BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489321
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24580.1 | Symbols: | Heavy metal transport/detoxification ... 1703 0.0
> AT5G24580.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:8410258-8412240 REVERSE LENGTH=1249
Length=1249
Score = 1703 bits (922), Expect = 0.0
Identities = 1083/1158 (94%), Gaps = 21/1158 (2%)
Strand=Plus/Plus
Query 27 CTTTAATTATTCATCAATAATTC-CATTCCTCCTTCATCTTTTT-ATATACTAGTGTTTC 84
||||||||||||||||||||||| ||| ||||||| | ||||| |||||||||||||||
Sbjct 2 CTTTAATTATTCATCAATAATTCTAATT-CTCCTTCGT-TTTTTAATATACTAGTGTTTC 59
Query 85 ATATAAATACTCGCTCTCTCTACCCATTCCCTCCATAACATATCTCTT-TTCTTCGTTTC 143
||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||
Sbjct 60 ATATAAATACTCGCTCTCTCTACTCATTCCCTCCATAACATATAT-TTCTTCTTCGTTTC 118
Query 144 ATTTGTAACCAT-ATCGTCGTGTAACCACAGATTCTAAAACATGGGTGAAGAAGTAAAAC 202
| | | ||| |||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 119 A--T-T---CATAATCGTCTTATAACCACAGATTCTAAAACATGGGAGAAGAAGTAAAAC 172
Query 203 C--A-GCAAAGGAGGCAGTCTCTGCTCCAGAGGCCGTCCCCGCggaggagaaggagaaga 259
| | ||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||
Sbjct 173 CAGAGGCAAAGGAGGCAGCCTCTGCTCCACAGGCCGTCCCCGCTGAGGAGGAGGAGAAGA 232
Query 260 agaaagatctggcggaggagaagaaagtggcggctgaggaggagaaACCAACGGAGGAGG 319
|||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 233 AGAAAGATGTAGCGGAGGAGAAGAAAGTGGCGGCTGAGGAGGAGAAACCAAAGGAGGAAG 292
Query 320 AGGAGCCGCAACCACCACCACCGCCTCCACCCTTCATACTCTACGTCGACTTGCATTGTG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGGAGCCGCAACCACCACCACCGCCTCCACCCTTCATACTCTACGTCGACTTGCATTGTG 352
Query 380 TTGGATGCGCTAAGAAGATTGAAAGATCTATTCTAAAAATTAGAGGTGTGGAAGAAGTGG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TTGGATGCGCTAAGAAGATTGAAAGATCTATTCTAAAAATTAGAGGTGTGGAAGAAGTGG 412
Query 440 TGATGGATATGAATGAGAACCAAGTGACGATAAAAGGAGTGTTGGATCCGCAGGCAGTGT 499
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 413 TGATGGATATGAATGAGAACCAAGTGACGATAAAGGGAGTGTTGGATCCGCAAGCAGTGT 472
Query 500 GCAACAAAATCAAGAAGAAGACTAAAAGAATGGCCAAAGTCCTATCTCCGCTTCCGGCAG 559
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 473 GCAACAAAATCAAGAAGAAGACTAAAAGAATGGCCAAAGTCCTCTCGCCGCTTCCGGCAG 532
Query 560 CCGAGGGAGAGCCTCTCCCACCGATCATAACCTCTCAGGTCTCCGGCGGTCTCACCACCG 619
| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 533 CTGAGGGAGAGCCTCTGCCACCAATCATAACCTCTCAGGTCTCCGGCGGCCTCACCACCG 592
Query 620 TCGAGCTCAACGTCAACATGCACTGCGAAGCTTGTGCTGACCAGCTCAAGAAGAAGATTC 679
||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 593 TCGAGCTCAGCGTTAACATGCACTGCCAAGCTTGTGCTGACCAGCTCAAGAAGAAGATTC 652
Query 680 TCAAAATGAGAGGGGTCCAAACAACTGTGACGGAGCACACCACCGGAAAAGTAATAGTAA 739
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 653 TCAAAATGAGAGGGGTCCAAACAACTGTGACAGAGCACACCACGGGAAAAGTAATAGTGA 712
Query 740 CTGGAACAATGGACGCCGAGAAGCTTGTGGATTACGTCTACCGTCGGACCAAAAAGCAAG 799
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTGGGACAATGGACGCTGAGAAGCTTGTGGATTACGTCTACCGTCGGACCAAAAAGCAAG 772
Query 800 CCCGAATCGTACCCCAACCTGACCCGGAACCTGAAAACCC-G-G-CCGCGGAGGAAGAGA 856
||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||| |
Sbjct 773 CCCGAATCGTACCCCAACCTGACCCGGAACCTGAAGCCCCCGCGGCCGCGCAGGAAGAAA 832
Query 857 AGAAGGAGGAGAATGGTGACGGCGATGAAAAACCGCCagaaaccggagaggataaggaag 916
|||||||||||| ||||| ||| |||||||||| ||||| ||||||||||| |||||||
Sbjct 833 AGAAGGAGGAGAGCGGTGAAGGCAATGAAAAACCACCAGAGACCGGAGAGGAAAAGGAAG 892
Query 917 aagagaagaagaaggagggagaggaaaatagagaggaaggtggtggagaagaggcggcgg 976
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 AAGAGAAGAAGAAGGAGGGAGAGGAAAATGGAGAGGAAGGTGGTGGAGAAGAGGCGGCGG 952
Query 977 ctacggaggaagagagaagagaCGATGAAATGGCGGCGATGGTGGAAGTGGAAGGGATGA 1036
||||||||||||||||| ||||| |||||||| |||| |||| ||| ||||||||||
Sbjct 953 CTACGGAGGAAGAGAGACGAGACAATGAAATGACGGCTATGGCCCAAGAAGAAGGGATGA 1012
Query 1037 AGAGGATGATGTATTACTATCAGCCTTCATACGTCATAGAGAGGATTCCTCCGCCGCAGC 1096
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGAGGATGATGTATTACTATCAACCTTCATACGTCATAGAGAGGATTCCTCCGCCGCAGC 1072
Query 1097 TTTTTAGCGACGAGAACCCTAATGCTTGTTGCATTTCTTAATTAA-TTTGGTTTTCGTAT 1155
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1073 TTTTTAGCGACGAGAACCCTAATGCTTGTTGCATTTCTTAATTAAATTTGGTTT-CGTAT 1131
Query 1156 ATGTCTTTGGAAAATATA 1173
|||||| |||||||||||
Sbjct 1132 ATGTCTATGGAAAATATA 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5