BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489325 Length=1438 Score E Sequences producing significant alignments: (Bits) Value AT5G24620.1 | Symbols: | Pathogenesis-related thaumatin superf... 1410 0.0 > AT5G24620.1 | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:8430768-8432414 FORWARD LENGTH=1538 Length=1538 Score = 1410 bits (763), Expect = 0.0 Identities = 926/1005 (92%), Gaps = 9/1005 (1%) Strand=Plus/Plus Query 87 AAACGTTTTTACCATAATGGGAAGATCACCAATGGTTCCCATGGCTGTTCTTGTTTATGT 146 |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 135 AAACGTTTATACGATAATGGGAAGATCACCAATGGTTCCTATGGCTGTTCTTGTTTATGT 194 Query 147 TTCTCTACTGTTCTCTGTTTCTTATTCCTCAACGTTCGTCATCACAAATAACTGTCCTTT 206 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 195 TTCTCTACTGTTCTCTGTTTCTTATTCCTCCACGTTCGTCATCACAAATAACTGTCCCTT 254 Query 207 TACTATATGGCCCGGAACTCTTGCAGGCTCTGGCACCCAGCCATTACCCACCACAGGGTT 266 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 255 TACTATATGGCCTGGAACTCTTGCAGGCTCTGGCACCCAGCCACTACCCACCACAGGGTT 314 Query 267 CAGGCTTGATGTGGGACAGTCTGTTAAG-ATTCCCTCGGCTCTAGGCTGGTCAGGTCGTA 325 ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| Sbjct 315 CAGGCTTGATGTGGGACAGTCTGTT-AGAATTCCCACGGCTCTAGGCTGGTCAGGTCGTA 373 Query 326 TATGGGCAAGGACAGGCTGCAACTTTGATGCCACCGGCGCGGGAAAATGTATGACTGGAG 385 | ||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 374 TTTGGGCTAGGACTGGCTGCAACTTTGATGCTAACGGCGCGGGAAAATGTATGACTGGAG 433 Query 386 ACTGTGGCGGGAAGCTTGAGTGCGCCGGTAATGGTGCTGCTCCGCCGACATCACTTTTCG 445 |||| ||||| ||||| ||||| || |||||||| ||||||||||||||||| ||||||| Sbjct 434 ACTGCGGCGGAAAGCTGGAGTGTGCTGGTAATGGCGCTGCTCCGCCGACATCTCTTTTCG 493 Query 446 AGATCACACTCGGTCATGGTGCTGATGACAAAGATTTCTACGATGTGAGTCTCGTTGATG 505 |||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct 494 AGATCACACTCGGTCACGGTTCTGATGACAAAGATTTCTATGATGTCAGTCTCGTTGATG 553 Query 506 GGTATAACCTTCCCATAGTTGCTCTTCCGACCGGTGGTGGACTGATTGGAGCTTGTAATG 565 ||||||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||| Sbjct 554 GGTATAACCTTCCCATAGTTGCTCTCCCGACGGGTGGTGGACTGGTTGGCGCTTGTAATG 613 Query 566 CTACAGGATGTGTTGCTGATATCAACATAAGCTGTCCAAAGGAGCTTCAAGTGGTAGGAG 625 ||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||| Sbjct 614 CTACAGGATGTGTTGCTGATATCAATATTAGCTGTCCAAAGGAGCTTCAAGTGATGGGAG 673 Query 626 AGGAAGAGGC--AGAGA-GAGGAGTTGTTGCATGCAAGAGCGCTTGTGAGGCCTTTGGGT 682 |||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 674 AGGAAGAGGCTGAAAGAGGAGGGGTTGTTGCATGCAAGAGCGCTTGTGAGGCCTTTGGGT 733 Query 683 TGGACCAGTACTGTTGCAGCGGTCAGTTTGCTAACCCGACCACATGCCGACCGTCTTTTT 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 734 TGGACCAGTACTGTTGCAGCGGTCAGTTTGCTAACCCGACCACATGCCGACCGTCTTTAT 793 Query 743 ACTCTTCCATCTTCAAGAGAGCTTGTCCCAGAGCTTATAGCTATGCATTTGATGATGGAA 802 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 794 ACTCTTCCATCTTCAAGAGAGCTTGTCCCAGAGCTTATAGCTATGCCTTCGATGATGGAA 853 Query 803 CCAGTACTTTCACTTGCAAGGCTTCTGAATATGCCATTATCTTCTGCCCTGGCAGGGTAA 862 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 854 CCAGTACTTTCACCTGCAAGGCTTCTGAATATGCAATTATCTTCTGCCCTGGCAGGGTAA 