BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489330
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24680.1 | Symbols: | Peptidase C78, ubiquitin fold modifie... 1897 0.0
AT5G24690.1 | Symbols: | Protein of unknown function (DUF3411)... 73.1 6e-12
> AT5G24680.1 | Symbols: | Peptidase C78, ubiquitin fold modifier-specific
peptidase 1/ 2 | chr5:8453602-8455518 FORWARD LENGTH=1424
Length=1424
Score = 1897 bits (1027), Expect = 0.0
Identities = 1248/1353 (92%), Gaps = 22/1353 (2%)
Strand=Plus/Plus
Query 1 AAAAATGTCAGCTTTGTGTCCTGTCTGCAATCTCACGCTTCCTCTCTCCCTAATCCAAAG 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGATGTCAGCTTTGTGTCCTGTCTGCAATCTCACGCTTCCTCTCTCCCTAATCCAAAG 120
Query 61 CCATGTGAATTCCCACTTCGAAGACGATGAAATCGATCCACAAATCGAAAGTGACCACCA 120
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 121 CCATGTGAATTCCCACTTCGAAGACGATGAAATCAATCCACAAATCGAAACCGATCACCA 180
Query 121 TTTGGCTCTGCAACTCGCTTC---T--TC-TTCTTC---TGACCCTTCTCCGTCTACCTC 171
|||||||||||||||||||| | || |||||| ||| |||||| ||||| ||||
Sbjct 181 CTTGGCTCTGCAACTCGCTTCTGATGATCATTCTTCTGATGATCCTTCTTCGTCTTCCTC 240
Query 172 TGCGTCATCATCTGACAAAGTTGTCTCTTTGGTGCATTTACAGACCAAGAGTCAATTCTA 231
||| ||||||||| |||| |||| ||| ||||| || |||||||| ||||||||||||||
Sbjct 241 TGCTTCATCATCTAACAACGTTGCCTCCTTGGTCCAGTTACAGACTAAGAGTCAATTCTA 300
Query 232 CAGTGTAGGTCATGGTGGTTTGATTTGTTTGCTGAGGAACTGTTTGGAATCAGAACTGAG 291
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 301 TAGTGTAGGTCATGGTGGTTTGATTTGTTTGCTGAGGAACTGTCTGGAGTCAGAACTGAA 360
Query 292 ATCGAAATCGAAACCTTTAGAGAGTAGTACTAGTTTACTATCAGGCTTTGTTGATCATTT 351
|| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGAAGTCGAAACCTTTAGAGTGTAGTACTAGTTTACTATCAGGCTTTGTTGATCATTT 420
Query 352 TCAATCTTC-AATGGAGGATAAAGGTTGGGGATGTGGATGGAGGAATATTCAAATGCAAT 410
||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 421 TCAATCTTCGAA-GGAGGATAAAGGTTGGGGATGTGGATGGAAGAACATTCAAATGCAAT 479
Query 411 GTTCTCATTTGCTTTCTTGTAGAGTAGAAGCTAAAAGAGTTCTCTTTAGTGGCTCTAATT 470
| ||||||||||||||| ||||| ||||||||| |||||||||||| |||| |||||||
Sbjct 480 GCTCTCATTTGCTTTCTCATAGAGAAGAAGCTAAGAGAGTTCTCTTTGGTGGTTCTAATT 539
Query 471 TTGTTCCTGATATTCCTTCGCTCCAGCGATGGCTTGAGTTAGCTTGGAGCAAGGGGTTTG 530
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TTGTTCCTGATATTCCTTCGCTCCAGCGATGGCTTGAGTTAGCTTGGAACAAGGGGTTTG 599
Query 531 ATGTTTCTGGAGCTCTCCAGTTTGATAATCGAATCTGTGGTTCCAAGAGATGGATTGGAA 590
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 600 ATGTTTCTGGAGCTCTTCATTTTGATAATCGAATATGTGGTTCCAAGAGATGGATTGGAA 659
Query 591 CTACTGAATGTGCTGCGTTGTTACGTTCTTTCGGGTTAAAAGCTATGATTGTTGATTTTG 650
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 660 CTACTGAATGTGCTGCGTTGTTACGTTCTTTCGGGTTGAAAGCGAGGATTGTTGATTTTG 719
Query 651 CTCCTAAGAAGTCTAAGTCAATGTATCTTTCAGTTCCTGGTTCTGCTATTGCTCCCAAGG 710
