BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489325
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24620.1 | Symbols: | Pathogenesis-related thaumatin superf... 1410 0.0
> AT5G24620.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr5:8430768-8432414 FORWARD LENGTH=1538
Length=1538
Score = 1410 bits (763), Expect = 0.0
Identities = 926/1005 (92%), Gaps = 9/1005 (1%)
Strand=Plus/Plus
Query 87 AAACGTTTTTACCATAATGGGAAGATCACCAATGGTTCCCATGGCTGTTCTTGTTTATGT 146
|||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 135 AAACGTTTATACGATAATGGGAAGATCACCAATGGTTCCTATGGCTGTTCTTGTTTATGT 194
Query 147 TTCTCTACTGTTCTCTGTTTCTTATTCCTCAACGTTCGTCATCACAAATAACTGTCCTTT 206
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 195 TTCTCTACTGTTCTCTGTTTCTTATTCCTCCACGTTCGTCATCACAAATAACTGTCCCTT 254
Query 207 TACTATATGGCCCGGAACTCTTGCAGGCTCTGGCACCCAGCCATTACCCACCACAGGGTT 266
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 255 TACTATATGGCCTGGAACTCTTGCAGGCTCTGGCACCCAGCCACTACCCACCACAGGGTT 314
Query 267 CAGGCTTGATGTGGGACAGTCTGTTAAG-ATTCCCTCGGCTCTAGGCTGGTCAGGTCGTA 325
||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 315 CAGGCTTGATGTGGGACAGTCTGTT-AGAATTCCCACGGCTCTAGGCTGGTCAGGTCGTA 373
Query 326 TATGGGCAAGGACAGGCTGCAACTTTGATGCCACCGGCGCGGGAAAATGTATGACTGGAG 385
| ||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 374 TTTGGGCTAGGACTGGCTGCAACTTTGATGCTAACGGCGCGGGAAAATGTATGACTGGAG 433
Query 386 ACTGTGGCGGGAAGCTTGAGTGCGCCGGTAATGGTGCTGCTCCGCCGACATCACTTTTCG 445
|||| ||||| ||||| ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 434 ACTGCGGCGGAAAGCTGGAGTGTGCTGGTAATGGCGCTGCTCCGCCGACATCTCTTTTCG 493
Query 446 AGATCACACTCGGTCATGGTGCTGATGACAAAGATTTCTACGATGTGAGTCTCGTTGATG 505
|||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 494 AGATCACACTCGGTCACGGTTCTGATGACAAAGATTTCTATGATGTCAGTCTCGTTGATG 553
Query 506 GGTATAACCTTCCCATAGTTGCTCTTCCGACCGGTGGTGGACTGATTGGAGCTTGTAATG 565
||||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||
Sbjct 554 GGTATAACCTTCCCATAGTTGCTCTCCCGACGGGTGGTGGACTGGTTGGCGCTTGTAATG 613
Query 566 CTACAGGATGTGTTGCTGATATCAACATAAGCTGTCCAAAGGAGCTTCAAGTGGTAGGAG 625
||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||
Sbjct 614 CTACAGGATGTGTTGCTGATATCAATATTAGCTGTCCAAAGGAGCTTCAAGTGATGGGAG 673
Query 626 AGGAAGAGGC--AGAGA-GAGGAGTTGTTGCATGCAAGAGCGCTTGTGAGGCCTTTGGGT 682
|||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 674 AGGAAGAGGCTGAAAGAGGAGGGGTTGTTGCATGCAAGAGCGCTTGTGAGGCCTTTGGGT 733
Query 683 TGGACCAGTACTGTTGCAGCGGTCAGTTTGCTAACCCGACCACATGCCGACCGTCTTTTT 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 734 TGGACCAGTACTGTTGCAGCGGTCAGTTTGCTAACCCGACCACATGCCGACCGTCTTTAT 793
Query 743 ACTCTTCCATCTTCAAGAGAGCTTGTCCCAGAGCTTATAGCTATGCATTTGATGATGGAA 802
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 794 ACTCTTCCATCTTCAAGAGAGCTTGTCCCAGAGCTTATAGCTATGCCTTCGATGATGGAA 853
Query 803 CCAGTACTTTCACTTGCAAGGCTTCTGAATATGCCATTATCTTCTGCCCTGGCAGGGTAA 862
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 854 CCAGTACTTTCACCTGCAAGGCTTCTGAATATGCAATTATCTTCTGCCCTGGCAGGGTAA 913
