BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489336
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24760.1 | Symbols: | GroES-like zinc-binding dehydrogenase... 2032 0.0
> AT5G24760.1 | Symbols: | GroES-like zinc-binding dehydrogenase
family protein | chr5:8494791-8497405 REVERSE LENGTH=1550
Length=1550
Score = 2032 bits (1100), Expect = 0.0
Identities = 1307/1400 (93%), Gaps = 41/1400 (3%)
Strand=Plus/Plus
Query 2 TTCGGTGTTAGGTGAAGAACCTCTG----TT--TCTTCTTCTTCAGGGTCGGTGTTAGGT 55
||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 15 TTCGGTGTTAGGTGAAGAACCTCTGTTTCTTCCTCTTCTTCTTCAGGGTCGGTGTTAGGT 74
Query 56 GAAGAAGCT-C--TGTTTC---TTCG---TCTTCTTCTTC-AGGTTTCTTCATTTTGTTC 105
|| |||||| | | |||| |||| ||||||||||| |||| ||||| |||||| |
Sbjct 75 GATGAAGCTCCGTTTTTTCGTTTTCGTCTTCTTCTTCTTCAAGGTCTCTTCGTTTTGTGC 134
Query 106 TTGAAGCAAGAAAATTTGGGATAACTATGTCGtcttcttcttcttcttcCTTGGAACAAC 165
|||||| |||||||||||||| ||| |||||| |||||||||| | ||||| |||||||
Sbjct 135 TTGAAGTAAGAAAATTTGGGAGAACAATGTCGGCTTCTTCTTC--C-TCCTTTGAACAAC 191
Query 166 CTCAAGTCATAACCTGCAAAGCGGCGGTGGCATGGCGTGCTGGTGAGCCATTGGTTATGG 225
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CTCAAGTCATAACCTGCAACGCGGCGGTGGCATGGCGTGCTGGTGAGCCATTGGTTATGG 251
Query 226 AGGAAGTTGAAGTGAGTCCACCTCAACCTCTTGAGATCAGAATTAAAGTTGTATGTACAT 285
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 252 AGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACAT 311
Query 286 CTCTCTGTCGTAGTGATCTTTCTGCTTGGGAATCTCAGTCTCTTTTGCCTCGAATATTTG 345
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGTCTCTTTTGCCTCGAATATTTG 371
Query 346 GCCATGAAGCTGCAGGTATAGTAGAGAGCATTGGAGAAGGTGTAACCGAGTTTGAAAAAG 405
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 372 GCCATGAAGCTGCAGGTATAGTGGAGAGCATTGGAGAAGGTGTAACTGAGTTTGAAAAAG 431
Query 406 GAGATCATGTGCTCGCTGTATTCACTGGAGAATGTGGGTCATGTCGGCATTGCATCTCTG 465
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 432 GAGATCATGTGCTTGCTGTATTCACTGGAGAATGTGGGTCATGTCGGCATTGCATATCTG 491
Query 466 GGAAAAGTAATATGTGTCAGGTTCTTGGAATGGAGAGGAAAGGTTTGATGCATAGTGATC 525
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GGAAAAGTAACATGTGTCAGGTTCTTGGAATGGAGAGGAAAGGTTTGATGCATAGTGATC 551
Query 526 AGAAGACACGCTTCTCCATCAAAGGCAAACCTGTTTACCATTACTGCGCGGTTTCAAGTT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGAAGACACGCTTCTCCATCAAAGGCAAACCTGTTTACCATTACTGCGCGGTTTCAAGTT 611
Query 586 TCAGCGAGTACACTGTGGTTCACTCTGGCTGTGCTGTCAAAGTCGATCCTGTGGCACCTC 645
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 612 TCAGCGAGTACACTGTGGTTCACTCTGGCTGTGCTGTCAAAGTCGATCCACTGGCACCTC 671
Query 646 TGCACAAAATTTGTCTGCTAAGCTGTGGAGTAGCTGCAGGTCTTGGTGCAGCGTGGAATG 705
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 672 TGCATAAAATTTGTCTTCTAAGCTGTGGAGTAGCTGCAGGTCTTGGTGCAGCATGGAATG 731
Query 706 TTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTT 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTT 791
Query 766 CGGTTGCTCAAGGTGCCAAACTCAGAGGAGCAACTCAAATAATTGGAGTTGATATAAATC 825
| |||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||
Sbjct 792 CTGTTGCTCAAGGTGCCAAACTTAGAGGAGCAGCTCAAATACTTGGGGTTGATATAAATC 851
Query 826 CAGCTAAGGCTGAACAAGCAAAGACATTTGGCGTCACGGATTTCATCAATTCAAATGACC 885
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 852 CCGCTAAGGCTGAACAAGCAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACC 911
Query 886 TCTCTGAACCTACACCTCAGGTGATCAAAAGAATGACAGGAGGAGGTGCGGATTTCTCAT 945
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 912 TCTCTGAACCTATACCCCAGGTGATCAAAAGAATGACAGGAGGAGGTGCAGATTTCTCAT 971
Query 946 TTGAATGTGTCGGTGATACAGGAATAGCTACAACTGCTTTACAATCGTGCTCAGATGGAT 1005
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 972 TTGAATGTGTTGGTGATACAGGAATAGCTACAACTGCTTTACAATCGTGCTCGGATGGAT 1031
Query 1006 GGGGAATGACGGTTACTCTAGGTGTACCGAAAG-TGAAGCCTGAAGTTTCAGCTCATTAC 1064
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1032 GGGGAATGACGGTTACTCTAGGTGTACCGAAAGCT-AAGCCTGAAGTTTCAGCTCATTAC 1090
Query 1065 GGACTTTTCCTTTCTGGAAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCCAAA 1124
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1091 GGACTTTTCCTTTCTGGGAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCTAAA 1150
Query 1125 TCTGATATTCCTTCACTCATTGAAAAGTACATGAACAAGGAGATTATGATCGATGAATTC 1184
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1151 TCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGGAGATTATGATCGATGAATTT 1210
Query 1185 GTAACGCATAACCTGGCATTTGATGAAATCAACAAAGCTTTTGATCTTATGAGAGATGGA 1244
| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1211 ATTACGCATAACCTGTCATTTGATGAAATCAACAAAGCTTTTGTTCTTATGAGAGAAGGA 1270
Query 1245 AAGTGTCTGCGTTGTGTTCTTCACATGCCAAAGTAATGTCTTGGAAAAAAGAT-T-A-A- 1300
|| ||| |||||||||||||||||||||||||||||||||| |||||| | || | | |
Sbjct 1271 AAATGTTTGCGTTGTGTTCTTCACATGCCAAAGTAATGTCTCGGAAAACACATGTCACAG 1330
Query 1301 ---CAAGA--GAT----G-----T--GTACATTCTACAGCTGAGTTGTTGTATAAAACAA 1344
||||| ||| | | ||| ||||||||||||||||||||||||||||||
Sbjct 1331 ATTCAAGAAAGATTAACGAGAGCTCTGTATATTCTACAGCTGAGTTGTTGTATAAAACAA 1390
Query 1345 AAGTGATGGTTTTCTCTAGA 1364
||||||||||||||| ||||
Sbjct 1391 AAGTGATGGTTTTCTATAGA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5