|||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 720 CTCCCGAGAAGTCTAAATCGATGTATCTTTCAGTTCCTGGTTCTGCTATTGCACCCAAGG 779
Query 711 TAAAGTCATATGGTCCCATGGACAGATATGTGGTTAAAAAGGGGGGAAGTGGGAAGGGAA 770
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 TAAAGTCATATGGTCCCATGGACAGATATATGGTTAAAAAGGGGGGAAGTGGGAAGGGAA 839
Query 771 AAGCAGTTGACTCTCATAGTTCTAATTCTTCTAGGATCAGCAAAGGAGCGGTTTTAATGG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGCAGTTGACTCTCATAGTTCTAATTCTTCTAGGATCAGCAAAGGAGCGGTTTTAATGG 899
Query 831 AATGGGTTTGGAATTACTTCTCAGATAACAGGTTAAATGTTTCATCCGGTGTTCATATGA 890
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 900 AATGGGTTTGGAATTACTTCTCAGATAACAGGTTAAGTGTTTCATCCGGTGTTCATATTA 959
Query 891 CGAACAAAGGGCCCTTGTATTTCCAACATGAAGGGCACTCGAGGACAATTGTTGGGATTC 950
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 960 CGAATAAAGGGCCCTTGTATTTCCAACATGAAGGGCACTCGAGGACAATTGTTGGGGTTC 1019
Query 951 AGAGACGGTTGCTAGGAACTACATTTATTCCTCAGTACAATCTCCTGATTTTGGACCCGA 1010
|||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1020 AGAGACGGTTGCAAGGAACTACATTTACTCCTCAGTACAATCTCCTAATTTTGGACCCGG 1079
Query 1011 CTGATTTTACTAGAGCTATAGAGAAAGCGCTTATAGAGAAAAGAGGATGGGAGGGATATC 1070
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1080 CTGATTTTACTAGAGCTATAGAGATAGCGCTTATAGAGAAGAGAGGATGGGAGGGATATC 1139
Query 1071 TTAAAAGAGGAGCTCACACATTGACGTGTCCCGAGTATCAGATGTTGTACGTTGATAAAG 1130
|||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||| |
Sbjct 1140 TTAAAAGAGGAGCTCACACACTGAAATGCCCCGAGTATCAGATGCTGTACGTTGATAATG 1199
Query 1131 GAATTACTGATGGAGAGGAGTTGGAGAAGCTCAAGACCATTGATAGTCACTTTGTTGAAT 1190
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1200 GAATTGCTGATGGAGAGGAGTTGGAGAAGCTCAAAACCATTGATAGTCACTTTGTTGAAT 1259
Query 1191 TCTAATTG-CTTTCAT-AAAAATTGAAGAATGGTTCTTGGAGATTCATAGATTGATTGCA 1248
|||||| | ||| ||| |||||||||||||||||||||| |||||| |||||| ||||||
Sbjct 1260 TCTAAT-GACTTCCATCAAAAATTGAAGAATGGTTCTTGAAGATTCTTAGATTAATTGCA 1318
Query 1249 ATTGTAT-ACTTCT-GTA-TCATATGCAACATTTTA-TAAACAAGTTTCAACAAACATAT 1304
||| | | | || | | | | | | || | | | | ||||||||||| ||| |||
Sbjct 1319 ATTTT-TCAGGACTAGGAGTTAGA--CTAC-TATGACTTTCCAAGTTTCAACGAACGTAT 1374
Query 1305 AAGATGTGGCTATTTATTAGAAACATTGAGAAA 1337
|||||||||||||||||||||||||||||||||
Sbjct 1375 AAGATGTGGCTATTTATTAGAAACATTGAGAAA 1407
> AT5G24690.1 | Symbols: | Protein of unknown function (DUF3411)
| chr5:8455457-8458751 REVERSE LENGTH=2130
Length=2130
Score = 73.1 bits (39), Expect = 6e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 1293 CAACAAACATATAAGATGTGGCTATTTATTAGAAACATTGAGAAA 1337
|||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2130 CAACGAACGTATAAGATGTGGCTATTTATTAGAAACATTGAGAAA 2086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5