Query 863 AAAGACCGGACAGTCAGAGCTCGGATCCTCCCAGCCCACCTCAGAATCAGTTCGGGCAAC 922
||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 914 AAAGACCAGACAGTCTGAACTCGGATCCTCCCAGCCCACCTCAGAATCAGTTAGGGCAAC 973
Query 923 CTATGGCTCCTCCACCTCAGAATCAGTACCGTCAGCCTATGGCTCCACCGACC-CAAAAT 981
|||||||||| ||| |||| |||||||| |||| ||||||||||| | ||| || ||
Sbjct 974 CTATGGCTCCCCCAACTCAAAATCAGTATGGTCAACCTATGGCTCCTGC-ACCTCAGTAT 1032
Query 982 CCGTATGGTCAACCTATGGCTCCTCCCACTCAGAATCAATACAATCAACCTATGGCTCCA 1041
| ||| ||||||||||||||||| || ||||| ||||| || ||||||| |||||||
Sbjct 1033 CAGTACGGTCAACCTATGGCTCCACCGACTCAAAATCAGTATGGTCAACCTCTGGCTCCT 1092
Query 1042 CCGACTCAGAATCAGTACGGTCCACCTATGGTTCCTCTC-ACTCA 1085
|||||||| ||||| |||| || |||| ||| ||||| | |||||
Sbjct 1093 CCGACTCAAAATCAATACGATCAACCTCTGGCTCCTC-CGACTCA 1136
Score = 592 bits (320), Expect = 4e-168
Identities = 484/560 (86%), Gaps = 23/560 (4%)
Strand=Plus/Plus
Query 897 CCCACCTCAGAATCAGT-TCGGGCAACCTATGGCTCCTCCACCTCAGAATCAGTACCGTC 955
|||| |||| ||||||| | || ||||||||||||||| |||||||| |||||||| |||
Sbjct 984 CCCAACTCAAAATCAGTAT-GGTCAACCTATGGCTCCTGCACCTCAGTATCAGTACGGTC 1042
Query 956 AGCCTATGGCTCCACCGACCCAAAATCCGTATGGTCAACCTATGGCTCCTCCCACTCAGA 1015
| ||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||| |
Sbjct 1043 AACCTATGGCTCCACCGACTCAAAATCAGTATGGTCAACCTCTGGCTCCTCCGACTCAAA 1102
Query 1016 ATCAATACAATCAACCTATGGCTCCACCGACTCAGAATCAGTACGGTCCACCTATGGTTC 1075
|||||||| |||||||| ||||||| |||||||| ||||| || |||| |||||||| ||
Sbjct 1103 ATCAATACGATCAACCTCTGGCTCCTCCGACTCAAAATCAATATGGTCAACCTATGGCTC 1162
Query 1076 CTCTC-ACTCAGAACCCACCTGGACCAAACGGGGAATCAATGGCTCCCCCACCTCAGAAT 1134
| | | |||| | |||||| |||||||||| ||| |||||| |||||||||||||||||
Sbjct 1163 CAC-CAACTCCGCCCCCACCCGGACCAAACGAGGATTCAATGACTCCCCCACCTCAGAAT 1221
Query 1135 CAAAACGAGAATGGGCAGTTCATGCCTCCTCCCACTGTGAACCAAGTTCCAAACGACCGG 1194
|| || | | |||||||||||||||||||||||||| || |||||| ||||||||||| |
Sbjct 1222 CAGAATGGGGATGGGCAGTTCATGCCTCCTCCCACTTTGGACCAAGATCCAAACGACCAG 1281
Query 1195 TATATGAATCCCCCAATTCAGGATCAGAGTCAA--------TC---CT-CATCCAATATT 1242
||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct 1282 TATATGAATCCCCCAATTCAGGATCAGAGTCAAAGAGAGACTCAATCTTCATCCGATCTT 1341
Query 1243 CTTCGACCTTACCCTGTCTTCTTGCTTCTTGGCTTCAGTCTAACTGCTTTGAGACAATCA 1302
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 1342 CTTCGACCTTACCCTGTCTTGTTGCTTCTTGGCTTTAGTCTAACTGCTTTGAGGCAATCT 1401
Query 1303 GGCACGACATGAATCATCATCATTCTTCCTTTTTA-TCGAGAATTGATACATAAAC-GTG 1360
||||||||||||| ||| |||||||| | |||||| | |||| || ||||||| | |||
Sbjct 1402 GGCACGACATGAAACATAATCATTCTAC-TTTTTAATT-AGAAATGCTACATAA-CTGTG 1458
Query 1361 TGGAGGAATCAGACAGACCATGTTTAATGTCTTCTCAGAGATTTT--ATACTCCATTCAT 1418
| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1459 TAGAGGAATCAAACAGACCATGTTTAATGTCTTCTCAGAGATTTTTTATACTCCAATAAT 1518
Query 1419 CAAAGTCCTTAGATTTACCT 1438
||| ||||||||||||||||
Sbjct 1519 CAATGTCCTTAGATTTACCT 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5