BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489315
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24520.1 | Symbols: TTG1, TTG, URM23, ATTTG1 | Transducin/WD... 1818 0.0
> AT5G24520.1 | Symbols: TTG1, TTG, URM23, ATTTG1 | Transducin/WD40
repeat-like superfamily protein | chr5:8370587-8372847
REVERSE LENGTH=1561
Length=1561
Score = 1818 bits (984), Expect = 0.0
Identities = 1118/1181 (95%), Gaps = 15/1181 (1%)
Strand=Plus/Plus
Query 22 GACTGACACTGACCTCAAAACTCTCCTCTCTCTTTCGTCGTGAAGAAGCCAAATCTCGAA 81
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 32 GACTGACACTGACCTCAAAACTCTCCTCTCACTTTCGTCGTGAAGAAGCCAAATCTCGAA 91
Query 82 TCGAATCAGAATCACTCATTTCCATGGATAATTCAGCTCCAGATTCGTTATCCAGATCGG 141
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 TCGAATCAGCACCACACATTTCCATGGATAATTCAGCTCCAGATTCGTTATCCAGATCGG 151
Query 142 AAACCGCCGTCACATACGACTCACCTTATCCACTCTACGCCATGGCTTTCTCTTCTCTCC 201
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 152 AAACCGCCGTCACATACGACTCACCATATCCACTCTACGCCATGGCTTTCTCTTCTCTCC 211
Query 202 GTTCATCCTCCGGTCACAGAATCGCCGTCGGAAGCTTCCTCGAAGATTACAACAACCGCA 261
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 GCTCATCCTCCGGTCACAGAATCGCCGTCGGAAGCTTCCTCGAAGATTACAACAACCGCA 271
Query 262 TCGATATTCTCTCTTTCGATTCCGATTCCATGACCGTTAAGCCTCATCCA-AATCTCTCT 320
|||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 272 TCGACATTCTCTCTTTCGATTCCGATTCAATGACCGTTAAGCCTC-TCCCGAATCTCTCC 330
Query 321 TTCGAACATCCTTATCCTCCAACAAAGCTAATGTTTAGTCCTCCTTCTCTCCGTCGTCCT 380
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 331 TTCGAGCATCCTTATCCTCCAACAAAGCTAATGTTCAGTCCTCCTTCTCTCCGTCGTCCT 390
Query 381 TC-TGCCGGAGATCTACTCGCTTCCTCCGGCGATTTCCTCCGTCTTTGGGAAATTAACGA 439
|| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TCCT-CCGGAGATCTCCTCGCTTCCTCCGGCGATTTCCTCCGTCTTTGGGAAATTAACGA 449
Query 440 AGATTCTTCAACCGTTGAGCCGATCTCGGTTCTCAACAACAGCAAGACGAGTGAGTTTTG 499
|||||| |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 450 AGATTCATCAACCGTCGAGCCAATCTCGGTTCTCAACAACAGCAAAACGAGCGAGTTTTG 509
Query 500 TGCTCCGTTGACCTCTTTTGATTGGAACGATGTGGAGCCGAAACGGCTCGGAACTTGTAG 559
||| |||||||| || || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 510 TGCGCCGTTGACTTCCTTCGATTGGAACGATGTAGAGCCGAAACGTCTCGGAACTTGTAG 569
Query 560 TATTGATACGACTTGTACGATTTGGGATATTGAGAAGTCTGTTGTTGAGACTCAGCTCAT 619
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 570 TATTGATACGACGTGTACGATTTGGGATATTGAGAAGTCTGTTGTTGAGACTCAGCTTAT 629
Query 620 AGCTCATGATAAAGAGGTTCATGACATTGCTTGGGGAGAAGCTAGGGTTTTCGCATCGGT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 630 AGCTCATGATAAAGAGGTTCATGACATTGCTTGGGGAGAAGCTAGGGTTTTCGCATCAGT 689
