BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489313

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24510.1 | Symbols:  | 60S acidic ribosomal protein family |...   220    6e-57


> AT5G24510.1 | Symbols:  | 60S acidic ribosomal protein family 
| chr5:8369171-8369866 REVERSE LENGTH=460
Length=460

 Score =  220 bits (119),  Expect = 6e-57
 Identities = 168/190 (88%), Gaps = 9/190 (5%)
 Strand=Plus/Plus

Query  70   GCCAATGTGAATGTTGAGTCATACTGGCCTAGCCTCTTTGCTAAGCTTTGTGAGAAGAAG  129
            ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  100  GCCAACGTGAATGTCGAGTCATACTGGCCTAGCCTCTTTGCTAAGCTATGTGAGAAGAAG  159

Query  130  AACATCGATGATCTCATCATGAATGTAGGAGCAGGTGGTTGTGGTTGTGGTTCTCTTGGT  189
            |||||||| ||||||||||||||||||||||| |||||||||||| ||||  |||  | |
Sbjct  160  AACATCGACGATCTCATCATGAATGTAGGAGCCGGTGGTTGTGGT-GTGG--CTC--G-T  213

Query  190  CCAGATACCGCTTCTGCTCCTGCCGTTTCTCAATCAGCCTCT-TCTCCCCCAAGAGAAGA  248
            |||| |||| || |||||||| ||| ||||||||||| |||| | ||||  | |||||||
Sbjct  214  CCAGTTACCACTGCTGCTCCTACCGCTTCTCAATCAGTCTCTAT-TCCCG-AGGAGAAGA  271

Query  249  AGAATGAGAT  258
            ||||||||||
Sbjct  272  AGAATGAGAT  281


 Score =  159 bits (86),  Expect = 1e-38
 Identities = 104/113 (92%), Gaps = 0/113 (0%)
 Strand=Plus/Plus

Query  256  GATAATCGGATTGTTTGAGTAGAAGAGATTCTTCTTCTTTGCTTCCAAATTTTATGAATT  315
            |||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct  315  GATAATCGGATTATTTGACTAGAAGAGCTTCTTTTTCTTTGCTTCCAAATTTTATGAATT  374

Query  316  TTGCCTGGTATGAAGATTTTGATTATTTACAATATATTTGATTGTTGATGAGA  368
            ||||||  |||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct  375  TTGCCTCATATGAATATTTTGATTATTTACAATTTATTTGATTGTTTATGAGA  427


 Score =  121 bits (65),  Expect = 6e-27
 Identities = 69/71 (97%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  1   ATGTCGACCAGTGAGCTCGCCTGCACTTATGCGGCTCTCATCCTCCACGGTGATGGAATC  60
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct  1   ATGTCGACCAGTGAGCTCGCCTGCACTTATGCTGCTCTCATCCTCCACGATGATGGAATC  60

Query  61  GAGATCACCGC  71
           |||||||||||
Sbjct  61  GAGATCACCGC  71



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17292105656


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5