGTTTCTCTG 2077
Query 1985 CCTCCATTTTCAATTTTGTATATG-AAACAAtttt-tttGTGCCGGGAAAGAGAATCTTC 2042
| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 2078 CTTTCATTTTCAATTTTGTATATGGAAACAATTTTGTTTGTGCCGGGAAAGAGAATCTTT 2137
Query 2043 CGTCGGTAAAAGAATAAACCAACTCT-TT-CTGTTCATTCTTATTCCAAAATTATTAATA 2100
|| ||||||||||| ||||||||||| || ||||||||||||||||||||| ||| ||||
Sbjct 2138 CGCCGGTAAAAGAAGAAACCAACTCTCTTTCTGTTCATTCTTATTCCAAAAGTATAAATA 2197
Query 2101 T 2101
|
Sbjct 2198 T 2198
> AT3G49350.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr3:18297406-18300189 REVERSE LENGTH=2220
Length=2220
Score = 713 bits (386), Expect = 0.0
Identities = 777/962 (81%), Gaps = 41/962 (4%)
Strand=Plus/Plus
Query 856 ACACCTGAATTCTGAGTCCTCAGATTCAGATTCATCTGATGAGAATG-ATTCTGTTCAGG 914
||| || ||||| ||||| |||||||||||||| || ||||||| || | | || ||||
Sbjct 1025 ACA-CTTAATTCCGAGTCATCAGATTCAGATTCTTCAGATGAGAGTGAAGT-GGTACAGG 1082
Query 915 TCGCTCCTTCTTCTG-AAGGGAGGGATGAAAATAGTACTTCTCCATCCAGCAT-ATATAT 972
|| || ||||||| | ||||| |||||||||| |||| |||| | || |||
Sbjct 1083 TCTTTCAATCTTCTGCTA-CTCCGGATGTGAATAGTACTTATCCAGCCAG-TTCATCTAT 1140
Query 973 TTCTCGTACCA-AAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTTGACGCTC-TT 1030
| | || | || |||||||||||||||| |||||||||||||||||||| ||||| | |
Sbjct 1141 TCCCCGGA-CAGAAGAGGATTTTGTGACGTGGCAGCGTATTATCCGTCTAGACGC-CGTG 1198
Query 1031 CGTGCCGA-TACAGAGTGGA-CTCCATATTCCT-CATCCCAAGCTA-TGGTGTCAGAGAA 1086
||||| || | ||||||||| |||| |||| || ||||||| || | | | || ||| |
Sbjct 1199 CGTGCTGACT-CAGAGTGGACCTCC-TATT-CTCCATCCCAGGC-AGTTATATCGGAGGA 1254
Query 1087 TAGGGCACGCCGTGCTGCTGAGGCAGTT-GTTTTAAAGGATTACAGTCATTTGGAACC-T 1144
||| ||| | ||||| |||||||| ||| | || ||| ||||||| ||| ||||||| |
Sbjct 1255 TAGAGCATGTCGTGCCGCTGAGGCGGTTGGGTTGAAA-GATTACAATCACCTGGAACCGT 1313
Query 1145 TCGAAAGTCTTTCACGCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTATATGAT 1204
| ||| ||||||| ||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 1314 AC-AAAATCTTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCTTATGCTTTGTATGAC 1372
Query 1205 CCTGAAATTGGCTATTGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCTGTCATA 1264
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1373 CCTGACATTGGATATTGCCAAGGAATGAGTGATCTTCTCTCTCCTATACTCTCTGTAATC 1432
Query 1265 CCTGATGACTACGAGG-CATTTTGGTGTTTTGTTGGGTTCATGAAGAAAGCACGTCAGAA 1323
||||||||| | || | | ||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 1433 CCTGATGACCATGAAGTC-TTTTGGTGTTTCGTCGGGTTCATGAAGAAAGCTCGTCACAA 1491
Query 1324 TTTCAGACTCGATGAGGTTGGGATCACAAGGCAACTCAACATAGTATCAAAGATTATCAA 1383
||||||||| || |||||||| |||| ||| |||||||||||||| |||||||| |||||
Sbjct 1492 TTTCAGACTTGACGAGGTTGGAATCAGAAGACAACTCAACATAGTCTCAAAGATAATCAA 1551
Query 1384 ATCCAAAGACTCACAGCTCTACAAGCATCTTGAGAAAGTC-AAGGCGGAAGACTGTTTCT 1442
||| |||||||| ||||| || | ||| ||||||||| || ||| | |||||||||||||
Sbjct 1552 ATCTAAAGACTCTCAGCTTTATAGGCACCTTGAGAAACTCCAAG-CTGAAGACTGTTTCT 1610
Query 1443 TTGTTTACAGAATGGT-GCTTGTGATGTTTAGAAGAGAGCTGACTCTGGAGCAAACACTG 1501
|||| ||||||||||| | |||||||||| ||| |||||||||| || || || ||| ||
Sbjct 1611 TTGTATACAGAATGGTTG-TTGTGATGTTCAGACGAGAGCTGACACTTGATCAGACATTG 1669
Query 1502 TATCTCTGGGAAGTGATTTGGGCAGACCAAGCTGCAGTAAGAGCTGGCATGGGGAAATCT 1561
| ||| |||||||| || |||||||| ||||| ||| | ||||| || ||||| |||||
Sbjct 1670 TGTCTATGGGAAGTAATGTGGGCAGATCAAGCCGCAATCAGAGCCGGGATGGGAAAATCC 1729
Query 1562 TCCTGGAGCCGTCGAATAAAGCAGCGGGCTCCTCCCACAGAGGATTTGTTGCTGTACGCG 1621
| ||||| | || ||| ||| || || |||||||| || |||||| |||| || ||
Sbjct 1730 GCGTGGAGTAG--GA-TAAGGCAACGTGCACCTCCCACTGATGATTTGGTGCTCTATGCA 1786
Query 1622 GTAGCTGCTTCTGTGTTGCAAAGGAGGAAA-GTCATAATAGAGAAG-TACAATAGCATGG 1679
|||| || || ||||||||||| |||||| || || ||||| ||| || || |||||||
Sbjct 1787 ATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGT-ATTATAGA-AAGGTATAACAGCATGG 1844
Query 1680 AGGAGATTCTCCGGGAGTGCCACAA-TATGGTAGGGAAACTAGACGTGTGGAAGCTC-TT 1737
| |||||| | |||||||||| || ||||| |||| | |||| |||||||||||| ||
Sbjct 1845 ATGAGATTTTAAGGGAGTGCCA-AAGTATGGCAGGGCAGTTAGATGTGTGGAAGCTCCTT 1903
Query 1738 AGACGATGCACACGACCTTATTGTCACCCTCCACGCCAAGATCGAACATTCGAATCCCAT 1797
|| |||||||| ||||| |||| || || ||| ||||||| |||||||| | || |||
Sbjct 1904 -GATGATGCACATGACCTCGTTGTTACTCTACACACCAAGATTGAACATTC-ATTCTCAT 1961
Query 1798 AA 1799
||
Sbjct 1962 AA 1963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104166130875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5