Query 680 CTCGGCTGATGGATCCGTTAGGATCTTTGATTTACGCGATAAGGAACATTCTACAATCAT 739
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 690 CTCTGCTGATGGATCCGTTAGGATCTTTGATTTACGTGATAAGGAACATTCTACAATCAT 749
Query 740 CTACGAGAGTCCTCAGCCTGATACGCCTCTT-TTAAGACTTGCTTGGAACAAGCAAGACC 798
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 750 TTACGAGAGTCCTCAGCCTGATACGCCT-TTGTTAAGACTTGCTTGGAACAAACAAGATC 808
Query 799 TTAGGTATATGGCGACGATTTTGATGGATTCTAATAAGGTTGTGATTCTCGATATTCGTT 858
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TTAGATATATGGCTACGATTTTGATGGATTCTAATAAGGTTGTGATTCTCGATATTCGTT 868
Query 859 CGCCGACTATGCCTGTTGCGGAGCTTGAAAGGCACCAGGCTAGTGTTAATGCTATAGCTT 918
||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 869 CGCCGACTATGCCTGTTGCTGAGCTTGAAAGACATCAGGCTAGTGTGAATGCTATAGCTT 928
Query 919 GGGCGCCTCAGAGCTGTAAACATATTTGCTCTGGTGGTGATGATACACAGGCTCTTATTT 978
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 929 GGGCGCCTCAGAGCTGTAAACATATTTGTTCTGGTGGTGATGATACACAGGCTCTTATTT 988
Query 979 GGGAGCTTCCTACTGTAGCTGGACCTAATGGGATTGATCCGATGTCGGTTTATTCGGCTG 1038
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 989 GGGAGCTTCCTACTGTTGCTGGACCCAATGGGATTGATCCGATGTCGGTTTATTCGGCTG 1048
Query 1039 GCTCGGAGATAAATCAGTTGCAGTGGTCTTCTTCGCAGCCTGACTGGATTGGAATTGCTT 1098
| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1049 GTTCGGAGATTAATCAGTTGCAGTGGTCTTCTTCGCAGCCTGATTGGATTGGTATTGCTT 1108
Query 1099 TCGCTAACAAAATGCAGCTCCTTAGAGTTTGAG---C---TGTGAAGTGATCAAC--GGA 1150
| ||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 1109 TTGCTAACAAAATGCAGCTCCTTAGAGTTTGAGGTGCAGATGTGAAGTGATCAATAAGGA 1168
Query 1151 CTTTAGCATAGACCCGTATAATCGTCATGTGCGTAAGATAG 1191
|||||||||||||||||||||||||||||||||||| |||
Sbjct 1169 TTTTAGCATAGACCCGTATAATCGTCATGTGCGTAAG-TAG 1208
Score = 204 bits (110), Expect = 2e-51
Identities = 157/178 (88%), Gaps = 9/178 (5%)
Strand=Plus/Plus
Query 1202 TCTGATTGTAACTAAAACTGAATTCATTTGATGAACCAAATGCTACTATGATCTCATCTT 1261
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| || ||
Sbjct 1260 TCTGATTGTAACTAAAACTGAATTCATTTGATGAACCAAATGATACTATTATCTTATGTT 1319
Query 1262 GTGTATAAA-CCTAACCAGAATATATTGTGGTTTCTGGTGTTTAG-TATCGGTAA--G-- 1315
||||||||| || |||||| |||||||| |||||||||||||||| | | ||||| |
Sbjct 1320 GTGTATAAAACCCAACCAGGATATATTGCGGTTTCTGGTGTTTAGATTT-GGTAATTGGA 1378
Query 1316 -CTTAGTACAATGCA-CCCTGTCTTACTTTATTGGGCGTCTTTAAGACAAATCAGCTT 1371
|||||||||||||| ||||||||| ||||||||| ||||| ||||| ||||||||||
Sbjct 1379 GCTTAGTACAATGCAACCCTGTCTTGCTTTATTGGACGTCTCTAAGATAAATCAGCTT 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5