BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489305
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24400.1 | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferas... 1598 0.0
> AT5G24400.1 | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like
superfamily protein | chr5:8330315-8331837 REVERSE
LENGTH=1248
Length=1248
Score = 1598 bits (865), Expect = 0.0
Identities = 1136/1261 (90%), Gaps = 42/1261 (3%)
Strand=Plus/Plus
Query 1 AAAGTCAAAGTTGTTCACTTTCCCCTATAAAAACGctctctttaac-tt-ttttcaatgg 58
||||||||||||||||||||| ||||||||||||||||| | || || ||||||||||
Sbjct 1 AAAGTCAAAGTTGTTCACTTT-ACCTATAAAAACGCTCTC--TCACTTTCTTTTCAATGG 57
Query 59 cttcttcttcttcttcttgtttccttcgctcgattctcttctcttctcCCACTAACCTCC 118
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 58 ------CTTCTTCTTCTTGTTTCCTTCGCTCGATTCTCTTCTCTTCTCCTACTAACCTTC 111
Query 119 GTTCAAACT-ACCCTCTCTCCACTTTCTTCCCCAAGAATCATCTCACTTGCTCTCCTTCC 177
||||||| | ||| |||| |||||||||||||||||||| |||||| |||||||| ||||
Sbjct 112 GTTCAAA-TCACCATCTCCCCACTTTCTTCCCCAAGAATTATCTCATTTGCTCTCATTCC 170
Query 178 ACTTCTCCTCGTTTCGAATCGTTCTCGGTTTCATCGATCGAAACTGGATCTAGCAAGAGA 237
|||||| |||| ||||||||| |||||||||||||||||| ||||||||||| ||||| |
Sbjct 171 ACTTCTTCTCGCTTCGAATCGCTCTCGGTTTCATCGATCGGAACTGGATCTACCAAGA-A 229
Query 238 GT-ATCCGATACTCGGATAAAAGTGAAGAGCATGGCTACGACGGATATAGGAAAGGAGGA 296
| |||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||
Sbjct 230 ATCATCCGATACTCGGAGAAAGGTAAAGAGCATGGCTACGACAAATATAGGAAAGGAGGA 289
Query 297 GAAGAAAAGAGTTGAGATTTACGATCTTGAGGAGAATTTAGCGATTGATTTGGCTAAATT 356
|||||||||||| |||||||| ||||| || |||||||||| ||||||||||||||||||
Sbjct 290 GAAGAAAAGAGTCGAGATTTATGATCTCGAAGAGAATTTAGTGATTGATTTGGCTAAATT 349
Query 357 CACTGCTA-ATCTCTCCGGTAAGTTTTGTAAAGAGAGAGGTGCTTTCACTGTCGTTGTCT 415
||| || | ||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 350 CACAGC-AGATCTCTCCGATAAGTTTTGTAAAGAGAGAGGCGCTTTCACCGTCGTTGTCT 408
Query 416 CCGGTGGCTCTCTCATCAAATCTCTCCGGAAACTAGTAGAATCTCCTTATGTTGACTCTA 475
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||
Sbjct 409 CCGGTGGCTCTCTCATCAAATCACTCCGGAAATTAGTAGAATCTCCTTACGTTGATTCTA 468
Query 476 TAGATTGGGCAAGATGGCAttttttttGGGTCGACGAGCGGGTTGTTCCCAAGAATCACG 535
||||||||||||| ||||||||||| ||||| |||||| | |||||||||||||||||||
Sbjct 469 TAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGACGAGAGAGTTGTTCCCAAGAATCACG 528
Query 536 ACGATAGCAACTACAAACTCGCTTATGATAGTTTTCTGTCCAAGGTTCCAATTCCGCCTG 595
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 529 ATGATAGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGGTACCAATTCCGCCTG 588
Query 596 GAAATGTATATGCAATCAACGAATCCCTCTCTGCTGAGGCTGCAGCGGATGATTACGAGA 655
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 589 GAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCAGCGGATGATTACGAGA 648
Query 656 CCTGCCTCAAACATTTGGTCAAGACCAACATCCTCCGCT-TATCTGAATCAACCGGCTTC 714
|||||||||||||||||||||| |||||||| ||||| | ||||||||||||| |||||
Sbjct 649 CCTGCCTCAAACATTTGGTCAACACCAACATTCTCCG-TGTATCTGAATCAACTGGCTTT 707
Query 715 CCCAAATTTGATCTCATGCTTCTCGGTATGGGGCCTGATGGCCATGTGGCATCCTTATTC 774
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct 708 CCCAAATTTGATCTCATGCTTCTAGGTATGGGACCTGATGGTCATGTGGCATCATTATTC 767
Query 775 CCAGGACATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCCGACTCTCCA 834
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 CCTGGGCATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCTGACTCTCCA 827
Query 835 AAACCGCCGTCTGAAAGAATCACCTTCACATTCCCGGTCATCAACTCATCTGCACATGTA 894
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 828 AAACCACCGTCTGAGAGAATCACCTTCACGTTCCCGGTCATCAACTCATCTGCACATGTA 887
Query 895 GCTCTAGTCGTTTGCGGTTCTGGGAAAGCCGAAGCTGTGCAGGCAGCTTTAAAGAAGACT 954
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 888 GCTCTAGTTGTTTGCGGTTCTGGGAAAGCTGAAGCTGTGGAGGCAGCTTTAAAGAAGACT 947
Query 955 GGGGATGTACCACCTGCGGGTTCCGTTTCTGCTGAAGACGAGCTGGTTTGGTTCCTGGAT 1014
||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 948 GGGAATGTACCACCTGCTGGTTCTGTTTCTGCTGAAGACGAGTTGGTTTGGTTCCTGGAC 1007
Query 1015 AAACCAGCCTCTTCCAAGCTCTAAA--C----------C-----ATTCCAGTGAACTTAC 1057
|||||||| |||||||||||||||| | | ||||||||||||||||
Sbjct 1008 AAACCAGCATCTTCCAAGCTCTAAAAACAGGTGGTATGCTTCCCATTCCAGTGAACTTAC 1067
Query 1058 CAATGTGACTAGTCCAGTTTGGTTTTTGGATTTTTACTCGCCGGTTCTTTCCATTTATGT 1117
||||||||||||||| |||| ||||||||||||| |||| |||||| |||||||||||
Sbjct 1068 CAATGTGACTAGTCCGGTTTAGTTTTTGGATTTTGACTCTTTGGTTCTCTCCATTTATGT 1127
Query 1118 TTTGGGAAGAGACTGTTGTAATAAAAGCGT--ACTTGACATGGAAATAATGAATCAAATT 1175
| ||||||||||||||||| |||||||||| |||| |||||||||||||||| | |||
Sbjct 1128 TGTGGGAAGAGACTGTTGTGATAAAAGCGTGTACTTTACATGGAAATAATGAA-CTAATC 1186
Query 1176 A-TGGTTTCTCTAATTTGTTTT--TGTATTTTGGTTCAAGTCTATCGGAACCAACATTCT 1232
| |||||||||| ||||||||| |||||||||||| || |||||||||||||||| |||
Sbjct 1187 AATGGTTTCTCTGATTTGTTTTGGTGTATTTTGGTTAAAATCTATCGGAACCAACACTCT 1246
Query 1233 C 1233
|
Sbjct 1247 C 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5