BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489310
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24460.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1321 0.0
> AT5G24460.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: cell wall; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages; Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8354699-8355874
FORWARD LENGTH=1176
Length=1176
Score = 1321 bits (715), Expect = 0.0
Identities = 869/940 (92%), Gaps = 24/940 (3%)
Strand=Plus/Plus
Query 52 CGATTCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 111
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 CGA-TCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 145
Query 112 ACCACTCGTTAACCGCCGT-A-A-CAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 168
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 146 ACCACTCGTTAACCGCCGTAACATCAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 205
Query 169 CGCTCTACCTGATCTATTT-CTCGCGGCGGTttctcttctcttcctctggtcatctccta 227
|||| |||||||| | ||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 206 CGCTTTACCTGATAT-TTTCCTCGCGGCGGTCTCTCTCCTTTTCCTCTGGTCATCTCCTA 264
Query 228 aacctctactctctcttcctccaaacagattctcttTCCCTCTAAATCCTCGCCGTCGA- 286
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 265 AACCTCTAGTCTCTCTTCCTCCGAACAGATTCTCTTTCCCTCTAAATCCTCGCCGTCGAT 324
Query 287 --ATCCCCGCCATGTCTCGCCGA--T-CTCCTCCTCCTCCT--T-CTCAACGCTTCGCGA 338
||| ||||||||||||||||| | |||||||||||||| | ||||||||||||| |
Sbjct 325 CCATCACCGCCATGTCTCGCCGATCTCCTCCTCCTCCTCCTCCTACTCAACGCTTCGCTA 384
Query 339 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGGTTACCTTCCGATTCATTCGCCGCTT 398
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 385 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGATTACCTTCCGATTCATTCGCCGCTT 444
Query 399 GGGGAGTCAAACCGGGAACTAAAAACGTTCATAACCTCTGGCTTGAACTCTCCGACGGCG 458
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 445 GGGGAGTCAAACCGGGAACCAAAAACGTTCATAACCTCTGGCTAGAACTCTCCGACGGCG 504
Query 459 AAACTTCTCTCGCCGATTCAACTCCTCCGGTTCGCACCGTCAACGTCGTCACCGTTCGAG 518
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 505 AAACTTCTCTCGCCGATTCAACTCCTCCAGTACGCACCGTCAACGTCGTCACCGTTCGAG 564
Query 519 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 624
Query 579 TTAGAGAGAGATTTCGTCCGTTATCGGAGAAGATGAAGCCTGAAGAATCTCCCGATGAAG 638
|| | || ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 625 TTCGTGAAAGATTTCGTCCTTTATCAGAGAAAATGAAGCCTGAAGAATCTCCCGACGAAG 684
Query 639 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTTAATGGTGATG---A---CG 692
|||||||||||||||||||||||||||||||||||||||| ||||| |||| | |
Sbjct 685 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTCAATGGCGATGGTGATAACA 744
Query 693 TTGGACAGAGAATTAGGATTCTTCCTGGAAGTTATAGCAGAAGAGTGGAGGAAAGGAACT 752
||||||||||||||| ||||||||| |||| ||||| ||||||||| || ||||||||||
Sbjct 745 TTGGACAGAGAATTAAGATTCTTCCCGGAACTTATAACAGAAGAGTTGAAGAAAGGAACT 804
Query 753 CGCTGTCTTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCGGTGGATGCGACGGTGG 812
|||| || ||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 805 CGCTATCGTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCTGTGAATGCAACGGTGG 864
Query 813 AGGGACTACCGGAGGAAGATTTCTGTACGGAAGAGAAAGAGTACGACGGTGGAGACTCGA 872
||||| |||||||| |||||||||||||||| || ||||||||||| || ||||||||||
Sbjct 865 AGGGATTACCGGAGCAAGATTTCTGTACGGAGGAAAAAGAGTACGAGGGAGGAGACTCGA 924
Query 873 CGATGGAAGATTCGGTGGAAACACGCGCCGCTGGAAAAGCTGTAACTGTGAAACGGCATT 932
||| |||||||||| ||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 925 CGA---AAGATTCGGTTGAAACACTCGCCGCTGGGAATGCTGTAACTGTGAAACGACATT 981
Query 933 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCCTAAAA 972
|||||||||||||||||||||||||||||||||| |||||
Sbjct 982 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCTTAAAA 1021
Score = 163 bits (88), Expect = 3e-39
Identities = 118/131 (90%), Gaps = 7/131 (5%)
Strand=Plus/Plus
Query 970 AAATTTTATCAATCTTG---AAGATACATGAATAATC--AGAGCCATGTAGAGATACATA 1024
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1047 AAATTTTATCAATCTTGCTTTTGATACATGAATAATCAGAGAGCCATGTAGAGATACATA 1106
Query 1025 TACACATTTTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATGTTTGAGCTAATGG 1084
|||||| |||||||||||||||||||||||||||||||||||||| |||| | || |||
Sbjct 1107 TACACA--TTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATTTTTGTGTTAGTGG 1164
Query 1085 ATACTATTCTC 1095
|||||||||||
Sbjct 1165 ATACTATTCTC 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5