BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489312
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24490.1 | Symbols: | 30S ribosomal protein, putative | chr... 1877 0.0
> AT5G24490.1 | Symbols: | 30S ribosomal protein, putative | chr5:8365601-8367460
FORWARD LENGTH=1298
Length=1298
Score = 1877 bits (1016), Expect = 0.0
Identities = 1159/1228 (94%), Gaps = 9/1228 (1%)
Strand=Plus/Plus
Query 35 CTCTCTCACTCT--CAAATGTCGACGCTTTTAGGTTTCTCTCAAACGAAGTTTCACCATT 92
|||||||||||| |||||| | |||||||||||||||||||| || |||||||||||||
Sbjct 73 CTCTCTCACTCTCACAAATGGCAACGCTTTTAGGTTTCTCTCAGACTAAGTTTCACCATT 132
Query 93 GCGGCGTCTCGATTTCTACGCCGCCGTGCTCATCTTCTTCCACGGTGGTCTCAATGGTTG 152
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 133 GCGGCGTCTGGATTTCTACGCCGCCGTGCTCATCTTCTTCCACGGTAGTCTCAATGGTGG 192
Query 153 GCTCGACCCGGACTGATTCGAAAAAGCTCCGGTCAGATTTCCTCGGCCATATTGGTTACG 212
||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 193 GCTTGAATCGGACTGATTCGAAAAAGCTCCGTTCAGATTTCCTCGGCCAGATTGGTTACG 252
Query 213 ATGATCGGAGACAAGTAAGACCCAGTTCCTGTAAAAGCTCATTAGCTGTGAAAATGTCGT 272
| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 253 AAGATCGGAGACAAGTAAGACACAGTTACTGTAGAAGCTCATTAGCTGTGAAAATGTCGT 312
Query 273 GGGACGGTCCTCTCGCTTCCGTCAAGTTGATCATCCAAGGAAAAAACCTCGAGTTATCAG 332
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GGGACGGTCCTCTTGCTTCCGTCAAGTTGATCATCCAAGGAAAAAACCTCGAGTTATCAG 372
Query 333 AGCCAATCAAGCAGCATGTTGAAGATAAAGTAGGGAAATCTGTTCAGAAACACAGTCATC 392
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 373 AGCCAATTAAGCAGCATGTTGAAGAGAAAGTAGGCAAATCTGTTCAGAAACACAGTCATC 432
Query 393 TTGTGAGAGAAGTTGATGTAAGACTCTCTGTTCGAGGCGGAGAGTTTGGTAAAGGCCCTA 452
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 433 TTGTGAGAGAAGTTGATGTAAGACTCTCTGTTCGTGGTGGAGAGTTTGGTAAAGGCCCTA 492
Query 453 GGATTCGTAGATGCGAGGTGACATTGTTTACAAAGAAGCATGGTGTTGTGCGTGCTGAGG 512
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GGATTCGAAGATGTGAGGTGACATTGTTTACAAAGAAGCATGGTGTTGTGCGTGCTGAGG 552
Query 513 AAGATGCTGAGACGGTATATGCTTGTATCGACTTGGTATCAACGATAATACAGAGGAAGC 572
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AAGATGCTGAGACAGTATACGCTTGTATCGACTTGGTATCAACGATAATACAGAGGAAGC 612
Query 573 TGAGGAAGATCAAGGAGAAGGACTCAGACCATGGAAGGCACATGAAAGGTTTCAACAGAT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGAGGAAGATCAAGGAGAAGGACTCAGACCATGGAAGGCACATGAAAGGTTTCAACAGAT 672
Query 633 TGAAGGTAAGAGAACCAGTGATTGAGCCGGTTGTGGAGGATGTTGAGGATAGTACTGACT 692
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 673 TGAAGGTAAGGGAACCAGTGATTGAGCCGGTTGTGGAGGATGTTGAGGACAGTACTGACT 732
Query 693 CGAGCTTAGGAGAAGAAGAAGAAGAGGATGATTTGATCAAGGAGATTGTCCGTACCAAGA 752
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CGAGCGTAGGAGAAGAAGAAGAAGAGGATGATTTGATCAAGGAGATTGTCCGTACCAAGA 792
Query 753 CTTTTGAGATGCCCCCATTGACTGTCTCTGAGGCAGTTGAGCAGCTGGAACTAGTCAGTC 812
|||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 793 CTTTCGAGATGCCACCATTGACTGTCGCTGAGGCAGTCGAGCAGCTGGAACTAGTCAGTC 852
Query 813 ATGACTTCTATGGCTTTCGAAATGAAGAAACTGGTGAGATTAACATAGTGTACAAGAGAA 872
| |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 853 ACGACTTCTATGGCTTCCAAAATGAAGAAACTGGTGAGATAAACATAGTGTACAAGAGAA 912
Query 873 AAGAAGGAGGTTACGGTCTGATAATCCCAAAGAAAGACGGGAAGGCCGAGAAGGTTGAGC 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAGAAGGAGGTTACGGTCTGATAATCCCAAAGAAAGACGGGAAGGCCGAGAAGGTTGAGC 972
Query 933 CGCTTCCAACCGAGCAACTGAATGAACACTCTTTCGCCGAGTAGACTGTCTCTGCTCACA 992
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 973 CGCTTCCAACCGAGCAATTGAATGAACACTCTTTCGCCGAGTAGACTGCCTCTGCTCACA 1032
Query 993 TCTAAACAGATCAGTTCATCTCTCCTTTCAGTTG-CTTGTGTAGGAGTTAGGGTTCTTGA 1051
| |||| ||| || |||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1033 CCAAAACCGATAAGCTCATCTCTCCTTACAGTTTACCTGTGTAGGAGTTAGGGTTCTTGA 1092
Query 1052 GA-AAATAATGAAACAAAGATTGTAGAAGTCAGTGTACATaaaaaaa-GGCCAACCACTC 1109
| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1093 -ATAAACAATGCAACAAAGATTGTAGAAGTCAGTGTACATAAAAAAATGGCCAACCACTC 1151
Query 1110 TTTGTATACTTTTGCG-TGAATCTGAAGATCTTAATTATCTTTAAATCAGATGATAGCAA 1168
||||| |||||||| | |||| ||||||||||||| ||||| |||||||||||||||
Sbjct 1152 TTTGT-TACTTTTGTGGTGAAAAGGAAGATCTTAATTCTCTTTCCATCAGATGATAGCAA 1210
Query 1169 TACATTTTT-CATAAACAAGAATGTGACATAATAATCATACAACAGTTATCATCATATAC 1227
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1211 TACATTTTTTCATAAACAAGAATGTTACATAATAATCATACAACAGTCATCATCATATAC 1270
Query 1228 ATAAATGCGAAACTTAGTTTGGTTTAGT 1255
|||||||| |||||| ||||||||||||
Sbjct 1271 ATAAATGCCAAACTTGGTTTGGTTTAGT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5