913 Query 863 AAAGACCGGACAGTCAGAGCTCGGATCCTCCCAGCCCACCTCAGAATCAGTTCGGGCAAC 922 ||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct 914 AAAGACCAGACAGTCTGAACTCGGATCCTCCCAGCCCACCTCAGAATCAGTTAGGGCAAC 973 Query 923 CTATGGCTCCTCCACCTCAGAATCAGTACCGTCAGCCTATGGCTCCACCGACC-CAAAAT 981 |||||||||| ||| |||| |||||||| |||| ||||||||||| | ||| || || Sbjct 974 CTATGGCTCCCCCAACTCAAAATCAGTATGGTCAACCTATGGCTCCTGC-ACCTCAGTAT 1032 Query 982 CCGTATGGTCAACCTATGGCTCCTCCCACTCAGAATCAATACAATCAACCTATGGCTCCA 1041 | ||| ||||||||||||||||| || ||||| ||||| || ||||||| ||||||| Sbjct 1033 CAGTACGGTCAACCTATGGCTCCACCGACTCAAAATCAGTATGGTCAACCTCTGGCTCCT 1092 Query 1042 CCGACTCAGAATCAGTACGGTCCACCTATGGTTCCTCTC-ACTCA 1085 |||||||| ||||| |||| || |||| ||| ||||| | ||||| Sbjct 1093 CCGACTCAAAATCAATACGATCAACCTCTGGCTCCTC-CGACTCA 1136 Score = 592 bits (320), Expect = 4e-168 Identities = 484/560 (86%), Gaps = 23/560 (4%) Strand=Plus/Plus Query 897 CCCACCTCAGAATCAGT-TCGGGCAACCTATGGCTCCTCCACCTCAGAATCAGTACCGTC 955 |||| |||| ||||||| | || ||||||||||||||| |||||||| |||||||| ||| Sbjct 984 CCCAACTCAAAATCAGTAT-GGTCAACCTATGGCTCCTGCACCTCAGTATCAGTACGGTC 1042 Query 956 AGCCTATGGCTCCACCGACCCAAAATCCGTATGGTCAACCTATGGCTCCTCCCACTCAGA 1015 | ||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||| | Sbjct 1043 AACCTATGGCTCCACCGACTCAAAATCAGTATGGTCAACCTCTGGCTCCTCCGACTCAAA 1102 Query 1016 ATCAATACAATCAACCTATGGCTCCACCGACTCAGAATCAGTACGGTCCACCTATGGTTC 1075 |||||||| |||||||| ||||||| |||||||| ||||| || |||| |||||||| || Sbjct 1103 ATCAATACGATCAACCTCTGGCTCCTCCGACTCAAAATCAATATGGTCAACCTATGGCTC 1162 Query 1076 CTCTC-ACTCAGAACCCACCTGGACCAAACGGGGAATCAATGGCTCCCCCACCTCAGAAT 1134 | | | |||| | |||||| |||||||||| ||| |||||| ||||||||||||||||| Sbjct 1163 CAC-CAACTCCGCCCCCACCCGGACCAAACGAGGATTCAATGACTCCCCCACCTCAGAAT 1221 Query 1135 CAAAACGAGAATGGGCAGTTCATGCCTCCTCCCACTGTGAACCAAGTTCCAAACGACCGG 1194 || || | | |||||||||||||||||||||||||| || |||||| ||||||||||| | Sbjct 1222 CAGAATGGGGATGGGCAGTTCATGCCTCCTCCCACTTTGGACCAAGATCCAAACGACCAG 1281 Query 1195 TATATGAATCCCCCAATTCAGGATCAGAGTCAA--------TC---CT-CATCCAATATT 1242 ||||||||||||||||||||||||||||||||| || || ||||| || || Sbjct 1282 TATATGAATCCCCCAATTCAGGATCAGAGTCAAAGAGAGACTCAATCTTCATCCGATCTT 1341 Query 1243 CTTCGACCTTACCCTGTCTTCTTGCTTCTTGGCTTCAGTCTAACTGCTTTGAGACAATCA 1302 |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 1342 CTTCGACCTTACCCTGTCTTGTTGCTTCTTGGCTTTAGTCTAACTGCTTTGAGGCAATCT 1401 Query 1303 GGCACGACATGAATCATCATCATTCTTCCTTTTTA-TCGAGAATTGATACATAAAC-GTG 1360 ||||||||||||| ||| |||||||| | |||||| | |||| || ||||||| | ||| Sbjct 1402 GGCACGACATGAAACATAATCATTCTAC-TTTTTAATT-AGAAATGCTACATAA-CTGTG 1458 Query 1361 TGGAGGAATCAGACAGACCATGTTTAATGTCTTCTCAGAGATTTT--ATACTCCATTCAT 1418 | ||||||||| ||||||||||||||||||||||||||||||||| |||||||| | || Sbjct 1459 TAGAGGAATCAAACAGACCATGTTTAATGTCTTCTCAGAGATTTTTTATACTCCAATAAT 1518 Query 1419 CAAAGTCCTTAGATTTACCT 1438 ||| |||||||||||||||| Sbjct 1519 CAATGTCCTTAGATTTACCT 1538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70883169540 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5